Wall clock time and date at job start Sat Apr 11 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48503 * 109.47293 * 239.99836 * 3 2 1 5 5 H 1.48497 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46986 * 120.00047 * 3 2 1 7 7 C 1.38813 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99826 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00411 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00117 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47696 * 34.99891 * 10 9 7 12 12 C 1.53002 * 109.47204 * 155.00235 * 10 9 7 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 16 16 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00270 * 154.99797 * 16 14 13 18 18 O 1.21608 * 119.99948 * 0.02562 * 17 16 14 19 19 C 1.47441 * 120.00202 * 180.02562 * 17 16 14 20 20 C 1.38951 * 121.16991 * 359.97438 * 19 17 16 21 21 N 1.32197 * 121.31680 * 180.02562 * 20 19 17 22 22 C 1.31193 * 123.69544 * 0.02562 * 21 20 19 23 23 C 1.40383 * 120.91922 * 0.02562 * 22 21 20 24 24 C 1.40394 * 122.14462 * 179.97438 * 23 22 21 25 25 C 1.36229 * 119.48320 * 179.97438 * 24 23 22 26 26 C 1.39287 * 121.11054 * 0.02562 * 25 24 23 27 27 C 1.36448 * 120.94604 * 0.02562 * 26 25 24 28 28 C 1.39695 * 119.43522 * 359.68677 * 27 26 25 29 29 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 30 30 C 1.52997 * 109.47244 * 274.99987 * 10 9 7 31 31 H 0.96998 * 119.99451 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99530 * 359.97438 * 9 7 2 33 33 H 1.08992 * 109.47063 * 59.99836 * 12 10 9 34 34 H 1.09004 * 109.46733 * 299.99549 * 12 10 9 35 35 H 1.09002 * 109.47398 * 59.99826 * 13 12 10 36 36 H 1.09001 * 109.47194 * 180.02562 * 13 12 10 37 37 H 0.97000 * 119.99491 * 335.00093 * 16 14 13 38 38 H 1.08002 * 119.34320 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.53964 * 179.97438 * 22 21 20 40 40 H 1.07992 * 120.25680 * 359.97438 * 24 23 22 41 41 H 1.08004 * 119.44478 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.53251 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.28136 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.47486 * 180.02562 * 29 14 13 45 45 H 1.09002 * 109.46716 * 60.00091 * 29 14 13 46 46 H 1.09002 * 109.47153 * 300.00242 * 30 10 9 47 47 H 1.09001 * 109.47289 * 60.00326 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 1.1807 -4.7522 0.6090 13 6 1.9459 -6.0771 0.6096 14 6 2.3103 -6.4562 -0.8271 15 1 1.3998 -6.5627 -1.4169 16 7 3.0425 -7.7251 -0.8267 17 6 3.0339 -8.5085 -1.9234 18 8 2.4188 -8.1618 -2.9135 19 6 3.7703 -9.7858 -1.9228 20 6 4.4815 -10.2054 -0.8053 21 7 5.1432 -11.3498 -0.8017 22 6 5.1863 -12.1688 -1.8257 23 6 4.5124 -11.8671 -3.0196 24 6 4.5415 -12.7243 -4.1311 25 6 3.8671 -12.3779 -5.2629 26 6 3.1490 -11.1866 -5.3366 27 6 3.1002 -10.3299 -4.2757 28 6 3.7756 -10.6572 -3.0974 29 6 3.1875 -5.3609 -1.4368 30 6 2.4218 -4.0357 -1.4375 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0002 33 1 0.2701 -4.8584 0.0196 34 1 0.9215 -4.4823 1.6328 35 1 2.8564 -5.9706 1.1993 36 1 1.3208 -6.8576 1.0435 37 1 3.5334 -8.0015 -0.0371 38 1 4.4947 -9.5837 0.0778 39 1 5.7489 -13.0876 -1.7494 40 1 5.0943 -13.6511 -4.0891 41 1 3.8896 -13.0380 -6.1174 42 1 2.6239 -10.9370 -6.2467 43 1 2.5398 -9.4094 -4.3445 44 1 3.4467 -5.6308 -2.4606 45 1 4.0980 -5.2544 -0.8471 46 1 1.5111 -4.1419 -2.0270 47 1 3.0468 -3.2554 -1.8718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034798383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:09 Heat of formation + Delta-G solvation = 20.502625 kcal Electronic energy + Delta-G solvation = -28191.797190 eV Core-core repulsion = 24338.918479 eV Total energy + Delta-G solvation = -3852.878711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25732 -39.77707 -37.94939 -37.73500 -34.95672 -33.38801 -32.86578 -31.55401 -30.88853 -30.41954 -29.85597 -27.39845 -25.26297 -23.89134 -23.68576 -22.94943 -22.38004 -21.20086 -20.75289 -19.53508 -18.39474 -17.85578 -17.75447 -16.98174 -16.41808 -15.95410 -15.36934 -15.28457 -15.15686 -14.74450 -14.36893 -14.16066 -13.98325 -13.77649 -13.60977 -13.55244 -13.16021 -13.01826 -12.56651 -12.55302 -12.29077 -12.04592 -11.83181 -11.81290 -11.40127 -11.07695 -10.80413 -10.77647 -10.67073 -10.43094 -10.29985 -10.19563 -10.11092 -9.78141 -9.67098 -9.53129 -9.48252 -9.08566 -8.84246 -8.49022 -6.93177 -5.74383 -3.02883 -0.32886 0.49429 1.30831 2.47633 2.89141 2.93229 3.45110 3.49584 3.50506 3.71327 3.82395 4.11225 4.26569 4.29724 4.46871 4.59681 4.62580 4.76919 4.84215 4.90452 5.02152 5.07402 5.22133 5.26056 5.37011 5.51771 5.56896 5.58629 5.65117 5.69960 5.73250 5.83350 5.86362 5.97784 6.01043 6.10977 6.14966 6.23025 6.25827 6.29177 6.45706 6.49714 6.56172 6.63357 6.72172 6.99023 7.15323 7.31257 7.45721 7.71540 8.02232 8.44585 9.55344 10.13985 10.48430 11.48292 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.001999 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.777216 B =14004.908715 C =14486.171758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.145 3.855 15 H 0.090 0.910 16 N -0.717 5.717 17 C 0.566 3.434 18 O -0.530 6.530 19 C -0.171 4.171 20 C 0.120 3.880 21 N -0.498 5.498 22 C 0.175 3.825 23 C -0.122 4.122 24 C -0.091 4.091 25 C -0.118 4.118 26 C -0.097 4.097 27 C -0.110 4.110 28 C 0.012 3.988 29 C -0.124 4.124 30 C -0.132 4.132 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.167 0.833 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -29.510 -5.483 31.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.158 4.158 14 C 0.042 3.958 15 H 0.108 0.892 16 N -0.367 5.367 17 C 0.353 3.647 18 O -0.408 6.408 19 C -0.177 4.177 20 C -0.024 4.024 21 N -0.205 5.205 22 C 0.004 3.996 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.128 4.128 28 C 0.006 3.994 29 C -0.163 4.163 30 C -0.173 4.173 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.175 0.825 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.184 0.816 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.390 -29.147 -5.327 31.082 hybrid contribution 0.037 1.006 -0.451 1.103 sum 9.426 -28.141 -5.777 30.235 Atomic orbital electron populations 1.69654 1.05078 1.25702 1.57766 1.24744 0.95518 0.97664 1.03158 0.86283 0.78520 0.83666 0.77812 1.21319 1.21734 1.21316 1.19196 0.90926 0.84168 1.42560 0.91294 1.42419 1.05785 0.99779 1.88573 1.20241 0.94301 0.85988 0.92778 0.93594 1.21751 0.98933 0.93372 1.01848 1.21763 1.00942 0.98399 0.94700 1.21184 0.95475 0.81334 0.97783 0.89157 1.46099 1.53027 1.21904 1.15660 1.17801 0.80492 0.82990 0.83446 1.90658 1.43890 1.73569 1.32688 1.21963 1.03222 0.96722 0.95754 1.22758 0.90935 0.92357 0.96386 1.67111 1.18944 1.04322 1.30104 1.23303 0.92402 0.97158 0.86758 1.19021 1.00748 0.95861 0.96778 1.20959 0.99108 0.98838 0.92140 1.21018 0.97190 0.97118 0.98258 1.21225 0.97656 0.93733 0.99027 1.21849 0.98144 1.01568 0.91202 1.18925 0.94999 0.92154 0.93275 1.21914 0.98589 0.95348 1.00467 1.22235 0.99759 0.94419 1.00855 0.93509 0.78300 0.91924 0.91291 0.91464 0.91783 0.76820 0.82473 0.81647 0.84719 0.85433 0.85246 0.81636 0.92315 0.92237 0.92455 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -18.04 5.12 -53.43 -0.27 -18.32 16 10 C 0.18 3.41 2.77 -67.94 -0.19 3.22 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.12 -1.88 5.39 -26.73 -0.14 -2.03 16 13 C -0.12 -1.43 5.39 -26.73 -0.14 -1.58 16 14 C 0.15 1.87 2.45 -67.93 -0.17 1.70 16 15 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 16 N -0.72 -7.69 5.03 -54.88 -0.28 -7.96 16 17 C 0.57 7.11 7.74 -12.51 -0.10 7.01 16 18 O -0.53 -8.24 13.40 5.27 0.07 -8.17 16 19 C -0.17 -1.89 6.07 -102.67 -0.62 -2.52 16 20 C 0.12 1.12 10.71 -17.13 -0.18 0.93 16 21 N -0.50 -4.73 10.22 -12.58 -0.13 -4.86 16 22 C 0.18 1.36 11.00 -17.02 -0.19 1.17 16 23 C -0.12 -1.07 5.74 -106.89 -0.61 -1.68 16 24 C -0.09 -0.59 9.82 -39.49 -0.39 -0.97 16 25 C -0.12 -0.78 9.94 -39.91 -0.40 -1.18 16 26 C -0.10 -0.81 9.96 -39.84 -0.40 -1.20 16 27 C -0.11 -1.21 9.33 -39.68 -0.37 -1.58 16 28 C 0.01 0.13 5.91 -104.74 -0.62 -0.49 16 29 C -0.12 -1.81 5.50 -26.70 -0.15 -1.95 16 30 C -0.13 -2.37 5.51 -26.70 -0.15 -2.52 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 3.09 6.71 -40.82 -0.27 2.82 16 38 H 0.16 1.04 6.44 -52.49 -0.34 0.70 16 39 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.17 2.10 5.24 -52.49 -0.28 1.83 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -33.59 381.69 -10.85 -44.44 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.64 Total: 10.10 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -5.06 Total: -10.89 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.05 Total: -58.71 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.17 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.59 -10.85 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034798383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.939 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds