Wall clock time and date at job start Sat Apr 11 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99851 * 2 1 4 4 H 1.48497 * 109.47295 * 270.00182 * 3 2 1 5 5 H 1.48501 * 109.47268 * 30.00398 * 3 2 1 6 6 H 1.48506 * 109.47101 * 149.99923 * 3 2 1 7 7 C 1.38817 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99561 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.46854 * 324.99733 * 10 9 7 12 12 C 1.53003 * 109.46833 * 84.99962 * 10 9 7 13 13 C 1.53000 * 109.46637 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47105 * 299.99438 * 13 12 10 15 15 H 1.09000 * 109.47379 * 300.00504 * 14 13 12 16 16 N 1.46499 * 109.47296 * 180.02562 * 14 13 12 17 17 C 1.34775 * 120.00068 * 85.00309 * 16 14 13 18 18 O 1.21540 * 119.99758 * 359.97438 * 17 16 14 19 19 C 1.47951 * 119.99727 * 180.02562 * 17 16 14 20 20 N 1.32197 * 120.16048 * 354.70877 * 19 17 16 21 21 C 1.32027 * 122.68129 * 179.97438 * 20 19 17 22 22 C 1.36690 * 122.02749 * 0.02562 * 21 20 19 23 23 C 1.40531 * 118.84917 * 0.02562 * 22 21 20 24 24 C 1.40321 * 122.22167 * 179.97438 * 23 22 21 25 25 C 1.36210 * 119.45133 * 179.97438 * 24 23 22 26 26 C 1.39385 * 121.00227 * 359.97438 * 25 24 23 27 27 C 1.36256 * 121.08147 * 359.97438 * 26 25 24 28 28 C 1.40089 * 119.53869 * 359.75078 * 27 26 25 29 29 C 1.53007 * 109.46930 * 60.00356 * 14 13 12 30 30 C 1.53000 * 109.46756 * 204.99436 * 10 9 7 31 31 H 0.96996 * 119.99788 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00518 * 359.72158 * 9 7 2 33 33 H 1.08997 * 109.46788 * 299.99303 * 12 10 9 34 34 H 1.08988 * 109.47617 * 59.99738 * 12 10 9 35 35 H 1.09003 * 109.46885 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47414 * 59.99921 * 13 12 10 37 37 H 0.97008 * 119.99979 * 264.99726 * 16 14 13 38 38 H 1.07991 * 118.98623 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.57364 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.27598 * 359.97271 * 24 23 22 41 41 H 1.08000 * 119.49286 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.45682 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.23211 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.47252 * 180.02562 * 29 14 13 45 45 H 1.09000 * 109.46968 * 59.99897 * 29 14 13 46 46 H 1.08995 * 109.47225 * 300.00405 * 30 10 9 47 47 H 1.09003 * 109.46906 * 60.00406 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 1 2.9687 -3.5500 -0.5921 12 6 2.4220 -4.0369 1.4340 13 6 3.1876 -5.3615 1.4327 14 6 2.3109 -6.4567 0.8220 15 1 1.4002 -6.5639 1.4113 16 7 3.0437 -7.7252 0.8213 17 6 3.0347 -8.5093 1.9175 18 8 2.4190 -8.1636 2.9068 19 6 3.7752 -9.7901 1.9169 20 7 4.3596 -10.2189 0.8114 21 6 5.0330 -11.3531 0.7548 22 6 5.1729 -12.1682 1.8432 23 6 4.5801 -11.7846 3.0582 24 6 4.6787 -12.5672 4.2187 25 6 4.0822 -12.1408 5.3667 26 6 3.3766 -10.9394 5.4057 27 6 3.2620 -10.1546 4.2978 28 6 3.8671 -10.5577 3.1003 29 6 1.9469 -6.0766 -0.6147 30 6 1.1808 -4.7516 -0.6132 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0021 33 1 3.0470 -3.2569 1.8689 34 1 1.5114 -4.1436 2.0234 35 1 3.4472 -5.6321 2.4562 36 1 4.0983 -5.2543 0.8434 37 1 3.5353 -8.0009 0.0318 38 1 5.4866 -11.6464 -0.1803 39 1 5.7287 -13.0913 1.7704 40 1 5.2228 -13.4999 4.2019 41 1 4.1573 -12.7429 6.2602 42 1 2.9138 -10.6251 6.3295 43 1 2.7124 -9.2261 4.3436 44 1 1.3219 -6.8566 -1.0497 45 1 2.8576 -5.9694 -1.2040 46 1 0.2702 -4.8583 -0.0239 47 1 0.9216 -4.4809 -1.6368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034717119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:51 Heat of formation + Delta-G solvation = 2.836955 kcal Electronic energy + Delta-G solvation = -28247.329694 eV Core-core repulsion = 24393.684942 eV Total energy + Delta-G solvation = -3853.644752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.19132 -40.74685 -39.23286 -38.37008 -36.42894 -34.70618 -33.97955 -32.48186 -32.16212 -31.70310 -30.73219 -28.95493 -26.28208 -25.35968 -24.51105 -23.88853 -23.61234 -22.43890 -21.71926 -20.94444 -19.39496 -18.96557 -18.46568 -18.13697 -17.31232 -16.89432 -16.75272 -16.41776 -16.13325 -15.63728 -15.48007 -15.37959 -15.08980 -15.02983 -14.68396 -14.49942 -14.43509 -13.99141 -13.87002 -13.47090 -13.16121 -13.14797 -13.09279 -12.83637 -12.75087 -12.55796 -12.33056 -12.30831 -12.15211 -12.04321 -11.64475 -11.47264 -11.21428 -11.19929 -11.07641 -10.84754 -10.48679 -10.15971 -10.10683 -9.07136 -8.98668 -7.92738 -5.20732 -0.98605 -0.12775 0.69018 1.46806 1.48542 1.56754 1.61015 1.94224 2.20279 2.57029 3.05205 3.08347 3.39840 3.59380 3.66940 3.74361 3.81122 3.83812 3.89149 3.90855 4.19241 4.27600 4.28352 4.36085 4.38855 4.40877 4.45715 4.54488 4.58559 4.64318 4.73780 4.80890 4.87790 4.98283 5.05233 5.09834 5.11292 5.14977 5.24475 5.27142 5.39847 5.41537 5.50113 5.54933 5.55773 5.63692 5.64426 5.89828 6.30044 6.36126 6.75910 7.10985 7.35455 8.13077 8.35806 9.30924 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.002025 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.283321 B =13824.614309 C =14341.688368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.047 0.953 12 C -0.121 4.121 13 C -0.112 4.112 14 C 0.151 3.849 15 H 0.072 0.928 16 N -0.690 5.690 17 C 0.568 3.432 18 O -0.558 6.558 19 C 0.090 3.910 20 N -0.461 5.461 21 C 0.055 3.945 22 C -0.107 4.107 23 C -0.054 4.054 24 C -0.109 4.109 25 C -0.101 4.101 26 C -0.116 4.116 27 C -0.130 4.130 28 C -0.088 4.088 29 C -0.106 4.106 30 C -0.112 4.112 31 H 0.250 0.750 32 H 0.372 0.628 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.419 0.581 38 H 0.194 0.806 39 H 0.185 0.815 40 H 0.170 0.830 41 H 0.160 0.840 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.814 -33.466 4.943 36.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.065 0.935 12 C -0.162 4.162 13 C -0.151 4.151 14 C 0.047 3.953 15 H 0.090 0.910 16 N -0.340 5.340 17 C 0.354 3.646 18 O -0.437 6.437 19 C -0.060 4.060 20 N -0.173 5.173 21 C -0.092 4.092 22 C -0.127 4.127 23 C -0.059 4.059 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.134 4.134 27 C -0.149 4.149 28 C -0.091 4.091 29 C -0.144 4.144 30 C -0.151 4.151 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.257 0.743 38 H 0.211 0.789 39 H 0.202 0.798 40 H 0.187 0.813 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.519 -32.634 4.781 35.279 hybrid contribution -0.100 1.000 0.627 1.185 sum 12.419 -31.634 5.409 34.412 Atomic orbital electron populations 1.69821 1.06560 1.25890 1.59911 1.25557 0.96398 1.01054 1.04188 0.85169 0.77643 0.79709 0.77444 1.21285 1.22395 1.19614 1.19619 0.91365 0.85309 1.40411 0.90754 1.42666 1.05457 1.01086 1.88572 1.20494 0.94529 0.85045 0.93574 0.93488 1.22012 0.99066 0.95624 0.99479 1.21763 0.98885 0.93957 1.00507 1.20980 0.94551 0.81693 0.98108 0.90962 1.45857 1.51628 1.20255 1.16219 1.18096 0.80072 0.83235 0.83229 1.90600 1.45256 1.74080 1.33808 1.21146 0.99022 0.95314 0.90504 1.67207 1.06494 1.16553 1.27036 1.22815 0.96375 0.89180 1.00799 1.22645 0.97122 1.01678 0.91217 1.18596 0.97185 0.93454 0.96650 1.21402 0.99989 1.00393 0.90879 1.21466 0.95206 0.95668 0.99615 1.21438 0.98293 0.94877 0.98755 1.22064 0.98655 1.01978 0.92208 1.18897 0.99792 0.95747 0.94633 1.21660 1.01715 0.96799 0.94236 1.21638 0.98381 0.93875 1.01158 0.94150 0.79671 0.93981 0.93913 0.93153 0.90853 0.74327 0.78923 0.79765 0.81264 0.82221 0.83964 0.83500 0.89447 0.89595 0.92607 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.24 -13.29 9.93 84.03 0.83 -12.45 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -38.00 5.12 -322.92 -1.65 -39.66 16 10 C 0.17 6.81 2.77 44.99 0.12 6.94 16 11 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 12 C -0.12 -4.56 5.50 30.60 0.17 -4.39 16 13 C -0.11 -3.40 5.49 30.59 0.17 -3.23 16 14 C 0.15 4.08 2.45 44.99 0.11 4.19 16 15 H 0.07 2.26 7.58 -2.39 -0.02 2.24 16 16 N -0.69 -16.69 5.07 -445.30 -2.26 -18.94 16 17 C 0.57 15.94 7.74 86.82 0.67 16.61 16 18 O -0.56 -18.77 13.10 -3.84 -0.05 -18.82 16 19 C 0.09 2.22 6.81 42.43 0.29 2.51 16 20 N -0.46 -9.26 9.52 -184.95 -1.76 -11.02 16 21 C 0.05 0.72 11.06 84.30 0.93 1.65 16 22 C -0.11 -1.14 9.88 22.47 0.22 -0.91 16 23 C -0.05 -0.86 5.75 -21.29 -0.12 -0.98 16 24 C -0.11 -1.18 9.82 22.30 0.22 -0.96 16 25 C -0.10 -1.15 9.95 22.07 0.22 -0.94 16 26 C -0.12 -1.95 9.95 22.08 0.22 -1.73 16 27 C -0.13 -3.09 9.23 22.26 0.21 -2.88 16 28 C -0.09 -2.03 5.76 -21.14 -0.12 -2.15 16 29 C -0.11 -2.54 5.39 30.61 0.17 -2.37 16 30 C -0.11 -3.57 5.40 30.61 0.17 -3.40 16 31 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.37 20.58 7.80 -92.71 -0.72 19.85 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.42 8.35 7.97 -92.70 -0.74 7.62 16 38 H 0.19 1.10 8.06 -2.92 -0.02 1.08 16 39 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 41 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.15 4.21 4.96 -3.02 -0.01 4.20 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 47 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.74 383.08 1.07 -73.68 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.46 Total: 34.72 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.94 Total: -8.74 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -5.39 Total: -129.99 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -74.74 1.07 -73.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034717119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.513 kcal (2) G-P(sol) polarization free energy of solvation -74.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds