Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48508 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47177 * 299.99267 * 3 2 1 6 6 H 1.48495 * 109.47451 * 59.99944 * 3 2 1 7 7 C 1.38817 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.49962 * 126.74353 * 0.35524 * 9 7 2 11 11 C 1.56015 * 104.09919 * 182.13337 * 10 9 7 12 12 H 1.09003 * 116.24639 * 159.11971 * 11 10 9 13 13 C 1.57086 * 100.42092 * 32.48753 * 11 10 9 14 14 C 1.49290 * 126.94581 * 179.97438 * 9 7 2 15 15 H 1.08994 * 116.78377 * 16.31168 * 14 9 7 16 16 C 1.55997 * 104.31912 * 246.61625 * 14 9 7 17 17 N 1.47861 * 105.11439 * 289.11288 * 16 14 9 18 18 C 1.34780 * 126.94411 * 181.87201 * 17 16 14 19 19 O 1.21280 * 120.00423 * 179.68414 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.69090 * 18 17 16 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 18 23 23 C 1.34234 * 126.50298 * 265.02735 * 22 21 20 24 24 N 1.36830 * 109.93255 * 179.97438 * 23 22 21 25 25 H 0.97001 * 125.06670 * 180.02562 * 24 23 22 26 26 C 1.37696 * 109.87201 * 359.97438 * 24 23 22 27 27 C 1.39122 * 133.50442 * 180.02562 * 26 24 23 28 28 C 1.37758 * 119.77307 * 179.30650 * 27 26 24 29 29 C 1.38826 * 120.66780 * 0.55203 * 28 27 26 30 30 C 1.36628 * 120.52862 * 359.66320 * 29 28 27 31 31 C 1.39634 * 119.76166 * 359.97438 * 30 29 28 32 32 H 0.97003 * 119.99793 * 0.02562 * 1 2 3 33 33 H 1.08999 * 111.27905 * 63.31710 * 10 9 7 34 34 H 1.08996 * 110.31636 * 300.47560 * 10 9 7 35 35 H 1.09003 * 112.36449 * 64.06362 * 13 11 10 36 36 H 1.09001 * 112.36739 * 191.42078 * 13 11 10 37 37 H 1.08997 * 110.41347 * 170.14321 * 16 14 9 38 38 H 1.08997 * 110.19915 * 47.97015 * 16 14 9 39 39 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 40 40 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 41 41 H 1.09002 * 109.47153 * 299.99998 * 21 20 18 42 42 H 1.08998 * 109.47533 * 59.99628 * 21 20 18 43 43 H 1.08002 * 125.03471 * 359.97438 * 23 22 21 44 44 H 1.07995 * 120.11325 * 359.97438 * 27 26 24 45 45 H 1.07996 * 119.66191 * 180.19634 * 28 27 26 46 46 H 1.07991 * 119.73868 * 179.64944 * 29 28 27 47 47 H 1.07997 * 120.12023 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1637 -2.5642 -0.0075 11 6 -0.3640 -4.1102 0.0529 12 1 -1.3352 -4.4571 0.4058 13 6 0.8835 -4.5250 0.9128 14 6 1.9101 -3.7618 0.0005 15 1 2.9617 -3.8481 0.2738 16 6 1.5092 -4.3517 -1.3868 17 7 0.0514 -4.5835 -1.3005 18 6 -0.7413 -5.1192 -2.2499 19 8 -1.9281 -5.2576 -2.0418 20 6 -0.1529 -5.5462 -3.5699 21 6 -1.2584 -6.1173 -4.4602 22 6 -0.6702 -6.5438 -5.7804 23 6 -0.6282 -5.8167 -6.9080 24 7 -0.0182 -6.5323 -7.9020 25 1 0.1286 -6.2156 -8.8071 26 6 0.3572 -7.7686 -7.4260 27 6 0.9975 -8.8620 -8.0003 28 6 1.2523 -9.9824 -7.2403 29 6 0.8661 -10.0370 -5.9079 30 6 0.2321 -8.9764 -5.3250 31 6 -0.0294 -7.8278 -6.0748 32 1 -0.4850 0.8401 -0.0004 33 1 -0.6049 -2.1607 -0.9189 34 1 -0.6055 -2.0909 0.8694 35 1 0.8442 -4.1186 1.9234 36 1 1.0477 -5.6026 0.9126 37 1 2.0319 -5.2912 -1.5659 38 1 1.7325 -3.6367 -2.1786 39 1 0.3011 -4.6854 -4.0608 40 1 0.6064 -6.3095 -3.3994 41 1 -1.7120 -6.9782 -3.9691 42 1 -2.0180 -5.3544 -4.6308 43 1 -1.0180 -4.8152 -7.0149 44 1 1.3035 -8.8285 -9.0354 45 1 1.7523 -10.8290 -7.6871 46 1 1.0683 -10.9250 -5.3276 47 1 -0.0650 -9.0259 -4.2879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032765746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = 75.875015 kcal Electronic energy + Delta-G solvation = -28750.656261 eV Core-core repulsion = 24900.178677 eV Total energy + Delta-G solvation = -3850.477584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39935 -39.94684 -37.87814 -37.05202 -34.06270 -33.52591 -31.63734 -30.95568 -29.49452 -29.18202 -28.55590 -28.24970 -25.18558 -24.54040 -23.10597 -22.95934 -21.90493 -20.40920 -19.79801 -19.35312 -18.31262 -17.94689 -17.07806 -16.54414 -16.17302 -15.68356 -15.60822 -15.24875 -14.74193 -14.49198 -14.21163 -14.00223 -13.87764 -13.67230 -13.26134 -12.99299 -12.54112 -12.43894 -12.14820 -12.02015 -11.81950 -11.76674 -11.73627 -11.57458 -11.26690 -11.07187 -10.97592 -10.85846 -10.75299 -10.68290 -10.55422 -10.24361 -10.04329 -9.74499 -9.60293 -9.31211 -8.71748 -8.36209 -7.94102 -7.76048 -6.92607 -5.76450 -3.10467 0.98672 1.48916 2.53684 2.97204 3.15267 3.36612 3.41781 3.44793 3.51362 3.78790 4.41603 4.57644 4.67261 4.78777 4.90821 5.00075 5.11663 5.16984 5.21696 5.27699 5.33106 5.37532 5.44575 5.51989 5.58164 5.66505 5.67031 5.76446 5.80878 5.84061 5.85651 5.96308 6.17582 6.22083 6.27133 6.32860 6.37500 6.44510 6.48083 6.54015 6.59758 6.61881 6.68738 6.73954 7.02922 7.36868 7.43050 7.49471 7.71536 8.06215 8.18934 8.68817 9.07828 9.70998 10.40373 11.36023 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002486 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.061271 B =11261.203448 C =11803.406908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.177 3.823 11 C 0.096 3.904 12 H 0.111 0.889 13 C -0.151 4.151 14 C 0.142 3.858 15 H 0.106 0.894 16 C 0.084 3.916 17 N -0.607 5.607 18 C 0.526 3.474 19 O -0.559 6.559 20 C -0.127 4.127 21 C -0.027 4.027 22 C -0.163 4.163 23 C 0.051 3.949 24 N -0.597 5.597 25 H 0.414 0.586 26 C 0.094 3.906 27 C -0.133 4.133 28 C -0.101 4.101 29 C -0.150 4.150 30 C -0.067 4.067 31 C -0.101 4.101 32 H 0.253 0.747 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.171 0.829 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -17.577 -13.539 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.007 4.007 12 H 0.129 0.871 13 C -0.191 4.191 14 C 0.033 3.967 15 H 0.123 0.877 16 C -0.041 4.041 17 N -0.341 5.341 18 C 0.315 3.685 19 O -0.439 6.439 20 C -0.167 4.167 21 C -0.066 4.066 22 C -0.170 4.170 23 C -0.074 4.074 24 N -0.200 5.200 25 H 0.251 0.749 26 C -0.013 4.013 27 C -0.154 4.154 28 C -0.120 4.120 29 C -0.169 4.169 30 C -0.086 4.086 31 C -0.106 4.106 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.188 0.812 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.634 -17.304 -13.617 22.079 hybrid contribution 0.608 1.211 -0.655 1.505 sum 2.242 -16.092 -14.271 21.625 Atomic orbital electron populations 1.69921 1.04924 1.25129 1.56666 1.24811 0.95682 0.97669 1.02249 0.86055 0.78677 0.83820 0.77230 1.20493 1.21846 1.21761 1.19108 0.90388 0.82192 1.44024 0.90173 1.45740 1.01267 0.99155 1.86310 1.22261 0.84178 0.87105 1.01216 1.24323 0.97651 0.97666 0.81026 0.87133 1.24155 0.96906 0.98830 0.99203 1.23120 0.96423 0.86257 0.90879 0.87671 1.23267 0.80031 0.98814 1.02021 1.49244 1.09347 1.60046 1.15454 1.20254 0.86110 0.77107 0.85030 1.90651 1.15493 1.56965 1.80742 1.21589 0.99609 1.02251 0.93225 1.19624 0.96059 1.01210 0.89668 1.20339 1.07158 0.93550 0.95903 1.21699 1.00286 0.97768 0.87674 1.41728 1.52633 1.12726 1.12882 0.74906 1.18275 1.01578 0.87406 0.94032 1.19999 1.03258 0.92362 0.99801 1.20782 0.99989 0.97111 0.94159 1.20622 1.01974 0.98981 0.95368 1.20335 0.97289 0.91560 0.99375 1.19135 1.03252 0.95200 0.92965 0.93671 0.93329 0.92492 0.89892 0.91697 0.92868 0.91214 0.89287 0.89490 0.90571 0.90471 0.81187 0.86517 0.85982 0.86147 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.57 55.49 0.59 -26.14 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.07 10.38 -15.06 -0.16 -6.23 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.37 3.07 -154.63 -0.47 -14.85 16 10 C 0.18 4.25 4.88 -0.50 0.00 4.24 16 11 C 0.10 1.87 5.18 -62.56 -0.32 1.55 16 12 H 0.11 2.12 8.06 -51.93 -0.42 1.70 16 13 C -0.15 -2.57 6.82 -22.28 -0.15 -2.72 16 14 C 0.14 2.62 5.52 -62.55 -0.35 2.28 16 15 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 16 C 0.08 1.43 6.01 -1.69 -0.01 1.42 16 17 N -0.61 -11.19 2.94 -156.82 -0.46 -11.65 16 18 C 0.53 9.50 7.90 -10.98 -0.09 9.41 16 19 O -0.56 -11.75 16.33 5.56 0.09 -11.66 16 20 C -0.13 -1.77 4.97 -27.88 -0.14 -1.91 16 21 C -0.03 -0.36 5.03 -27.89 -0.14 -0.50 16 22 C -0.16 -1.95 5.57 -102.71 -0.57 -2.52 16 23 C 0.05 0.51 11.73 -16.73 -0.20 0.32 16 24 N -0.60 -5.37 6.07 -10.65 -0.06 -5.43 16 25 H 0.41 2.40 8.96 -40.82 -0.37 2.04 16 26 C 0.09 1.03 7.28 -83.99 -0.61 0.41 16 27 C -0.13 -1.25 10.08 -39.43 -0.40 -1.64 16 28 C -0.10 -0.90 10.01 -39.54 -0.40 -1.30 16 29 C -0.15 -1.44 9.97 -39.95 -0.40 -1.84 16 30 C -0.07 -0.75 10.05 -39.64 -0.40 -1.15 16 31 C -0.10 -1.23 6.35 -105.14 -0.67 -1.90 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.05 1.34 7.73 -51.93 -0.40 0.94 16 34 H 0.06 1.50 7.47 -51.93 -0.39 1.11 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.08 1.05 8.10 -51.93 -0.42 0.62 16 43 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -33.24 384.91 -11.67 -44.91 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.03 Total: 4.76 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -5.09 Total: -2.37 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.41 Total: -58.07 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.24 -11.67 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032765746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.781 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds