Wall clock time and date at job start Sat Apr 11 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21566 * 119.99788 * 0.02562 * 17 16 14 19 19 C 1.47768 * 119.99944 * 179.97438 * 17 16 14 20 20 C 1.40627 * 119.80672 * 359.97438 * 19 17 16 21 21 C 1.35706 * 120.92253 * 179.97438 * 20 19 17 22 22 C 1.40755 * 120.11391 * 359.97438 * 21 20 19 23 23 N 1.33648 * 120.84139 * 180.02562 * 22 21 20 24 24 C 1.31122 * 121.39539 * 179.97438 * 23 22 21 25 25 C 1.39318 * 121.77112 * 359.97438 * 24 23 22 26 26 C 1.36572 * 119.90151 * 0.02562 * 25 24 23 27 27 C 1.40891 * 118.16158 * 0.02562 * 26 25 24 28 28 C 1.38544 * 119.80189 * 179.72632 * 19 17 16 29 29 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 32 32 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 33 33 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 34 34 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 35 35 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 36 36 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 37 37 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 38 38 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 39 39 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 40 40 H 1.08004 * 119.53996 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.93961 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.11361 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04245 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.92194 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.30408 * 0.02562 * 28 19 17 46 46 H 1.09007 * 108.15424 * 33.30548 * 29 9 7 47 47 H 1.08997 * 108.16212 * 149.87211 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3017 -1.4248 19 6 3.7970 -4.1953 -3.4769 20 6 3.0306 -3.3546 -4.3036 21 6 3.4753 -2.9922 -5.5334 22 6 4.7194 -3.4569 -5.9998 23 7 5.1716 -3.1086 -7.2083 24 6 6.3291 -3.5348 -7.6534 25 6 7.1453 -4.3691 -6.8928 26 6 6.7444 -4.7639 -5.6484 27 6 5.4997 -4.3049 -5.1741 28 6 5.0276 -4.6665 -3.9046 29 6 2.1839 -3.5380 0.6659 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8346 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2689 35 1 0.2634 -4.6389 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3695 -5.2943 -0.8472 38 1 -0.2633 -3.5249 -0.9671 39 1 1.5691 -3.5331 -2.2918 40 1 2.0748 -2.9923 -3.9549 41 1 2.8735 -2.3461 -6.1554 42 1 6.6588 -3.2300 -8.6356 43 1 8.0934 -4.7039 -7.2872 44 1 7.3639 -5.4108 -5.0449 45 1 5.6166 -5.3092 -3.2671 46 1 3.2404 -3.3972 0.4372 47 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034381207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:07 Heat of formation + Delta-G solvation = 34.816303 kcal Electronic energy + Delta-G solvation = -29548.043171 eV Core-core repulsion = 25695.785148 eV Total energy + Delta-G solvation = -3852.258023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.97712 -40.97167 -39.61828 -37.73549 -36.16221 -34.97268 -34.51879 -33.08895 -32.25767 -31.17819 -31.00092 -27.90806 -26.35964 -25.37395 -24.89307 -24.49936 -23.18229 -22.39596 -21.63780 -20.90780 -19.39910 -19.01894 -18.82923 -17.95811 -17.12796 -16.94599 -16.68705 -16.29476 -16.07334 -15.58551 -15.55435 -15.46284 -15.19202 -15.02814 -14.98609 -14.49636 -14.32437 -14.04556 -13.94543 -13.78869 -13.47653 -13.11534 -12.78272 -12.73447 -12.54595 -12.50855 -12.45063 -12.16517 -11.94924 -11.75567 -11.63950 -11.54274 -11.28627 -11.17997 -11.03046 -10.54282 -10.39871 -10.06331 -9.85001 -9.38665 -8.85683 -8.26698 -5.06746 -0.83611 -0.38739 0.84295 1.37339 1.57994 1.63152 1.82415 2.14778 2.30948 2.66884 3.04595 3.13918 3.23162 3.46022 3.50679 3.59837 3.69452 3.80208 3.93376 3.97316 4.00589 4.01660 4.22283 4.25125 4.38762 4.43691 4.47782 4.49136 4.67696 4.71142 4.74296 4.83869 4.92313 4.93335 4.97998 5.06620 5.12260 5.14478 5.16019 5.22601 5.29982 5.39498 5.44124 5.49456 5.59819 5.63180 5.72319 5.92675 6.49147 6.53178 6.85771 7.10658 7.15312 7.87696 8.32421 9.06159 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003422 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.296824 B = 8179.448438 C = 9520.210687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.051 4.051 3 Si 1.074 2.926 4 H -0.292 1.292 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.350 4.350 8 H 0.042 0.958 9 N -0.597 5.597 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.103 4.103 14 C 0.121 3.879 15 H 0.082 0.918 16 N -0.695 5.695 17 C 0.553 3.447 18 O -0.581 6.581 19 C -0.148 4.148 20 C -0.075 4.075 21 C -0.105 4.105 22 C 0.125 3.875 23 N -0.510 5.510 24 C 0.139 3.861 25 C -0.169 4.169 26 C -0.052 4.052 27 C -0.129 4.129 28 C -0.027 4.027 29 C 0.157 3.843 30 H 0.272 0.728 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.402 0.598 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.196 0.804 43 H 0.181 0.819 44 H 0.168 0.832 45 H 0.148 0.852 46 H 0.009 0.991 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 -11.774 -11.858 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.251 4.251 3 Si 0.903 3.097 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.479 4.479 8 H 0.060 0.940 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.141 4.141 14 C 0.013 3.987 15 H 0.100 0.900 16 N -0.343 5.343 17 C 0.342 3.658 18 O -0.464 6.464 19 C -0.151 4.151 20 C -0.095 4.095 21 C -0.124 4.124 22 C 0.004 3.996 23 N -0.218 5.218 24 C -0.033 4.033 25 C -0.188 4.188 26 C -0.078 4.078 27 C -0.131 4.131 28 C -0.047 4.047 29 C 0.028 3.972 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.238 0.762 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.212 0.788 43 H 0.199 0.801 44 H 0.185 0.815 45 H 0.166 0.834 46 H 0.028 0.972 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.689 -10.035 -11.688 17.217 hybrid contribution 0.322 -1.477 0.254 1.533 sum 8.012 -11.512 -11.434 18.096 Atomic orbital electron populations 1.70905 1.07589 1.30730 1.47427 1.26126 0.95992 1.02522 1.00415 0.83389 0.74790 0.75029 0.76542 1.21801 1.21441 1.22100 1.19817 1.08168 0.93656 1.26228 0.93975 1.44399 1.39749 1.05443 1.42399 1.20552 0.87575 1.00166 0.90898 1.20931 0.98452 0.96131 1.01165 1.20932 1.01503 0.95439 0.96085 1.21600 0.92644 1.01497 0.98397 1.22643 0.94727 0.98528 0.82803 0.90019 1.45939 1.19790 1.49842 1.18767 1.18450 0.81256 0.79712 0.86402 1.90690 1.58098 1.39647 1.57949 1.19968 0.97567 1.02840 0.94711 1.21024 0.99829 0.95239 0.93455 1.20833 0.94929 1.00588 0.96000 1.19183 0.94970 0.94697 0.90778 1.68112 1.16657 1.23853 1.13219 1.23796 0.88041 0.90718 1.00713 1.22350 1.02932 0.98893 0.94618 1.21950 0.92863 0.96361 0.96602 1.18993 0.97772 1.00974 0.95335 1.21540 0.93562 0.95575 0.94013 1.20598 0.94416 0.85977 0.96239 0.91537 0.94431 0.92054 0.92538 0.93524 0.91342 0.89426 0.90848 0.93117 0.76162 0.84454 0.83251 0.78773 0.80121 0.81472 0.83442 0.97247 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.86 11.99 21.65 0.26 -51.61 16 2 C -0.05 -2.78 4.53 84.86 0.38 -2.39 16 3 Si 1.07 50.77 30.06 68.60 2.06 52.83 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 7 C -0.35 -18.77 9.46 84.04 0.80 -17.98 16 8 H 0.04 2.41 8.05 -2.91 -0.02 2.38 16 9 N -0.60 -28.25 2.62 -708.84 -1.86 -30.11 16 10 C 0.13 5.78 5.22 83.58 0.44 6.22 16 11 C -0.13 -4.74 4.96 28.36 0.14 -4.60 16 12 C -0.10 -3.06 5.76 29.51 0.17 -2.89 16 13 C -0.10 -3.27 5.23 30.30 0.16 -3.11 16 14 C 0.12 4.30 2.91 46.09 0.13 4.44 16 15 H 0.08 2.86 7.57 -2.38 -0.02 2.85 16 16 N -0.69 -24.76 5.03 -440.24 -2.22 -26.98 16 17 C 0.55 20.34 7.58 86.76 0.66 21.00 16 18 O -0.58 -24.20 15.97 -3.92 -0.06 -24.27 16 19 C -0.15 -4.70 5.87 -20.10 -0.12 -4.82 16 20 C -0.08 -2.19 9.44 22.27 0.21 -1.98 16 21 C -0.11 -2.89 9.95 22.30 0.22 -2.67 16 22 C 0.12 3.38 6.61 40.35 0.27 3.65 16 23 N -0.51 -12.44 10.33 -188.45 -1.95 -14.38 16 24 C 0.14 2.21 11.15 85.06 0.95 3.16 16 25 C -0.17 -2.10 10.03 22.14 0.22 -1.88 16 26 C -0.05 -0.88 9.89 22.53 0.22 -0.65 16 27 C -0.13 -3.20 5.74 -21.28 -0.12 -3.32 16 28 C -0.03 -0.76 9.35 22.82 0.21 -0.55 16 29 C 0.16 6.61 4.75 87.42 0.41 7.03 16 30 H 0.27 14.84 4.95 -92.71 -0.46 14.38 16 31 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.06 3.12 5.61 -2.38 -0.01 3.11 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.99 4.65 -2.39 -0.01 1.98 16 35 H 0.07 2.03 6.28 -2.39 -0.01 2.02 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.05 1.85 6.58 -2.39 -0.02 1.84 16 39 H 0.40 13.80 6.43 -92.71 -0.60 13.20 16 40 H 0.14 3.77 6.35 -2.91 -0.02 3.75 16 41 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 42 H 0.20 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.15 3.90 7.62 -2.91 -0.02 3.88 16 46 H 0.01 0.44 7.81 -2.38 -0.02 0.43 16 47 H 0.05 1.98 6.89 -2.39 -0.02 1.96 16 Total: -1.00 -69.93 369.29 2.32 -67.61 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.72 Total: 28.25 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.36 Total: -1.34 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -5.76 Total: -123.08 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.06 Total: 52.83 kcal Total: -69.93 2.32 -67.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034381207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.425 kcal (2) G-P(sol) polarization free energy of solvation -69.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds