Wall clock time and date at job start Sat Apr 11 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99741 * 2 1 4 4 H 1.48510 * 109.47284 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47272 * 120.00209 * 3 2 1 6 6 H 1.48502 * 109.47037 * 240.00526 * 3 2 1 7 7 C 1.38803 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00281 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46776 * 324.99811 * 10 9 7 12 12 C 1.52997 * 109.47251 * 84.99670 * 10 9 7 13 13 C 1.52995 * 109.46939 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47184 * 299.99597 * 13 12 10 15 15 H 1.09003 * 109.47352 * 300.00382 * 14 13 12 16 16 N 1.46504 * 109.47383 * 180.02562 * 14 13 12 17 17 C 1.34773 * 120.00099 * 84.99815 * 16 14 13 18 18 O 1.21602 * 120.00000 * 0.02562 * 17 16 14 19 19 C 1.47453 * 119.99697 * 180.02562 * 17 16 14 20 20 C 1.38860 * 120.46252 * 354.16372 * 19 17 16 21 21 C 1.38901 * 120.67648 * 179.76369 * 20 19 17 22 22 C 1.36378 * 121.26880 * 0.52400 * 21 20 19 23 23 C 1.40395 * 119.98638 * 359.73805 * 22 21 20 24 24 C 1.40468 * 121.94514 * 180.02562 * 23 22 21 25 25 N 1.31278 * 119.87666 * 180.02562 * 24 23 22 26 26 C 1.32551 * 122.73477 * 359.97438 * 25 24 23 27 27 C 1.36333 * 121.82192 * 359.97438 * 26 25 24 28 28 C 1.40292 * 118.69818 * 0.02562 * 27 26 25 29 29 C 1.52997 * 109.46854 * 60.00350 * 14 13 12 30 30 C 1.52997 * 109.46895 * 205.00009 * 10 9 7 31 31 H 0.97005 * 119.99661 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00245 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.46958 * 299.99722 * 12 10 9 34 34 H 1.08998 * 109.47152 * 59.99874 * 12 10 9 35 35 H 1.09000 * 109.47186 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47657 * 59.99748 * 13 12 10 37 37 H 0.97001 * 119.99344 * 265.00222 * 16 14 13 38 38 H 1.08002 * 119.66235 * 0.02929 * 20 19 17 39 39 H 1.08003 * 119.36573 * 180.24339 * 21 20 19 40 40 H 1.08004 * 120.00116 * 179.76908 * 22 21 20 41 41 H 1.07993 * 120.06515 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.08953 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.64752 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.47404 * 180.02562 * 29 14 13 45 45 H 1.08991 * 109.47461 * 60.00106 * 29 14 13 46 46 H 1.09002 * 109.46969 * 299.98786 * 30 10 9 47 47 H 1.08996 * 109.47773 * 60.00109 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1038 1.6965 -1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9693 -3.5502 -0.5903 12 6 2.4210 -4.0362 1.4355 13 6 3.1866 -5.3608 1.4353 14 6 2.3103 -6.4562 0.8245 15 1 1.3991 -6.5632 1.4131 16 7 3.0431 -7.7248 0.8249 17 6 3.0334 -8.5083 1.9214 18 8 2.4160 -8.1625 2.9103 19 6 3.7714 -9.7849 1.9219 20 6 4.3788 -10.2473 0.7620 21 6 5.0793 -11.4468 0.7587 22 6 5.1832 -12.2090 1.8848 23 6 4.5802 -11.7826 3.0788 24 6 4.6617 -12.5346 4.2624 25 7 4.0818 -12.0976 5.3561 26 6 3.4081 -10.9570 5.4035 27 6 3.2729 -10.1560 4.3086 28 6 3.8660 -10.5578 3.1024 29 6 1.9475 -6.0768 -0.6126 30 6 1.1814 -4.7518 -0.6124 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 3.0457 -3.2560 1.8705 34 1 1.5099 -4.1427 2.0242 35 1 3.4447 -5.6314 2.4592 36 1 4.0977 -5.2539 0.8467 37 1 3.5353 -8.0007 0.0359 38 1 4.3095 -9.6664 -0.1458 39 1 5.5468 -11.7845 -0.1545 40 1 5.7298 -13.1401 1.8581 41 1 5.2003 -13.4706 4.2727 42 1 2.9536 -10.6540 6.3352 43 1 2.7200 -9.2302 4.3687 44 1 1.3228 -6.8569 -1.0478 45 1 2.8585 -5.9699 -1.2013 46 1 0.2704 -4.8584 -0.0235 47 1 0.9230 -4.4815 -1.6362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034792197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:04 Heat of formation + Delta-G solvation = -0.334351 kcal Electronic energy + Delta-G solvation = -28285.711064 eV Core-core repulsion = 24431.928795 eV Total energy + Delta-G solvation = -3853.782270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13719 -40.87523 -39.39886 -38.15254 -36.68774 -34.97245 -33.91304 -32.67433 -31.95005 -31.79368 -30.78623 -28.69247 -25.85751 -25.43132 -24.53520 -24.32430 -23.70039 -22.54119 -21.70297 -20.96655 -19.41638 -19.06048 -18.86489 -17.71027 -17.33108 -17.12585 -16.88277 -16.27352 -16.15330 -15.94683 -15.60533 -15.37799 -15.24467 -15.15287 -14.80675 -14.80048 -14.41309 -14.02616 -13.61828 -13.52741 -13.18987 -13.06647 -13.05553 -12.93693 -12.74522 -12.68690 -12.37538 -12.24907 -12.12137 -11.87507 -11.55605 -11.50988 -11.20390 -11.14355 -10.99015 -10.85895 -10.34027 -10.23041 -10.11945 -9.13247 -9.11792 -8.38849 -5.32306 -0.90370 -0.15024 0.59633 1.56740 1.66985 1.68442 1.83085 1.97024 2.21739 2.71027 3.07162 3.39353 3.45017 3.48006 3.60784 3.67674 3.69561 3.76549 3.78031 3.89176 3.92613 4.16378 4.19287 4.26928 4.27691 4.37981 4.40382 4.49220 4.52927 4.58396 4.69924 4.73627 4.83510 4.87706 4.92342 5.02041 5.04577 5.08804 5.14623 5.17099 5.24891 5.34657 5.40393 5.43852 5.52195 5.61094 5.66277 5.77042 6.45742 6.49769 6.93981 7.10641 7.14754 8.01176 8.12642 9.13156 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.002023 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.458743 B =13837.743094 C =14358.995820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.109 4.109 3 Si 1.126 2.874 4 H -0.294 1.294 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.326 4.326 8 H 0.066 0.934 9 N -0.752 5.752 10 C 0.177 3.823 11 H 0.047 0.953 12 C -0.122 4.122 13 C -0.111 4.111 14 C 0.154 3.846 15 H 0.065 0.935 16 N -0.701 5.701 17 C 0.556 3.444 18 O -0.574 6.574 19 C -0.164 4.164 20 C -0.035 4.035 21 C -0.132 4.132 22 C -0.042 4.042 23 C -0.137 4.137 24 C 0.149 3.851 25 N -0.516 5.516 26 C 0.066 3.934 27 C -0.184 4.184 28 C -0.008 4.008 29 C -0.105 4.105 30 C -0.114 4.114 31 H 0.243 0.757 32 H 0.358 0.642 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.416 0.584 38 H 0.163 0.837 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.204 0.796 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.052 0.948 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.281 -31.792 -1.776 34.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.951 3.049 4 H -0.220 1.220 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.457 4.457 8 H 0.084 0.916 9 N -0.393 5.393 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.163 4.163 13 C -0.151 4.151 14 C 0.049 3.951 15 H 0.084 0.916 16 N -0.353 5.353 17 C 0.345 3.655 18 O -0.455 6.455 19 C -0.167 4.167 20 C -0.055 4.055 21 C -0.149 4.149 22 C -0.062 4.062 23 C -0.139 4.139 24 C -0.022 4.022 25 N -0.225 5.225 26 C -0.076 4.076 27 C -0.203 4.203 28 C -0.014 4.014 29 C -0.143 4.143 30 C -0.153 4.153 31 H 0.054 0.946 32 H 0.190 0.810 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.255 0.745 38 H 0.180 0.820 39 H 0.194 0.806 40 H 0.197 0.803 41 H 0.220 0.780 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.899 -30.249 -0.274 33.291 hybrid contribution -0.663 -0.530 -0.334 0.912 sum 13.236 -30.779 -0.608 33.510 Atomic orbital electron populations 1.70992 1.07178 1.27816 1.56594 1.27188 0.97172 1.04717 1.00948 0.82644 0.73387 0.71709 0.77130 1.22013 1.20739 1.20031 1.20362 0.92234 0.87068 1.46042 0.91631 1.42702 1.04642 1.02020 1.89933 1.20438 0.94492 0.84651 0.93506 0.93495 1.22002 0.98897 0.95947 0.99410 1.21755 0.99022 0.93785 1.00504 1.20857 0.94348 0.81930 0.97919 0.91647 1.45800 1.52645 1.20549 1.16262 1.18476 0.80046 0.84109 0.82862 1.90618 1.45768 1.74829 1.34296 1.19774 1.05387 0.95933 0.95598 1.21969 0.90981 0.96049 0.96458 1.21353 0.99245 0.93776 1.00535 1.21720 0.94238 1.00325 0.89890 1.19322 1.01397 0.95248 0.97962 1.23921 0.93315 0.99013 0.86000 1.67470 1.09373 1.15145 1.30471 1.22489 0.95909 0.90192 0.98980 1.22813 1.01110 1.02981 0.93439 1.18204 0.95669 0.94148 0.93404 1.21661 1.01903 0.96508 0.94210 1.21661 0.98351 0.94273 1.00999 0.94644 0.81049 0.94411 0.94428 0.93514 0.90433 0.74509 0.81971 0.80635 0.80321 0.77952 0.82241 0.83115 0.88944 0.89058 0.92928 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.35 13.70 21.65 0.30 -62.05 16 2 C -0.11 -6.46 5.50 84.86 0.47 -6.00 16 3 Si 1.13 52.77 29.92 68.60 2.05 54.82 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -18.50 9.93 84.03 0.83 -17.66 16 8 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.75 -38.30 5.12 -322.94 -1.65 -39.96 16 10 C 0.18 6.89 2.77 44.99 0.12 7.02 16 11 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 12 C -0.12 -4.56 5.50 30.59 0.17 -4.39 16 13 C -0.11 -3.22 5.49 30.59 0.17 -3.05 16 14 C 0.15 3.74 2.45 44.99 0.11 3.85 16 15 H 0.07 1.96 7.57 -2.39 -0.02 1.94 16 16 N -0.70 -13.11 5.03 -445.77 -2.24 -15.35 16 17 C 0.56 13.53 7.70 86.67 0.67 14.20 16 18 O -0.57 -19.02 13.16 -4.04 -0.05 -19.07 16 19 C -0.16 -3.15 5.90 -19.92 -0.12 -3.26 16 20 C -0.03 -0.33 9.51 22.58 0.21 -0.12 16 21 C -0.13 -0.68 9.92 21.99 0.22 -0.46 16 22 C -0.04 -0.28 9.78 22.36 0.22 -0.06 16 23 C -0.14 -2.10 5.74 -21.33 -0.12 -2.22 16 24 C 0.15 2.22 11.05 85.32 0.94 3.17 16 25 N -0.52 -11.13 10.30 -195.40 -2.01 -13.15 16 26 C 0.07 1.56 11.07 84.14 0.93 2.49 16 27 C -0.18 -4.79 9.28 22.33 0.21 -4.59 16 28 C -0.01 -0.19 5.77 -21.12 -0.12 -0.31 16 29 C -0.10 -2.16 5.39 30.61 0.17 -1.99 16 30 C -0.11 -3.44 5.40 30.61 0.17 -3.28 16 31 H 0.24 15.47 6.77 -92.70 -0.63 14.84 16 32 H 0.36 19.17 6.63 -92.71 -0.61 18.55 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.42 4.33 6.68 -92.71 -0.62 3.71 16 38 H 0.16 0.46 6.43 -2.91 -0.02 0.44 16 39 H 0.18 -0.41 8.06 -2.91 -0.02 -0.44 16 40 H 0.18 -0.28 8.06 -2.91 -0.02 -0.31 16 41 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.15 4.61 5.06 -2.91 -0.01 4.60 16 44 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -82.84 379.11 1.55 -81.30 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.08 Total: 30.13 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 5.24 Total: -16.67 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -5.61 Total: -130.51 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 2.05 Total: 54.82 kcal Total: -82.84 1.55 -81.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034792197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.963 kcal (2) G-P(sol) polarization free energy of solvation -82.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds