Wall clock time and date at job start Sat Apr 11 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48496 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46935 * 299.99664 * 3 2 1 6 6 H 1.48498 * 109.47332 * 59.99427 * 3 2 1 7 7 C 1.38811 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00023 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00334 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46374 * 324.99638 * 10 9 7 12 12 C 1.52999 * 109.47249 * 84.99529 * 10 9 7 13 13 C 1.52999 * 109.47097 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47012 * 300.00390 * 13 12 10 15 15 H 1.09001 * 109.46926 * 299.99940 * 14 13 12 16 16 N 1.46498 * 109.46821 * 180.02562 * 14 13 12 17 17 C 1.34773 * 120.00416 * 84.72417 * 16 14 13 18 18 O 1.21595 * 119.99775 * 0.27003 * 17 16 14 19 19 C 1.47556 * 120.00209 * 180.27477 * 17 16 14 20 20 C 1.38692 * 120.38693 * 354.05081 * 19 17 16 21 21 C 1.38964 * 120.53730 * 179.97438 * 20 19 17 22 22 C 1.36208 * 121.23917 * 0.03061 * 21 20 19 23 23 C 1.40719 * 120.19929 * 359.97321 * 22 21 20 24 24 N 1.33689 * 120.94089 * 179.97438 * 23 22 21 25 25 C 1.31059 * 121.34021 * 180.02562 * 24 23 22 26 26 C 1.39331 * 121.71026 * 0.02562 * 25 24 23 27 27 C 1.36678 * 119.87049 * 359.97438 * 26 25 24 28 28 C 1.40482 * 118.16671 * 359.74510 * 27 26 25 29 29 C 1.52999 * 109.47507 * 59.99861 * 14 13 12 30 30 C 1.52993 * 109.47336 * 205.00175 * 10 9 7 31 31 H 0.97000 * 120.00276 * 0.02562 * 1 2 3 32 32 H 0.97008 * 119.99825 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47085 * 300.00377 * 12 10 9 34 34 H 1.09001 * 109.46963 * 60.00320 * 12 10 9 35 35 H 1.09001 * 109.47301 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.47226 * 60.00146 * 13 12 10 37 37 H 0.97008 * 119.99850 * 264.99100 * 16 14 13 38 38 H 1.08003 * 119.73090 * 359.97438 * 20 19 17 39 39 H 1.07995 * 119.38385 * 180.02562 * 21 20 19 40 40 H 1.07993 * 119.90404 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.14583 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.07142 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.91936 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.46963 * 60.00101 * 29 14 13 45 45 H 1.08993 * 109.47045 * 179.97438 * 29 14 13 46 46 H 1.09001 * 109.47293 * 59.99358 * 30 10 9 47 47 H 1.09001 * 109.46829 * 299.99650 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9688 -3.5504 -0.5890 12 6 2.4222 -4.0356 1.4375 13 6 3.1877 -5.3603 1.4374 14 6 2.3110 -6.4559 0.8276 15 1 1.4003 -6.5625 1.4170 16 7 3.0438 -7.7244 0.8281 17 6 3.0394 -8.5049 1.9268 18 8 2.4231 -8.1584 2.9161 19 6 3.7825 -9.7796 1.9293 20 6 4.3856 -10.2424 0.7693 21 6 5.0866 -11.4423 0.7683 22 6 5.2011 -12.1945 1.8980 23 6 4.6054 -11.7644 3.0981 24 7 4.7080 -12.4912 4.2155 25 6 4.1559 -12.0983 5.3373 26 6 3.4365 -10.9081 5.4221 27 6 3.2942 -10.1185 4.3156 28 6 3.8931 -10.5417 3.1174 29 6 1.9470 -6.0771 -0.6094 30 6 1.1811 -4.7521 -0.6091 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 3.0471 -3.2552 1.8718 34 1 1.5115 -4.1418 2.0270 35 1 3.4466 -5.6304 2.4612 36 1 4.0984 -5.2536 0.8480 37 1 3.5354 -8.0008 0.0388 38 1 4.3098 -9.6656 -0.1406 39 1 5.5494 -11.7848 -0.1454 40 1 5.7506 -13.1238 1.8727 41 1 4.2614 -12.7131 6.2191 42 1 2.9928 -10.6096 6.3604 43 1 2.7404 -9.1925 4.3622 44 1 2.8577 -5.9704 -1.1988 45 1 1.3228 -6.8578 -1.0439 46 1 0.9217 -4.4822 -1.6328 47 1 0.2704 -4.8584 -0.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034703366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:49 Heat of formation + Delta-G solvation = 24.194417 kcal Electronic energy + Delta-G solvation = -28258.147341 eV Core-core repulsion = 24405.428719 eV Total energy + Delta-G solvation = -3852.718623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40457 -39.90605 -38.08864 -37.24910 -35.03735 -33.61951 -33.18191 -31.12166 -30.91084 -30.45091 -30.08755 -27.39149 -25.02755 -24.04911 -23.75077 -23.14824 -22.39311 -21.11324 -20.75282 -19.55432 -18.56225 -17.93276 -17.19111 -17.04022 -16.46911 -16.17444 -15.35190 -15.24532 -15.12814 -14.71125 -14.49506 -14.21135 -13.96471 -13.80054 -13.58832 -13.48025 -13.17067 -13.05184 -12.58904 -12.47877 -12.13710 -12.04145 -11.85173 -11.73134 -11.44749 -11.10358 -10.85318 -10.81233 -10.77453 -10.69844 -10.38482 -10.17271 -10.13819 -9.79445 -9.65001 -9.45414 -9.18984 -9.13209 -8.87163 -8.63482 -6.94989 -5.76447 -3.04971 -0.22334 0.44513 1.42965 2.30465 2.86930 2.96610 3.42854 3.48556 3.50721 3.79899 3.89813 4.21528 4.29715 4.43525 4.51584 4.58681 4.71888 4.75153 4.83232 4.96353 4.98923 5.07881 5.22744 5.38265 5.45484 5.49847 5.55897 5.59192 5.63050 5.67982 5.75065 5.83300 5.83634 5.84640 5.97273 6.01108 6.15131 6.20121 6.25540 6.29418 6.41171 6.45278 6.53593 6.60951 6.69713 6.96646 7.12964 7.28785 7.54423 7.70753 7.99343 8.42397 9.53438 10.11927 10.46276 11.46342 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.002022 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.293591 B =13847.199806 C =14367.918477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.144 3.856 15 H 0.091 0.909 16 N -0.715 5.715 17 C 0.560 3.440 18 O -0.531 6.531 19 C -0.109 4.109 20 C -0.076 4.076 21 C -0.112 4.112 22 C -0.067 4.067 23 C 0.118 3.882 24 N -0.480 5.480 25 C 0.133 3.867 26 C -0.179 4.179 27 C -0.060 4.060 28 C -0.067 4.067 29 C -0.119 4.119 30 C -0.120 4.120 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.398 0.602 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.139 0.861 43 H 0.180 0.820 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.450 -27.336 3.128 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.041 3.959 15 H 0.109 0.891 16 N -0.365 5.365 17 C 0.347 3.653 18 O -0.410 6.410 19 C -0.113 4.113 20 C -0.095 4.095 21 C -0.132 4.132 22 C -0.086 4.086 23 C -0.003 4.003 24 N -0.188 5.188 25 C -0.039 4.039 26 C -0.199 4.199 27 C -0.085 4.085 28 C -0.070 4.070 29 C -0.158 4.158 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.233 0.767 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.157 0.843 43 H 0.197 0.803 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.615 -27.689 3.655 29.538 hybrid contribution -0.013 1.549 -0.231 1.566 sum 9.603 -26.140 3.424 28.057 Atomic orbital electron populations 1.69670 1.05085 1.25493 1.57903 1.24745 0.95516 0.97682 1.03176 0.86142 0.78777 0.84263 0.77171 1.20594 1.21916 1.21907 1.19281 0.90987 0.84138 1.42332 0.91180 1.42439 1.05800 0.99800 1.88546 1.20239 0.94295 0.85994 0.92775 0.93598 1.22227 0.99772 0.94428 1.00864 1.21905 0.98580 0.95357 1.00466 1.21194 0.95503 0.81395 0.97793 0.89139 1.46114 1.52812 1.21968 1.15631 1.18089 0.80530 0.83316 0.83348 1.90582 1.44147 1.73628 1.32637 1.19943 1.01447 0.95872 0.94049 1.21446 0.94875 0.96050 0.97148 1.20827 0.99112 0.94450 0.98778 1.21012 0.97235 0.99914 0.90435 1.18867 0.96978 0.91116 0.93374 1.68056 1.19765 1.32286 0.98702 1.23029 0.91364 0.93935 0.95582 1.22092 1.01232 0.96272 1.00307 1.22709 0.94191 1.00965 0.90595 1.18645 0.99047 0.95110 0.94187 1.21764 1.00911 0.98409 0.94684 1.21759 0.98937 0.93362 1.01857 0.93593 0.78300 0.91757 0.92441 0.92308 0.92253 0.76729 0.84875 0.84442 0.84311 0.82317 0.84280 0.80344 0.91507 0.91794 0.91286 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.87 5.12 -53.43 -0.27 -18.14 16 10 C 0.18 3.36 2.77 -67.94 -0.19 3.17 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 13 C -0.12 -1.76 5.49 -26.73 -0.15 -1.91 16 14 C 0.14 1.79 2.45 -67.93 -0.17 1.63 16 15 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 16 N -0.72 -7.27 5.03 -54.84 -0.28 -7.54 16 17 C 0.56 6.73 7.69 -12.46 -0.10 6.64 16 18 O -0.53 -7.98 13.07 5.28 0.07 -7.91 16 19 C -0.11 -1.14 5.90 -104.66 -0.62 -1.76 16 20 C -0.08 -0.56 9.51 -39.14 -0.37 -0.93 16 21 C -0.11 -0.72 9.92 -40.04 -0.40 -1.12 16 22 C -0.07 -0.55 9.96 -39.38 -0.39 -0.95 16 23 C 0.12 1.28 6.60 -84.87 -0.56 0.72 16 24 N -0.48 -5.22 10.34 -10.99 -0.11 -5.33 16 25 C 0.13 1.17 11.15 -17.47 -0.19 0.98 16 26 C -0.18 -1.61 10.03 -39.74 -0.40 -2.01 16 27 C -0.06 -0.68 9.29 -39.30 -0.37 -1.04 16 28 C -0.07 -0.77 5.76 -106.53 -0.61 -1.39 16 29 C -0.12 -1.38 5.39 -26.71 -0.14 -1.52 16 30 C -0.12 -1.85 5.39 -26.71 -0.14 -1.99 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 2.82 6.67 -40.82 -0.27 2.55 16 38 H 0.13 0.59 6.43 -52.48 -0.34 0.25 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.18 2.26 4.96 -52.51 -0.26 2.00 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -33.52 380.78 -10.97 -44.49 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.62 Total: 9.90 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -5.19 Total: -11.13 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.06 Total: -58.42 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.07 Total: -7.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.52 -10.97 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034703366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.682 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds