Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21566 * 119.99788 * 0.02562 * 17 16 14 19 19 C 1.47768 * 119.99944 * 179.97438 * 17 16 14 20 20 C 1.40627 * 119.80672 * 359.97438 * 19 17 16 21 21 C 1.35706 * 120.92253 * 179.97438 * 20 19 17 22 22 C 1.40755 * 120.11391 * 359.97438 * 21 20 19 23 23 N 1.33648 * 120.84139 * 180.02562 * 22 21 20 24 24 C 1.31122 * 121.39539 * 179.97438 * 23 22 21 25 25 C 1.39318 * 121.77112 * 359.97438 * 24 23 22 26 26 C 1.36572 * 119.90151 * 0.02562 * 25 24 23 27 27 C 1.40891 * 118.16158 * 0.02562 * 26 25 24 28 28 C 1.38544 * 119.80189 * 179.72632 * 19 17 16 29 29 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 32 32 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 33 33 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 34 34 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 35 35 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 36 36 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 37 37 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 38 38 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 39 39 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 40 40 H 1.08004 * 119.53996 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.93961 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.11361 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04245 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.92194 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.30408 * 0.02562 * 28 19 17 46 46 H 1.09007 * 108.15424 * 33.30548 * 29 9 7 47 47 H 1.08997 * 108.16212 * 149.87211 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3017 -1.4248 19 6 3.7970 -4.1953 -3.4769 20 6 3.0306 -3.3546 -4.3036 21 6 3.4753 -2.9922 -5.5334 22 6 4.7194 -3.4569 -5.9998 23 7 5.1716 -3.1086 -7.2083 24 6 6.3291 -3.5348 -7.6534 25 6 7.1453 -4.3691 -6.8928 26 6 6.7444 -4.7639 -5.6484 27 6 5.4997 -4.3049 -5.1741 28 6 5.0276 -4.6665 -3.9046 29 6 2.1839 -3.5380 0.6659 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8346 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2689 35 1 0.2634 -4.6389 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3695 -5.2943 -0.8472 38 1 -0.2633 -3.5249 -0.9671 39 1 1.5691 -3.5331 -2.2918 40 1 2.0748 -2.9923 -3.9549 41 1 2.8735 -2.3461 -6.1554 42 1 6.6588 -3.2300 -8.6356 43 1 8.0934 -4.7039 -7.2872 44 1 7.3639 -5.4108 -5.0449 45 1 5.6166 -5.3092 -3.2671 46 1 3.2404 -3.3972 0.4372 47 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034381207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = 52.519112 kcal Electronic energy + Delta-G solvation = -29547.275520 eV Core-core repulsion = 25695.785148 eV Total energy + Delta-G solvation = -3851.490372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00490 -39.62612 -38.11075 -36.66789 -34.56677 -33.67845 -33.32419 -31.48268 -30.81968 -30.18273 -29.69568 -26.22598 -25.05103 -24.07195 -23.91222 -22.83872 -22.16299 -20.97081 -20.19805 -19.34723 -18.28933 -17.77261 -17.16619 -16.96920 -15.95323 -15.67832 -15.21583 -14.74601 -14.67680 -14.55711 -14.29213 -14.08534 -13.79585 -13.63863 -13.52244 -13.48222 -13.24973 -12.72573 -12.45483 -12.21318 -12.14132 -11.89682 -11.67893 -11.53916 -11.08811 -10.88770 -10.77210 -10.59713 -10.42612 -10.19737 -10.03981 -9.84011 -9.78073 -9.70562 -9.59777 -9.46931 -8.98461 -8.74581 -8.39657 -8.15968 -6.98357 -6.19172 -3.03938 0.11098 0.53678 1.78385 2.41437 3.41324 3.50717 3.53276 3.58045 3.73544 4.02865 4.08412 4.41335 4.50591 4.59550 4.66071 4.79127 4.89919 5.02890 5.05784 5.12820 5.19066 5.28692 5.29671 5.38312 5.59397 5.65108 5.74301 5.79454 5.88415 5.91311 5.95777 5.98529 6.14985 6.21222 6.22639 6.30420 6.33281 6.35878 6.56773 6.61734 6.65792 6.66203 6.83642 6.88161 7.03366 7.21336 7.23148 7.69977 7.88963 8.00115 8.51072 8.54822 9.05617 9.83548 10.28182 11.11147 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003422 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.296824 B = 8179.448438 C = 9520.210687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.014 4.014 3 Si 1.033 2.967 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.353 4.353 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.114 3.886 15 H 0.076 0.924 16 N -0.695 5.695 17 C 0.554 3.446 18 O -0.551 6.551 19 C -0.122 4.122 20 C -0.069 4.069 21 C -0.098 4.098 22 C 0.141 3.859 23 N -0.477 5.477 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.046 4.046 27 C -0.113 4.113 28 C -0.033 4.033 29 C 0.154 3.846 30 H 0.273 0.727 31 H 0.024 0.976 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.159 0.841 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.041 0.959 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.771 -10.433 -10.451 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.216 4.216 3 Si 0.863 3.137 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.481 4.481 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.006 3.994 15 H 0.094 0.906 16 N -0.344 5.344 17 C 0.341 3.659 18 O -0.430 6.430 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.117 4.117 22 C 0.020 3.980 23 N -0.185 5.185 24 C -0.038 4.038 25 C -0.204 4.204 26 C -0.072 4.072 27 C -0.115 4.115 28 C -0.053 4.053 29 C 0.023 3.977 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.176 0.824 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.060 0.940 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.426 -8.677 -10.274 14.904 hybrid contribution 0.527 -1.850 -0.060 1.924 sum 6.952 -10.526 -10.335 16.308 Atomic orbital electron populations 1.70877 1.07183 1.30582 1.45627 1.25364 0.95754 1.00524 0.99960 0.83988 0.75746 0.77578 0.76368 1.21336 1.22218 1.22319 1.19885 1.09283 0.92452 1.26463 0.91862 1.44369 1.38936 1.05002 1.42449 1.20599 0.86866 1.01579 0.90451 1.21093 0.99427 0.94528 1.02391 1.20941 0.99857 0.97480 0.96543 1.21672 0.94135 1.01188 0.98011 1.22834 0.93635 0.99458 0.83459 0.90557 1.45937 1.19662 1.49836 1.18927 1.18063 0.81671 0.80492 0.85720 1.90729 1.57355 1.38158 1.56806 1.20093 0.96254 1.00686 0.95428 1.21060 0.99711 0.94955 0.93174 1.20685 0.94412 1.00448 0.96157 1.18997 0.94734 0.94312 0.89992 1.68065 1.14705 1.22291 1.13422 1.23010 0.89268 0.92101 0.99406 1.21872 1.01917 1.00802 0.95786 1.21556 0.93912 0.96240 0.95524 1.18804 0.96306 1.00514 0.95866 1.21410 0.94204 0.96217 0.93438 1.20615 0.96259 0.86222 0.94615 0.91390 0.95811 0.88739 0.94170 0.91040 0.91723 0.92588 0.93585 0.90986 0.76513 0.84590 0.84115 0.82371 0.84426 0.84124 0.83795 0.94044 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.73 11.99 55.49 0.67 -24.07 16 2 C -0.01 -0.36 4.53 -17.43 -0.08 -0.44 16 3 Si 1.03 24.52 30.06 -169.99 -5.11 19.41 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.35 -9.19 9.46 -15.06 -0.14 -9.33 16 8 H 0.06 1.73 8.05 -52.48 -0.42 1.31 16 9 N -0.59 -13.58 2.62 -175.40 -0.46 -14.04 16 10 C 0.13 2.82 5.22 -5.20 -0.03 2.79 16 11 C -0.14 -2.56 4.96 -30.18 -0.15 -2.71 16 12 C -0.11 -1.78 5.76 -28.40 -0.16 -1.94 16 13 C -0.11 -1.84 5.23 -27.19 -0.14 -1.98 16 14 C 0.11 2.03 2.91 -66.23 -0.19 1.84 16 15 H 0.08 1.36 7.57 -51.93 -0.39 0.97 16 16 N -0.69 -12.00 5.03 -53.12 -0.27 -12.26 16 17 C 0.55 9.80 7.58 -12.36 -0.09 9.71 16 18 O -0.55 -11.12 15.97 5.31 0.08 -11.03 16 19 C -0.12 -1.86 5.87 -104.99 -0.62 -2.47 16 20 C -0.07 -0.95 9.44 -39.59 -0.37 -1.32 16 21 C -0.10 -1.32 9.95 -39.54 -0.39 -1.71 16 22 C 0.14 1.94 6.61 -84.78 -0.56 1.38 16 23 N -0.48 -6.17 10.33 -10.92 -0.11 -6.28 16 24 C 0.13 1.29 11.15 -17.45 -0.19 1.10 16 25 C -0.18 -1.52 10.03 -39.78 -0.40 -1.92 16 26 C -0.05 -0.45 9.89 -39.18 -0.39 -0.84 16 27 C -0.11 -1.45 5.74 -106.81 -0.61 -2.06 16 28 C -0.03 -0.45 9.35 -38.74 -0.36 -0.82 16 29 C 0.15 3.18 4.75 -4.93 -0.02 3.16 16 30 H 0.27 7.25 4.95 -40.82 -0.20 7.04 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.09 2.36 5.61 -51.93 -0.29 2.06 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.51 4.65 -51.93 -0.24 1.27 16 35 H 0.06 1.04 6.28 -51.93 -0.33 0.72 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.07 1.32 6.58 -51.93 -0.34 0.98 16 39 H 0.40 6.55 6.43 -40.82 -0.26 6.29 16 40 H 0.14 1.74 6.35 -52.48 -0.33 1.40 16 41 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.14 1.88 7.62 -52.49 -0.40 1.48 16 46 H 0.04 0.96 7.81 -51.93 -0.41 0.55 16 47 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -31.10 369.29 -10.70 -41.80 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.15 Total: 8.48 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -4.91 Total: -7.57 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.17 Total: -56.65 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.11 Total: 19.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.10 -10.70 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034381207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.320 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds