Wall clock time and date at job start Sat Apr 11 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99851 * 2 1 4 4 H 1.48497 * 109.47295 * 270.00182 * 3 2 1 5 5 H 1.48501 * 109.47268 * 30.00398 * 3 2 1 6 6 H 1.48506 * 109.47101 * 149.99923 * 3 2 1 7 7 C 1.38817 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99561 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.46854 * 324.99733 * 10 9 7 12 12 C 1.53003 * 109.46833 * 84.99962 * 10 9 7 13 13 C 1.53000 * 109.46637 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47105 * 299.99438 * 13 12 10 15 15 H 1.09000 * 109.47379 * 300.00504 * 14 13 12 16 16 N 1.46499 * 109.47296 * 180.02562 * 14 13 12 17 17 C 1.34775 * 120.00068 * 85.00309 * 16 14 13 18 18 O 1.21540 * 119.99758 * 359.97438 * 17 16 14 19 19 C 1.47951 * 119.99727 * 180.02562 * 17 16 14 20 20 N 1.32197 * 120.16048 * 354.70877 * 19 17 16 21 21 C 1.32027 * 122.68129 * 179.97438 * 20 19 17 22 22 C 1.36690 * 122.02749 * 0.02562 * 21 20 19 23 23 C 1.40531 * 118.84917 * 0.02562 * 22 21 20 24 24 C 1.40321 * 122.22167 * 179.97438 * 23 22 21 25 25 C 1.36210 * 119.45133 * 179.97438 * 24 23 22 26 26 C 1.39385 * 121.00227 * 359.97438 * 25 24 23 27 27 C 1.36256 * 121.08147 * 359.97438 * 26 25 24 28 28 C 1.40089 * 119.53869 * 359.75078 * 27 26 25 29 29 C 1.53007 * 109.46930 * 60.00356 * 14 13 12 30 30 C 1.53000 * 109.46756 * 204.99436 * 10 9 7 31 31 H 0.96996 * 119.99788 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00518 * 359.72158 * 9 7 2 33 33 H 1.08997 * 109.46788 * 299.99303 * 12 10 9 34 34 H 1.08988 * 109.47617 * 59.99738 * 12 10 9 35 35 H 1.09003 * 109.46885 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47414 * 59.99921 * 13 12 10 37 37 H 0.97008 * 119.99979 * 264.99726 * 16 14 13 38 38 H 1.07991 * 118.98623 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.57364 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.27598 * 359.97271 * 24 23 22 41 41 H 1.08000 * 119.49286 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.45682 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.23211 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.47252 * 180.02562 * 29 14 13 45 45 H 1.09000 * 109.46968 * 59.99897 * 29 14 13 46 46 H 1.08995 * 109.47225 * 300.00405 * 30 10 9 47 47 H 1.09003 * 109.46906 * 60.00406 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 1 2.9687 -3.5500 -0.5921 12 6 2.4220 -4.0369 1.4340 13 6 3.1876 -5.3615 1.4327 14 6 2.3109 -6.4567 0.8220 15 1 1.4002 -6.5639 1.4113 16 7 3.0437 -7.7252 0.8213 17 6 3.0347 -8.5093 1.9175 18 8 2.4190 -8.1636 2.9068 19 6 3.7752 -9.7901 1.9169 20 7 4.3596 -10.2189 0.8114 21 6 5.0330 -11.3531 0.7548 22 6 5.1729 -12.1682 1.8432 23 6 4.5801 -11.7846 3.0582 24 6 4.6787 -12.5672 4.2187 25 6 4.0822 -12.1408 5.3667 26 6 3.3766 -10.9394 5.4057 27 6 3.2620 -10.1546 4.2978 28 6 3.8671 -10.5577 3.1003 29 6 1.9469 -6.0766 -0.6147 30 6 1.1808 -4.7516 -0.6132 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0021 33 1 3.0470 -3.2569 1.8689 34 1 1.5114 -4.1436 2.0234 35 1 3.4472 -5.6321 2.4562 36 1 4.0983 -5.2543 0.8434 37 1 3.5353 -8.0009 0.0318 38 1 5.4866 -11.6464 -0.1803 39 1 5.7287 -13.0913 1.7704 40 1 5.2228 -13.4999 4.2019 41 1 4.1573 -12.7429 6.2602 42 1 2.9138 -10.6251 6.3295 43 1 2.7124 -9.2261 4.3436 44 1 1.3219 -6.8566 -1.0497 45 1 2.8576 -5.9694 -1.2040 46 1 0.2702 -4.8583 -0.0239 47 1 0.9216 -4.4809 -1.6368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034717119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:51 Heat of formation + Delta-G solvation = 23.153368 kcal Electronic energy + Delta-G solvation = -28246.448708 eV Core-core repulsion = 24393.684942 eV Total energy + Delta-G solvation = -3852.763766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45936 -39.72897 -37.94566 -37.71675 -34.91867 -33.39399 -32.96768 -31.52730 -30.78132 -30.37504 -29.91506 -27.45845 -25.30358 -23.90456 -23.67215 -22.96377 -22.32915 -21.23333 -20.64149 -19.54109 -18.45828 -17.79411 -17.46572 -16.95802 -16.34963 -16.03790 -15.47002 -15.34083 -14.95493 -14.77060 -14.29992 -14.09912 -13.92282 -13.73314 -13.60689 -13.51643 -13.25078 -12.98872 -12.53773 -12.48310 -12.18338 -12.00864 -11.84133 -11.77497 -11.36285 -11.03741 -10.79877 -10.73033 -10.63164 -10.53398 -10.27844 -10.16154 -10.07652 -9.73558 -9.69829 -9.52892 -9.49497 -9.01561 -8.82374 -8.43709 -6.90806 -5.72588 -3.00821 -0.29429 0.50942 1.38357 2.37852 2.89071 2.96086 3.45948 3.51153 3.52796 3.76261 3.82196 4.17905 4.36574 4.40018 4.51225 4.62402 4.74873 4.82117 4.93141 4.94283 5.06359 5.07618 5.30440 5.34073 5.44175 5.55015 5.63673 5.66123 5.69421 5.73343 5.76889 5.87330 5.90918 5.99265 6.05159 6.13431 6.19924 6.28164 6.32739 6.34349 6.49104 6.53711 6.60970 6.67884 6.75568 7.02510 7.18617 7.24171 7.53100 7.74079 8.06390 8.46416 9.57282 10.16206 10.50765 11.50208 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.002025 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.283321 B =13824.614309 C =14341.688368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.176 3.824 11 H 0.046 0.954 12 C -0.131 4.131 13 C -0.124 4.124 14 C 0.143 3.857 15 H 0.091 0.909 16 N -0.699 5.699 17 C 0.572 3.428 18 O -0.527 6.527 19 C 0.126 3.874 20 N -0.457 5.457 21 C 0.073 3.927 22 C -0.132 4.132 23 C -0.031 4.031 24 C -0.121 4.121 25 C -0.092 4.092 26 C -0.123 4.123 27 C -0.090 4.090 28 C -0.072 4.072 29 C -0.119 4.119 30 C -0.120 4.120 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.409 0.591 38 H 0.161 0.839 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.175 0.825 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 -29.922 5.426 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.172 4.172 13 C -0.163 4.163 14 C 0.039 3.961 15 H 0.109 0.891 16 N -0.348 5.348 17 C 0.356 3.644 18 O -0.404 6.404 19 C -0.026 4.026 20 N -0.169 5.169 21 C -0.073 4.073 22 C -0.152 4.152 23 C -0.036 4.036 24 C -0.139 4.139 25 C -0.112 4.112 26 C -0.141 4.141 27 C -0.109 4.109 28 C -0.075 4.075 29 C -0.157 4.157 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.245 0.755 38 H 0.178 0.822 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.191 0.809 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.838 -29.052 5.275 31.123 hybrid contribution 0.640 0.090 0.415 0.768 sum 10.477 -28.962 5.690 31.320 Atomic orbital electron populations 1.69662 1.05073 1.25554 1.57925 1.24741 0.95515 0.97652 1.03245 0.86210 0.78657 0.84005 0.77456 1.21800 1.21838 1.20816 1.19244 0.90964 0.84166 1.42308 0.91236 1.42433 1.05790 0.99798 1.88548 1.20251 0.94324 0.85976 0.92796 0.93554 1.22221 0.99756 0.94421 1.00845 1.21908 0.98632 0.95321 1.00459 1.21232 0.95487 0.81458 0.97889 0.89136 1.46047 1.51746 1.21066 1.15957 1.17728 0.80433 0.82552 0.83658 1.90603 1.43926 1.73149 1.32720 1.21447 0.96596 0.95209 0.89306 1.67263 1.06682 1.15350 1.27607 1.22187 0.96381 0.89794 0.98945 1.22152 0.99306 1.01033 0.92736 1.18211 0.96768 0.93889 0.94769 1.20927 1.01212 0.99834 0.91964 1.21105 0.95776 0.96190 0.98101 1.21159 0.99115 0.94635 0.99188 1.22231 0.96365 1.01636 0.90642 1.18709 0.99229 0.94599 0.94955 1.21763 1.00985 0.98317 0.94683 1.21761 0.98904 0.93388 1.01824 0.93582 0.78307 0.91773 0.92432 0.92294 0.92193 0.75519 0.82196 0.83995 0.84998 0.85478 0.85266 0.80855 0.91750 0.91411 0.91928 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.56 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.17 5.12 -53.42 -0.27 -18.44 16 10 C 0.18 3.45 2.77 -67.92 -0.19 3.26 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.39 5.50 -26.73 -0.15 -2.54 16 13 C -0.12 -1.86 5.49 -26.73 -0.15 -2.00 16 14 C 0.14 1.92 2.45 -67.93 -0.17 1.76 16 15 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 16 N -0.70 -8.46 5.07 -54.71 -0.28 -8.74 16 17 C 0.57 7.67 7.74 -12.28 -0.10 7.57 16 18 O -0.53 -8.17 13.10 5.33 0.07 -8.10 16 19 C 0.13 1.53 6.81 -82.55 -0.56 0.96 16 20 N -0.46 -4.86 9.52 -9.81 -0.09 -4.96 16 21 C 0.07 0.58 11.06 -18.03 -0.20 0.38 16 22 C -0.13 -0.96 9.88 -39.28 -0.39 -1.34 16 23 C -0.03 -0.29 5.75 -106.82 -0.61 -0.90 16 24 C -0.12 -0.88 9.82 -39.53 -0.39 -1.27 16 25 C -0.09 -0.66 9.95 -39.88 -0.40 -1.05 16 26 C -0.12 -1.06 9.95 -39.87 -0.40 -1.46 16 27 C -0.09 -1.01 9.23 -39.60 -0.37 -1.37 16 28 C -0.07 -0.83 5.76 -106.59 -0.61 -1.44 16 29 C -0.12 -1.51 5.39 -26.70 -0.14 -1.65 16 30 C -0.12 -1.92 5.40 -26.71 -0.14 -2.07 16 31 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.09 8.14 -51.94 -0.42 0.67 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.41 4.28 7.97 -40.82 -0.33 3.96 16 38 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.17 2.19 4.96 -52.50 -0.26 1.93 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -32.60 383.08 -11.06 -43.66 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.76 Total: 11.34 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -5.20 Total: -10.42 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.08 Total: -59.82 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.60 -11.06 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034717119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.811 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds