Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99988 * 2 1 4 4 H 1.48498 * 109.46940 * 270.00085 * 3 2 1 5 5 H 1.48501 * 109.46838 * 30.00121 * 3 2 1 6 6 H 1.48498 * 109.46980 * 150.00121 * 3 2 1 7 7 C 1.38811 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00521 * 194.52123 * 7 2 1 9 9 N 1.36939 * 119.99654 * 14.52057 * 7 2 1 10 10 C 1.47601 * 118.64788 * 28.66734 * 9 7 2 11 11 C 1.53947 * 112.14076 * 137.86415 * 10 9 7 12 12 C 1.50879 * 110.09786 * 319.43634 * 11 10 9 13 13 C 1.52565 * 109.35718 * 91.89198 * 12 11 10 14 14 C 1.47097 * 114.32294 * 274.98634 * 13 12 11 15 15 H 1.09002 * 109.32670 * 302.70733 * 14 13 12 16 16 N 1.46506 * 109.32600 * 183.06204 * 14 13 12 17 17 C 1.34771 * 120.00256 * 154.65450 * 16 14 13 18 18 O 1.21546 * 119.99678 * 359.97438 * 17 16 14 19 19 C 1.47907 * 120.00099 * 179.97438 * 17 16 14 20 20 C 1.38894 * 121.11315 * 354.27380 * 19 17 16 21 21 C 1.39261 * 119.57664 * 179.97438 * 20 19 17 22 22 N 1.30996 * 121.88982 * 0.02562 * 21 20 19 23 23 C 1.33536 * 121.82545 * 359.97438 * 22 21 20 24 24 C 1.40715 * 120.97800 * 180.02562 * 23 22 21 25 25 C 1.36053 * 119.74478 * 180.02562 * 24 23 22 26 26 C 1.39355 * 121.05585 * 359.97426 * 25 24 23 27 27 C 1.36250 * 120.83549 * 0.02867 * 26 25 24 28 28 C 1.40096 * 119.64365 * 359.97438 * 27 26 25 29 29 C 1.44670 * 118.80970 * 208.67370 * 9 7 2 30 30 H 0.97000 * 119.99714 * 359.97438 * 1 2 3 31 31 H 1.09000 * 108.94877 * 17.17736 * 10 9 7 32 32 H 1.08993 * 108.94454 * 258.55222 * 10 9 7 33 33 H 1.09006 * 109.36426 * 199.23961 * 11 10 9 34 34 H 1.09004 * 109.26145 * 79.56622 * 11 10 9 35 35 H 1.09003 * 109.49029 * 331.92447 * 12 11 10 36 36 H 1.09000 * 109.48872 * 211.85843 * 12 11 10 37 37 H 1.08994 * 108.51332 * 153.72970 * 13 12 11 38 38 H 1.08999 * 108.38857 * 36.14696 * 13 12 11 39 39 H 0.97003 * 119.99866 * 334.64494 * 16 14 13 40 40 H 1.08001 * 120.20717 * 359.95820 * 20 19 17 41 41 H 1.08008 * 119.05750 * 180.02562 * 21 20 19 42 42 H 1.08005 * 120.12505 * 0.28715 * 24 23 22 43 43 H 1.07999 * 119.47372 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.58188 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.17440 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.61417 * 150.83505 * 29 9 7 47 47 H 1.08994 * 109.32616 * 30.88586 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0645 -1.2172 0.2340 9 7 1.3584 -2.3689 -0.2984 10 6 0.1879 -2.3163 -1.1961 11 6 0.1856 -3.4705 -2.2148 12 6 1.5828 -3.7078 -2.7325 13 6 2.2695 -4.7621 -1.8696 14 6 2.9077 -4.2298 -0.6559 15 1 3.6347 -3.4673 -0.9354 16 7 3.5920 -5.3169 0.0487 17 6 4.6353 -5.0444 0.8572 18 8 5.0088 -3.8968 1.0014 19 6 5.3257 -6.1419 1.5689 20 6 4.8477 -7.4449 1.5150 21 6 5.5234 -8.4537 2.1969 22 7 6.6053 -8.2125 2.8950 23 6 7.1218 -6.9849 2.9916 24 6 8.2854 -6.7460 3.7461 25 6 8.7898 -5.4851 3.8279 26 6 8.1726 -4.4201 3.1746 27 6 7.0447 -4.6135 2.4352 28 6 6.4976 -5.8989 2.3291 29 6 1.8422 -3.6046 0.2779 30 1 -0.4850 0.8401 0.0004 31 1 0.1973 -1.3687 -1.7347 32 1 -0.7206 -2.3716 -0.5965 33 1 -0.4702 -3.2162 -3.0476 34 1 -0.1794 -4.3764 -1.7309 35 1 2.1494 -2.7776 -2.6898 36 1 1.5340 -4.0574 -3.7638 37 1 3.0302 -5.2597 -2.4710 38 1 1.5256 -5.5018 -1.5734 39 1 3.2941 -6.2328 -0.0667 40 1 3.9575 -7.6741 0.9480 41 1 5.1446 -9.4640 2.1489 42 1 8.7785 -7.5613 4.2548 43 1 9.6828 -5.3067 4.4085 44 1 8.5933 -3.4287 3.2561 45 1 6.5754 -3.7806 1.9329 46 1 1.0126 -4.3010 0.3995 47 1 2.2883 -3.3985 1.2508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034296088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = 29.160114 kcal Electronic energy + Delta-G solvation = -29416.638458 eV Core-core repulsion = 25564.135164 eV Total energy + Delta-G solvation = -3852.503294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17358 -40.76897 -39.19995 -38.09564 -36.30819 -34.95382 -34.46834 -32.88829 -31.96056 -31.51948 -30.65775 -27.94767 -26.52518 -25.60716 -24.86737 -24.54656 -23.60887 -21.90418 -21.54299 -20.87108 -19.19113 -18.62869 -18.60707 -18.38452 -17.40908 -16.70380 -16.63390 -16.41799 -16.02195 -15.86852 -15.62694 -15.47985 -15.04702 -14.88414 -14.80265 -14.54372 -14.20677 -14.08924 -14.01729 -13.80336 -13.12965 -13.02653 -12.84653 -12.80511 -12.65743 -12.49547 -12.34496 -12.29326 -12.06269 -11.67521 -11.54585 -11.47514 -11.38420 -11.34806 -11.14805 -10.57256 -10.34743 -10.20586 -9.81631 -9.31124 -8.62951 -7.89365 -5.37610 -0.95311 -0.22900 0.66469 1.40440 1.41234 1.51145 1.74777 1.94073 2.10498 2.48726 3.08769 3.23587 3.28098 3.43874 3.63167 3.68264 3.73735 3.85535 3.91121 4.09952 4.16180 4.21783 4.24562 4.37803 4.41811 4.50343 4.54057 4.60670 4.70340 4.75613 4.77668 4.98450 5.02900 5.04598 5.05868 5.15040 5.22075 5.26219 5.33256 5.35420 5.38703 5.49696 5.54839 5.62459 5.63979 5.71056 5.81972 5.87148 6.39505 6.48428 6.80120 7.17049 7.18226 7.92494 8.28395 9.14595 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.003289 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.860698 B = 8510.888749 C =10183.083426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.040 4.040 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.263 4.263 8 H 0.048 0.952 9 N -0.596 5.596 10 C 0.184 3.816 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.110 4.110 14 C 0.135 3.865 15 H 0.048 0.952 16 N -0.694 5.694 17 C 0.550 3.450 18 O -0.563 6.563 19 C -0.092 4.092 20 C -0.118 4.118 21 C 0.128 3.872 22 N -0.474 5.474 23 C 0.102 3.898 24 C -0.104 4.104 25 C -0.094 4.094 26 C -0.117 4.117 27 C -0.133 4.133 28 C -0.087 4.087 29 C 0.159 3.841 30 H 0.250 0.750 31 H 0.036 0.964 32 H -0.004 1.004 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.416 0.584 40 H 0.182 0.818 41 H 0.211 0.789 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.053 0.947 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.972 -20.861 0.591 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.785 3.215 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.394 4.394 8 H 0.066 0.934 9 N -0.318 5.318 10 C 0.060 3.940 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.147 4.147 14 C 0.028 3.972 15 H 0.066 0.934 16 N -0.346 5.346 17 C 0.337 3.663 18 O -0.443 6.443 19 C -0.103 4.103 20 C -0.138 4.138 21 C -0.044 4.044 22 N -0.183 5.183 23 C -0.018 4.018 24 C -0.123 4.123 25 C -0.113 4.113 26 C -0.135 4.135 27 C -0.152 4.152 28 C -0.090 4.090 29 C 0.030 3.970 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.254 0.746 40 H 0.199 0.801 41 H 0.227 0.773 42 H 0.174 0.826 43 H 0.183 0.817 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.071 0.929 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 11.575 -20.536 1.157 23.602 hybrid contribution -0.373 2.045 -0.231 2.092 sum 11.202 -18.491 0.926 21.639 Atomic orbital electron populations 1.70194 1.06173 1.25687 1.55489 1.25674 0.96028 1.00948 1.00902 0.85439 0.77973 0.80325 0.77783 1.20698 1.21535 1.20545 1.19328 0.91634 0.86336 1.42095 0.93448 1.43708 1.33412 1.02293 1.52355 1.20856 0.86986 0.96293 0.89902 1.21943 0.97473 0.98905 0.98584 1.20807 0.95607 0.98405 0.98815 1.20533 1.00649 0.98918 0.94635 1.20796 0.94457 0.88235 0.93761 0.93365 1.45805 1.31324 1.11605 1.45829 1.18483 0.80418 0.87990 0.79402 1.90662 1.65866 1.23606 1.64122 1.20395 0.96065 0.94837 0.98995 1.22872 1.01380 0.90788 0.98785 1.23665 0.89394 1.01322 0.90058 1.67865 1.12397 1.21071 1.16953 1.19157 0.96802 0.88128 0.97749 1.21112 0.94024 0.98674 0.98441 1.21330 1.00448 0.91555 0.97971 1.21403 0.94983 1.00891 0.96196 1.22009 0.96784 0.97243 0.99141 1.18884 0.95727 0.95656 0.98734 1.21008 0.94595 0.87913 0.93476 0.94068 0.94588 0.98623 0.91092 0.91340 0.94341 0.89764 0.90450 0.89675 0.74573 0.80098 0.77296 0.82555 0.81713 0.83852 0.84208 0.92917 0.96934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 11.09 21.65 0.24 -55.69 16 2 C -0.04 -2.31 4.88 84.86 0.41 -1.89 16 3 Si 0.96 47.46 29.58 68.60 2.03 49.49 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 7 C -0.26 -15.32 9.43 84.03 0.79 -14.53 16 8 H 0.05 2.91 7.87 -2.91 -0.02 2.89 16 9 N -0.60 -30.19 2.26 -698.18 -1.58 -31.77 16 10 C 0.18 8.73 4.66 86.49 0.40 9.14 16 11 C -0.13 -4.35 5.70 30.22 0.17 -4.18 16 12 C -0.10 -2.98 5.51 29.76 0.16 -2.82 16 13 C -0.11 -2.85 4.55 28.61 0.13 -2.72 16 14 C 0.13 4.57 2.34 43.79 0.10 4.67 16 15 H 0.05 2.09 7.57 -2.39 -0.02 2.07 16 16 N -0.69 -18.40 5.01 -451.09 -2.26 -20.66 16 17 C 0.55 17.83 7.70 86.81 0.67 18.50 16 18 O -0.56 -24.03 13.18 -3.86 -0.05 -24.08 16 19 C -0.09 -2.43 5.94 -19.68 -0.12 -2.55 16 20 C -0.12 -1.95 9.60 22.67 0.22 -1.74 16 21 C 0.13 1.98 11.14 85.06 0.95 2.92 16 22 N -0.47 -10.46 10.30 -188.73 -1.94 -12.40 16 23 C 0.10 2.60 6.61 40.35 0.27 2.87 16 24 C -0.10 -2.15 9.98 22.37 0.22 -1.93 16 25 C -0.09 -1.75 9.94 22.03 0.22 -1.53 16 26 C -0.12 -2.78 9.96 22.08 0.22 -2.56 16 27 C -0.13 -4.13 9.25 22.26 0.21 -3.92 16 28 C -0.09 -2.55 5.76 -21.10 -0.12 -2.67 16 29 C 0.16 6.72 5.24 87.36 0.46 7.18 16 30 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.04 1.94 6.46 -2.39 -0.02 1.92 16 32 H 0.00 -0.23 8.01 -2.39 -0.02 -0.25 16 33 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.07 2.00 7.31 -2.39 -0.02 1.98 16 35 H 0.04 1.48 7.48 -2.39 -0.02 1.47 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.77 7.34 -2.39 -0.02 1.76 16 39 H 0.42 6.89 6.75 -92.71 -0.63 6.26 16 40 H 0.18 1.40 6.55 -2.91 -0.02 1.39 16 41 H 0.21 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 45 H 0.14 5.20 4.98 -2.91 -0.01 5.19 16 46 H 0.05 1.99 8.05 -2.39 -0.02 1.98 16 47 H 0.01 0.60 7.97 -2.39 -0.02 0.58 16 Total: -1.00 -79.48 372.26 2.17 -77.31 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.37 Total: 15.55 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.37 Total: 2.25 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -5.55 Total: -120.53 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -79.48 2.17 -77.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034296088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.474 kcal (2) G-P(sol) polarization free energy of solvation -79.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds