Wall clock time and date at job start Sat Apr 11 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99741 * 2 1 4 4 H 1.48510 * 109.47284 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47272 * 120.00209 * 3 2 1 6 6 H 1.48502 * 109.47037 * 240.00526 * 3 2 1 7 7 C 1.38803 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00281 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46776 * 324.99811 * 10 9 7 12 12 C 1.52997 * 109.47251 * 84.99670 * 10 9 7 13 13 C 1.52995 * 109.46939 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47184 * 299.99597 * 13 12 10 15 15 H 1.09003 * 109.47352 * 300.00382 * 14 13 12 16 16 N 1.46504 * 109.47383 * 180.02562 * 14 13 12 17 17 C 1.34773 * 120.00099 * 84.99815 * 16 14 13 18 18 O 1.21602 * 120.00000 * 0.02562 * 17 16 14 19 19 C 1.47453 * 119.99697 * 180.02562 * 17 16 14 20 20 C 1.38860 * 120.46252 * 354.16372 * 19 17 16 21 21 C 1.38901 * 120.67648 * 179.76369 * 20 19 17 22 22 C 1.36378 * 121.26880 * 0.52400 * 21 20 19 23 23 C 1.40395 * 119.98638 * 359.73805 * 22 21 20 24 24 C 1.40468 * 121.94514 * 180.02562 * 23 22 21 25 25 N 1.31278 * 119.87666 * 180.02562 * 24 23 22 26 26 C 1.32551 * 122.73477 * 359.97438 * 25 24 23 27 27 C 1.36333 * 121.82192 * 359.97438 * 26 25 24 28 28 C 1.40292 * 118.69818 * 0.02562 * 27 26 25 29 29 C 1.52997 * 109.46854 * 60.00350 * 14 13 12 30 30 C 1.52997 * 109.46895 * 205.00009 * 10 9 7 31 31 H 0.97005 * 119.99661 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00245 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.46958 * 299.99722 * 12 10 9 34 34 H 1.08998 * 109.47152 * 59.99874 * 12 10 9 35 35 H 1.09000 * 109.47186 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47657 * 59.99748 * 13 12 10 37 37 H 0.97001 * 119.99344 * 265.00222 * 16 14 13 38 38 H 1.08002 * 119.66235 * 0.02929 * 20 19 17 39 39 H 1.08003 * 119.36573 * 180.24339 * 21 20 19 40 40 H 1.08004 * 120.00116 * 179.76908 * 22 21 20 41 41 H 1.07993 * 120.06515 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.08953 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.64752 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.47404 * 180.02562 * 29 14 13 45 45 H 1.08991 * 109.47461 * 60.00106 * 29 14 13 46 46 H 1.09002 * 109.46969 * 299.98786 * 30 10 9 47 47 H 1.08996 * 109.47773 * 60.00109 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1038 1.6965 -1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9693 -3.5502 -0.5903 12 6 2.4210 -4.0362 1.4355 13 6 3.1866 -5.3608 1.4353 14 6 2.3103 -6.4562 0.8245 15 1 1.3991 -6.5632 1.4131 16 7 3.0431 -7.7248 0.8249 17 6 3.0334 -8.5083 1.9214 18 8 2.4160 -8.1625 2.9103 19 6 3.7714 -9.7849 1.9219 20 6 4.3788 -10.2473 0.7620 21 6 5.0793 -11.4468 0.7587 22 6 5.1832 -12.2090 1.8848 23 6 4.5802 -11.7826 3.0788 24 6 4.6617 -12.5346 4.2624 25 7 4.0818 -12.0976 5.3561 26 6 3.4081 -10.9570 5.4035 27 6 3.2729 -10.1560 4.3086 28 6 3.8660 -10.5578 3.1024 29 6 1.9475 -6.0768 -0.6126 30 6 1.1814 -4.7518 -0.6124 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 3.0457 -3.2560 1.8705 34 1 1.5099 -4.1427 2.0242 35 1 3.4447 -5.6314 2.4592 36 1 4.0977 -5.2539 0.8467 37 1 3.5353 -8.0007 0.0359 38 1 4.3095 -9.6664 -0.1458 39 1 5.5468 -11.7845 -0.1545 40 1 5.7298 -13.1401 1.8581 41 1 5.2003 -13.4706 4.2727 42 1 2.9536 -10.6540 6.3352 43 1 2.7200 -9.2302 4.3687 44 1 1.3228 -6.8569 -1.0478 45 1 2.8585 -5.9699 -1.2013 46 1 0.2704 -4.8584 -0.0235 47 1 0.9230 -4.4815 -1.6362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034792197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:06 Heat of formation + Delta-G solvation = 22.675943 kcal Electronic energy + Delta-G solvation = -28284.713263 eV Core-core repulsion = 24431.928795 eV Total energy + Delta-G solvation = -3852.784469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.43986 -39.93812 -38.18118 -37.49058 -35.17555 -33.50017 -33.18930 -31.64892 -30.76299 -30.52047 -29.87947 -27.21814 -25.02096 -24.03136 -23.74385 -23.20567 -22.44350 -21.30490 -20.77201 -19.64198 -18.43442 -18.20472 -17.24075 -16.96117 -16.57817 -16.15383 -15.57758 -15.41531 -15.22590 -14.78702 -14.40462 -14.18322 -13.96342 -13.89381 -13.64664 -13.61470 -13.51130 -13.00875 -12.66632 -12.46561 -12.45461 -12.18903 -12.03928 -11.90808 -11.35739 -11.19402 -10.86477 -10.75168 -10.53243 -10.48760 -10.22824 -10.15166 -9.99643 -9.94870 -9.57185 -9.54004 -9.20466 -9.09705 -8.87309 -8.47778 -7.02495 -6.09057 -3.08778 -0.29751 0.46406 1.30940 2.31698 2.83617 2.98065 3.51646 3.55300 3.72728 3.74176 4.08519 4.12093 4.16832 4.28234 4.47155 4.52055 4.64830 4.67405 4.76687 4.92624 4.98020 5.12649 5.13867 5.26494 5.44948 5.47421 5.49150 5.54656 5.56943 5.59737 5.64217 5.75132 5.75387 5.76266 5.91617 5.96149 6.10601 6.12133 6.17506 6.24307 6.34708 6.39222 6.45656 6.51611 6.61926 6.89070 7.04933 7.25438 7.64097 7.81724 7.97286 8.76769 9.24290 10.10621 10.25724 11.39387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.002023 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.458743 B =13837.743094 C =14358.995820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.047 4.047 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.182 3.818 11 H 0.047 0.953 12 C -0.131 4.131 13 C -0.123 4.123 14 C 0.145 3.855 15 H 0.090 0.910 16 N -0.717 5.717 17 C 0.560 3.440 18 O -0.529 6.529 19 C -0.126 4.126 20 C -0.057 4.057 21 C -0.132 4.132 22 C -0.059 4.059 23 C -0.121 4.121 24 C 0.139 3.861 25 N -0.487 5.487 26 C 0.073 3.927 27 C -0.153 4.153 28 C 0.011 3.989 29 C -0.119 4.119 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.366 0.634 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.397 0.603 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.177 0.823 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 -28.579 0.987 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.244 4.244 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.379 5.379 10 C 0.072 3.928 11 H 0.065 0.935 12 C -0.172 4.172 13 C -0.163 4.163 14 C 0.042 3.958 15 H 0.108 0.892 16 N -0.367 5.367 17 C 0.348 3.652 18 O -0.407 6.407 19 C -0.129 4.129 20 C -0.077 4.077 21 C -0.150 4.150 22 C -0.079 4.079 23 C -0.123 4.123 24 C -0.032 4.032 25 N -0.194 5.194 26 C -0.069 4.069 27 C -0.172 4.172 28 C 0.005 3.995 29 C -0.157 4.157 30 C -0.160 4.160 31 H 0.066 0.934 32 H 0.199 0.801 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.173 0.827 43 H 0.194 0.806 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.725 -26.972 2.518 29.135 hybrid contribution 0.217 -1.372 -1.163 1.812 sum 10.942 -28.344 1.355 30.413 Atomic orbital electron populations 1.70881 1.06028 1.28412 1.53673 1.25755 0.97083 1.00986 1.00597 0.83255 0.74224 0.75712 0.75819 1.21054 1.22306 1.22314 1.20025 0.91932 0.85810 1.48222 0.91844 1.42439 1.04790 1.00792 1.89847 1.20177 0.94227 0.85476 0.92872 0.93483 1.22201 0.99757 0.94555 1.00706 1.21897 0.98572 0.95247 1.00555 1.21172 0.95512 0.81472 0.97666 0.89180 1.46094 1.52922 1.21859 1.15818 1.18016 0.80566 0.83320 0.83346 1.90620 1.43838 1.73686 1.32597 1.19915 1.02577 0.96218 0.94215 1.21516 0.93563 0.95671 0.96985 1.20848 1.00135 0.94855 0.99127 1.21203 0.96064 0.99228 0.91380 1.19036 1.00933 0.95977 0.96371 1.23193 0.94984 0.98295 0.86777 1.67412 1.07894 1.15063 1.29057 1.22395 0.95724 0.89887 0.98926 1.22983 0.99217 1.03113 0.91867 1.17936 0.95217 0.92796 0.93521 1.21755 1.00904 0.98268 0.94799 1.21776 0.98931 0.93582 1.01737 0.93395 0.80059 0.91700 0.92595 0.92212 0.92223 0.76801 0.84971 0.84713 0.84435 0.81895 0.82720 0.80630 0.91746 0.91460 0.92035 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.31 13.70 55.49 0.76 -28.55 16 2 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 3 Si 1.08 26.02 29.92 -169.99 -5.09 20.94 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -9.21 9.93 -15.06 -0.15 -9.36 16 8 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 9 N -0.74 -18.27 5.12 -53.43 -0.27 -18.55 16 10 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.37 5.50 -26.74 -0.15 -2.52 16 13 C -0.12 -1.79 5.49 -26.73 -0.15 -1.93 16 14 C 0.15 1.82 2.45 -67.93 -0.17 1.66 16 15 H 0.09 1.31 7.57 -51.93 -0.39 0.92 16 16 N -0.72 -7.33 5.03 -54.87 -0.28 -7.60 16 17 C 0.56 6.78 7.70 -12.51 -0.10 6.68 16 18 O -0.53 -8.11 13.16 5.28 0.07 -8.04 16 19 C -0.13 -1.28 5.90 -104.70 -0.62 -1.90 16 20 C -0.06 -0.39 9.51 -39.11 -0.37 -0.76 16 21 C -0.13 -0.71 9.92 -40.01 -0.40 -1.11 16 22 C -0.06 -0.34 9.78 -39.44 -0.39 -0.73 16 23 C -0.12 -1.06 5.74 -106.89 -0.61 -1.68 16 24 C 0.14 1.18 11.05 -16.95 -0.19 0.99 16 25 N -0.49 -5.24 10.30 -13.11 -0.14 -5.38 16 26 C 0.07 0.79 11.07 -17.93 -0.20 0.59 16 27 C -0.15 -1.80 9.28 -39.50 -0.37 -2.17 16 28 C 0.01 0.12 5.77 -106.55 -0.61 -0.49 16 29 C -0.12 -1.39 5.39 -26.71 -0.14 -1.53 16 30 C -0.12 -1.88 5.40 -26.71 -0.14 -2.02 16 31 H 0.25 7.78 6.77 -40.82 -0.28 7.50 16 32 H 0.37 9.40 6.63 -40.82 -0.27 9.13 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 2.82 6.68 -40.82 -0.27 2.54 16 38 H 0.13 0.55 6.43 -52.49 -0.34 0.21 16 39 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 40 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 41 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.16 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.18 2.31 5.06 -52.49 -0.27 2.04 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -35.01 379.11 -10.77 -45.79 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.52 Total: 10.06 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -5.03 Total: -14.38 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.08 Total: -60.08 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.07 Total: -8.04 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.09 Total: 20.94 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.01 -10.77 -45.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034792197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.465 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds