Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48503 * 109.47293 * 239.99836 * 3 2 1 5 5 H 1.48497 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46986 * 120.00047 * 3 2 1 7 7 C 1.38813 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99826 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00411 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00117 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47696 * 34.99891 * 10 9 7 12 12 C 1.53002 * 109.47204 * 155.00235 * 10 9 7 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 16 16 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00270 * 154.99797 * 16 14 13 18 18 O 1.21608 * 119.99948 * 0.02562 * 17 16 14 19 19 C 1.47441 * 120.00202 * 180.02562 * 17 16 14 20 20 C 1.38951 * 121.16991 * 359.97438 * 19 17 16 21 21 N 1.32197 * 121.31680 * 180.02562 * 20 19 17 22 22 C 1.31193 * 123.69544 * 0.02562 * 21 20 19 23 23 C 1.40383 * 120.91922 * 0.02562 * 22 21 20 24 24 C 1.40394 * 122.14462 * 179.97438 * 23 22 21 25 25 C 1.36229 * 119.48320 * 179.97438 * 24 23 22 26 26 C 1.39287 * 121.11054 * 0.02562 * 25 24 23 27 27 C 1.36448 * 120.94604 * 0.02562 * 26 25 24 28 28 C 1.39695 * 119.43522 * 359.68677 * 27 26 25 29 29 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 30 30 C 1.52997 * 109.47244 * 274.99987 * 10 9 7 31 31 H 0.96998 * 119.99451 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99530 * 359.97438 * 9 7 2 33 33 H 1.08992 * 109.47063 * 59.99836 * 12 10 9 34 34 H 1.09004 * 109.46733 * 299.99549 * 12 10 9 35 35 H 1.09002 * 109.47398 * 59.99826 * 13 12 10 36 36 H 1.09001 * 109.47194 * 180.02562 * 13 12 10 37 37 H 0.97000 * 119.99491 * 335.00093 * 16 14 13 38 38 H 1.08002 * 119.34320 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.53964 * 179.97438 * 22 21 20 40 40 H 1.07992 * 120.25680 * 359.97438 * 24 23 22 41 41 H 1.08004 * 119.44478 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.53251 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.28136 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.47486 * 180.02562 * 29 14 13 45 45 H 1.09002 * 109.46716 * 60.00091 * 29 14 13 46 46 H 1.09002 * 109.47153 * 300.00242 * 30 10 9 47 47 H 1.09001 * 109.47289 * 60.00326 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 1.1807 -4.7522 0.6090 13 6 1.9459 -6.0771 0.6096 14 6 2.3103 -6.4562 -0.8271 15 1 1.3998 -6.5627 -1.4169 16 7 3.0425 -7.7251 -0.8267 17 6 3.0339 -8.5085 -1.9234 18 8 2.4188 -8.1618 -2.9135 19 6 3.7703 -9.7858 -1.9228 20 6 4.4815 -10.2054 -0.8053 21 7 5.1432 -11.3498 -0.8017 22 6 5.1863 -12.1688 -1.8257 23 6 4.5124 -11.8671 -3.0196 24 6 4.5415 -12.7243 -4.1311 25 6 3.8671 -12.3779 -5.2629 26 6 3.1490 -11.1866 -5.3366 27 6 3.1002 -10.3299 -4.2757 28 6 3.7756 -10.6572 -3.0974 29 6 3.1875 -5.3609 -1.4368 30 6 2.4218 -4.0357 -1.4375 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0002 33 1 0.2701 -4.8584 0.0196 34 1 0.9215 -4.4823 1.6328 35 1 2.8564 -5.9706 1.1993 36 1 1.3208 -6.8576 1.0435 37 1 3.5334 -8.0015 -0.0371 38 1 4.4947 -9.5837 0.0778 39 1 5.7489 -13.0876 -1.7494 40 1 5.0943 -13.6511 -4.0891 41 1 3.8896 -13.0380 -6.1174 42 1 2.6239 -10.9370 -6.2467 43 1 2.5398 -9.4094 -4.3445 44 1 3.4467 -5.6308 -2.4606 45 1 4.0980 -5.2544 -0.8471 46 1 1.5111 -4.1419 -2.0270 47 1 3.0468 -3.2554 -1.8718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034798383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = -0.918397 kcal Electronic energy + Delta-G solvation = -28192.726075 eV Core-core repulsion = 24338.918479 eV Total energy + Delta-G solvation = -3853.807596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.97165 -40.73676 -39.21510 -38.35407 -36.42046 -34.78095 -33.79493 -32.49293 -32.17230 -31.70737 -30.75158 -28.84720 -26.18868 -25.35892 -24.51034 -23.84118 -23.61156 -22.40589 -21.75945 -20.91875 -19.25292 -18.97136 -18.51840 -18.42548 -17.31324 -16.86598 -16.70438 -16.27328 -16.07471 -15.79543 -15.46668 -15.39010 -15.10432 -15.05123 -14.74184 -14.54849 -14.41077 -13.99108 -13.71725 -13.44302 -13.17837 -13.16521 -13.10255 -12.91470 -12.80725 -12.53654 -12.33635 -12.31657 -12.18415 -12.05094 -11.65304 -11.47809 -11.22401 -11.11484 -11.06451 -10.84016 -10.40412 -10.15713 -10.08384 -9.14186 -8.99556 -7.93399 -5.21532 -0.98092 -0.13708 0.65319 1.46139 1.49219 1.55136 1.73328 1.98115 2.18833 2.56515 3.05331 3.22897 3.39054 3.49924 3.61268 3.69611 3.73840 3.81899 3.86756 3.89042 4.00872 4.25737 4.27901 4.31288 4.35636 4.38301 4.48725 4.50288 4.57890 4.61503 4.66044 4.76822 4.83420 4.98072 5.02427 5.06719 5.10966 5.15835 5.23895 5.26391 5.39702 5.41966 5.48779 5.52193 5.54374 5.58170 5.62933 5.89325 6.29278 6.45152 6.81822 7.13838 7.34616 8.12489 8.34769 9.30035 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.001999 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.777216 B =14004.908715 C =14486.171758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.048 0.952 12 C -0.113 4.113 13 C -0.106 4.106 14 C 0.154 3.846 15 H 0.067 0.933 16 N -0.703 5.703 17 C 0.564 3.436 18 O -0.570 6.570 19 C -0.204 4.204 20 C 0.133 3.867 21 N -0.520 5.520 22 C 0.191 3.809 23 C -0.139 4.139 24 C -0.074 4.074 25 C -0.126 4.126 26 C -0.090 4.090 27 C -0.151 4.151 28 C -0.009 4.009 29 C -0.112 4.112 30 C -0.122 4.122 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.181 0.819 39 H 0.208 0.792 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.951 -32.928 -4.777 35.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.152 4.152 13 C -0.144 4.144 14 C 0.050 3.950 15 H 0.086 0.914 16 N -0.354 5.354 17 C 0.352 3.648 18 O -0.451 6.451 19 C -0.209 4.209 20 C -0.011 4.011 21 N -0.227 5.227 22 C 0.021 3.979 23 C -0.141 4.141 24 C -0.093 4.093 25 C -0.143 4.143 26 C -0.110 4.110 27 C -0.169 4.169 28 C -0.015 4.015 29 C -0.151 4.151 30 C -0.163 4.163 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.252 0.748 38 H 0.198 0.802 39 H 0.225 0.775 40 H 0.194 0.806 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.053 -32.616 -4.595 35.074 hybrid contribution -0.718 1.896 -0.765 2.167 sum 11.335 -30.720 -5.360 33.180 Atomic orbital electron populations 1.69817 1.06569 1.25974 1.59818 1.25563 0.96396 1.01082 1.04140 0.85241 0.77196 0.79372 0.78152 1.20724 1.22291 1.20166 1.19587 0.91367 0.85323 1.40582 0.90735 1.42664 1.05447 1.01124 1.88593 1.20494 0.94582 0.85040 0.93493 0.93355 1.21634 0.98363 0.94056 1.01112 1.21666 1.01876 0.96712 0.94180 1.20895 0.94393 0.81718 0.98021 0.91439 1.45841 1.52745 1.20747 1.16058 1.18154 0.79972 0.83600 0.83024 1.90653 1.45658 1.74585 1.34212 1.21831 1.05373 0.96572 0.97108 1.23100 0.89332 0.92438 0.96270 1.67249 1.19855 1.04734 1.30908 1.24014 0.90711 0.97638 0.85570 1.19319 1.01001 0.95508 0.98275 1.21471 0.97735 0.99352 0.90763 1.21386 0.96613 0.96656 0.99679 1.21507 0.97023 0.93915 0.98520 1.21689 1.00327 1.01857 0.92980 1.19194 0.95648 0.93403 0.93210 1.21772 0.98998 0.93919 1.00433 1.22031 0.98957 0.95759 0.99526 0.94145 0.79715 0.92855 0.91302 0.89187 0.89233 0.74759 0.80222 0.77550 0.80560 0.82171 0.84017 0.84594 0.93492 0.90515 0.94230 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.24 -13.30 9.93 84.03 0.83 -12.47 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.76 5.12 -322.95 -1.65 -39.42 16 10 C 0.17 6.70 2.77 44.99 0.12 6.82 16 11 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 12 C -0.11 -3.49 5.39 30.60 0.16 -3.33 16 13 C -0.11 -2.33 5.39 30.59 0.16 -2.16 16 14 C 0.15 3.90 2.45 44.99 0.11 4.01 16 15 H 0.07 2.06 7.58 -2.39 -0.02 2.05 16 16 N -0.70 -14.51 5.03 -445.79 -2.24 -16.76 16 17 C 0.56 14.63 7.74 86.67 0.67 15.30 16 18 O -0.57 -19.18 13.40 -4.06 -0.05 -19.23 16 19 C -0.20 -4.50 6.07 -18.60 -0.11 -4.62 16 20 C 0.13 2.25 10.71 84.81 0.91 3.16 16 21 N -0.52 -8.53 10.22 -193.73 -1.98 -10.51 16 22 C 0.19 2.33 11.00 85.31 0.94 3.26 16 23 C -0.14 -2.11 5.74 -21.33 -0.12 -2.24 16 24 C -0.07 -0.68 9.82 22.33 0.22 -0.46 16 25 C -0.13 -1.31 9.94 22.05 0.22 -1.09 16 26 C -0.09 -1.47 9.96 22.10 0.22 -1.25 16 27 C -0.15 -3.52 9.33 22.20 0.21 -3.31 16 28 C -0.01 -0.21 5.91 -19.94 -0.12 -0.33 16 29 C -0.11 -3.28 5.50 30.61 0.17 -3.12 16 30 C -0.12 -4.54 5.51 30.61 0.17 -4.37 16 31 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.37 20.47 7.80 -92.71 -0.72 19.74 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.41 5.53 6.71 -92.71 -0.62 4.91 16 38 H 0.18 1.93 6.44 -2.91 -0.02 1.91 16 39 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 41 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 3.94 5.24 -2.91 -0.02 3.92 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 47 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -77.52 381.69 1.27 -76.25 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.34 Total: 31.30 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.23 Total: -10.38 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -5.60 Total: -126.88 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -77.52 1.27 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034798383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.331 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds