Wall clock time and date at job start Sat Apr 11 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00590 * 2 1 4 4 H 1.48498 * 109.47443 * 270.00468 * 3 2 1 5 5 H 1.48507 * 109.47050 * 30.00237 * 3 2 1 6 6 H 1.48497 * 109.47318 * 150.00217 * 3 2 1 7 7 C 1.38816 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00459 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.47668 * 134.46049 * 180.02562 * 9 7 2 11 11 C 1.53507 * 85.98196 * 204.29777 * 10 9 7 12 12 C 1.47671 * 134.45789 * 359.97438 * 9 7 2 13 13 C 1.52673 * 113.57619 * 91.01323 * 11 10 9 14 14 C 1.53334 * 109.10682 * 73.81451 * 13 11 10 15 15 N 1.46878 * 108.76445 * 52.40949 * 14 13 11 16 16 C 1.34779 * 120.47017 * 124.47206 * 15 14 13 17 17 O 1.21650 * 119.99538 * 4.21188 * 16 15 14 18 18 C 1.47061 * 120.00210 * 184.21827 * 16 15 14 19 19 C 1.35864 * 125.43165 * 136.70743 * 18 16 15 20 20 C 1.41584 * 107.72308 * 180.02562 * 19 18 16 21 21 C 1.40107 * 133.37546 * 180.02562 * 20 19 18 22 22 C 1.36439 * 119.82634 * 179.97438 * 21 20 19 23 23 C 1.38937 * 120.62024 * 0.02562 * 22 21 20 24 24 C 1.37669 * 120.64467 * 0.02562 * 23 22 21 25 25 C 1.39223 * 119.81204 * 359.67264 * 24 23 22 26 26 N 1.37482 * 133.18033 * 179.60541 * 25 24 23 27 27 H 0.97005 * 125.60098 * 0.77164 * 26 25 24 28 28 C 1.46883 * 119.06892 * 304.74001 * 15 14 13 29 29 C 1.52676 * 113.56262 * 222.23465 * 11 10 9 30 30 H 0.97000 * 119.99230 * 359.97438 * 1 2 3 31 31 H 1.09001 * 113.79195 * 90.02745 * 10 9 7 32 32 H 1.09008 * 113.78711 * 318.56664 * 10 9 7 33 33 H 1.09000 * 113.78996 * 41.43054 * 12 9 7 34 34 H 1.09002 * 113.78552 * 269.96827 * 12 9 7 35 35 H 1.09001 * 109.53098 * 313.92959 * 13 11 10 36 36 H 1.08994 * 109.59227 * 193.74038 * 13 11 10 37 37 H 1.08995 * 109.59316 * 292.62135 * 14 13 11 38 38 H 1.09007 * 109.58467 * 172.18883 * 14 13 11 39 39 H 1.08004 * 126.13561 * 0.04519 * 19 18 16 40 40 H 1.07996 * 120.08787 * 359.94967 * 21 20 19 41 41 H 1.08006 * 119.69322 * 180.02562 * 22 21 20 42 42 H 1.08001 * 119.67724 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.09503 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.59627 * 175.04241 * 28 15 14 45 45 H 1.09003 * 109.58614 * 295.47939 * 28 15 14 46 46 H 1.09002 * 109.53225 * 46.07224 * 29 11 10 47 47 H 1.08997 * 109.53159 * 166.21941 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7210 -3.8108 -0.0005 11 6 0.3475 -4.0810 -0.6306 12 6 -0.1045 -2.7567 0.0004 13 6 0.3609 -4.0585 -2.1571 14 6 1.0375 -5.3345 -2.6720 15 7 0.3916 -6.4966 -2.0477 16 6 -0.1308 -7.4788 -2.8086 17 8 -0.0021 -7.4451 -4.0178 18 6 -0.8564 -8.5912 -2.1771 19 6 -2.0247 -9.1230 -2.6221 20 6 -2.3872 -10.1677 -1.7379 21 6 -3.4693 -11.0563 -1.6906 22 6 -3.5463 -11.9793 -0.6887 23 6 -2.5607 -12.0471 0.2882 24 6 -1.4882 -11.1843 0.2641 25 6 -1.3840 -10.2379 -0.7517 26 7 -0.4600 -9.2602 -1.0353 27 1 0.3415 -9.0744 -0.5214 28 6 0.3176 -6.5704 -0.5826 29 6 -0.3584 -5.3056 -0.0537 30 1 -0.4849 0.8401 0.0004 31 1 1.8383 -4.2346 0.9968 32 1 2.5593 -4.0341 -0.6606 33 1 -0.7174 -2.1420 -0.6588 34 1 -0.5293 -2.8674 0.9981 35 1 0.9157 -3.1866 -2.5039 36 1 -0.6618 -4.0120 -2.5310 37 1 2.0951 -5.3191 -2.4089 38 1 0.9290 -5.3941 -3.7550 39 1 -2.5775 -8.8060 -3.4941 40 1 -4.2407 -11.0107 -2.4451 41 1 -4.3813 -12.6635 -0.6546 42 1 -2.6371 -12.7834 1.0746 43 1 -0.7273 -11.2447 1.0282 44 1 -0.2648 -7.4439 -0.2896 45 1 1.3236 -6.6438 -0.1692 46 1 -0.2943 -5.2843 1.0343 47 1 -1.4052 -5.2996 -0.3573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035850232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:19 Heat of formation + Delta-G solvation = 92.008937 kcal Electronic energy + Delta-G solvation = -29177.964353 eV Core-core repulsion = 25328.186389 eV Total energy + Delta-G solvation = -3849.777964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93038 -40.17443 -38.71531 -37.01599 -35.90109 -32.59074 -32.41769 -31.35441 -30.65120 -29.62233 -29.13812 -26.94761 -25.17515 -24.58198 -23.67361 -22.74823 -22.25700 -21.46713 -20.95498 -19.88389 -18.31664 -17.64315 -17.09145 -16.75091 -16.17469 -16.06133 -15.42444 -14.91327 -14.84599 -14.64188 -14.45261 -14.37577 -14.05642 -13.82079 -13.70674 -13.51492 -13.13882 -13.07203 -12.61045 -12.44222 -12.18707 -11.97703 -11.81036 -11.77385 -11.18931 -11.15034 -11.09027 -10.91212 -10.87314 -10.41848 -10.28298 -10.15211 -10.10478 -9.75533 -9.61853 -9.39910 -8.81416 -8.64365 -8.44638 -8.01714 -6.88779 -5.78316 -3.10359 0.61937 1.36570 1.95759 2.56333 2.71505 3.21938 3.37336 3.42301 3.44150 3.65791 4.25292 4.43018 4.43555 4.75005 4.75581 4.84665 4.94062 5.03743 5.11875 5.15717 5.20813 5.21411 5.28250 5.41103 5.43892 5.49675 5.61211 5.70005 5.76658 5.77537 5.83089 5.86381 6.07456 6.16870 6.20541 6.23747 6.29177 6.33663 6.37993 6.43613 6.54103 6.58436 6.74939 6.79441 6.82727 7.09716 7.20607 7.27240 7.33770 7.56204 7.95800 7.97058 9.03376 9.69592 10.59139 11.38590 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.002382 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.199454 B =11749.990886 C =12194.519865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.109 4.109 12 C 0.174 3.826 13 C -0.097 4.097 14 C 0.113 3.887 15 N -0.596 5.596 16 C 0.579 3.421 17 O -0.526 6.526 18 C 0.035 3.965 19 C -0.124 4.124 20 C -0.113 4.113 21 C -0.063 4.063 22 C -0.150 4.150 23 C -0.092 4.092 24 C -0.130 4.130 25 C 0.106 3.894 26 N -0.577 5.577 27 H 0.421 0.579 28 C 0.095 3.905 29 C -0.117 4.117 30 H 0.253 0.747 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.153 0.847 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -23.885 -0.122 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.000 4.000 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.135 4.135 14 C -0.008 4.008 15 N -0.328 5.328 16 C 0.366 3.634 17 O -0.402 6.402 18 C -0.075 4.075 19 C -0.150 4.150 20 C -0.118 4.118 21 C -0.081 4.081 22 C -0.169 4.169 23 C -0.112 4.112 24 C -0.151 4.151 25 C -0.004 4.004 26 N -0.184 5.184 27 H 0.261 0.739 28 C -0.028 4.028 29 C -0.156 4.156 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.508 -23.387 -0.733 23.828 hybrid contribution 0.863 1.119 0.672 1.565 sum -3.645 -22.268 -0.061 22.564 Atomic orbital electron populations 1.69815 1.04982 1.25297 1.56681 1.24767 0.95645 0.97461 1.02548 0.86155 0.78579 0.83593 0.77627 1.21532 1.21680 1.20771 1.18998 0.90195 0.82063 1.43764 0.90415 1.45953 1.02327 0.99137 1.86026 1.22589 0.94324 0.86761 0.96322 1.22407 0.97973 0.95524 0.95140 1.22231 0.88102 0.88272 0.96548 1.21498 1.01086 0.96725 0.94156 1.21794 0.96368 0.83828 0.98801 1.48112 1.56516 1.21211 1.06990 1.17326 0.78403 0.81317 0.86389 1.90843 1.58413 1.77668 1.13269 1.20105 0.98576 0.98509 0.90282 1.20815 0.95967 0.97225 1.01016 1.18188 0.96809 0.99567 0.97217 1.20410 0.96047 0.93639 0.98045 1.20630 0.99971 1.00323 0.95953 1.20858 0.93545 0.98130 0.98667 1.20070 1.00507 0.96483 0.98021 1.18356 0.91013 0.93038 0.97947 1.42353 1.22877 1.29284 1.23889 0.73896 1.22012 1.01535 1.00025 0.79264 1.21718 0.99773 0.93560 1.00517 0.93667 0.95245 0.94163 0.90916 0.95753 0.89191 0.91933 0.91056 0.89035 0.82972 0.85799 0.85965 0.85656 0.86030 0.90052 0.90855 0.90567 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 11.39 55.49 0.63 -26.34 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -14.97 3.53 -179.73 -0.64 -15.61 16 10 C 0.13 2.40 7.72 -3.15 -0.02 2.37 16 11 C -0.11 -1.87 0.77 -154.41 -0.12 -1.99 16 12 C 0.17 3.91 6.64 -3.15 -0.02 3.89 16 13 C -0.10 -1.59 5.22 -26.73 -0.14 -1.73 16 14 C 0.11 1.61 6.29 -3.66 -0.02 1.59 16 15 N -0.60 -7.78 2.95 -174.36 -0.51 -8.30 16 16 C 0.58 8.17 7.57 -12.68 -0.10 8.08 16 17 O -0.53 -9.06 16.48 5.23 0.09 -8.98 16 18 C 0.03 0.42 5.95 -82.30 -0.49 -0.07 16 19 C -0.12 -1.47 10.75 -39.16 -0.42 -1.89 16 20 C -0.11 -1.24 6.16 -106.93 -0.66 -1.90 16 21 C -0.06 -0.57 10.06 -39.53 -0.40 -0.97 16 22 C -0.15 -1.17 9.96 -39.97 -0.40 -1.56 16 23 C -0.09 -0.69 10.01 -39.53 -0.40 -1.09 16 24 C -0.13 -1.08 10.08 -39.42 -0.40 -1.48 16 25 C 0.11 1.08 7.25 -83.98 -0.61 0.47 16 26 N -0.58 -5.64 4.68 -7.36 -0.03 -5.68 16 27 H 0.42 3.15 7.50 -40.82 -0.31 2.85 16 28 C 0.09 1.05 5.66 -3.91 -0.02 1.03 16 29 C -0.12 -1.58 5.24 -26.97 -0.14 -1.72 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.04 0.73 7.41 -51.92 -0.38 0.35 16 33 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 34 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.09 1.71 8.01 -51.93 -0.42 1.29 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 38 H 0.09 1.35 6.99 -51.93 -0.36 0.98 16 39 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.08 0.78 4.31 -51.93 -0.22 0.56 16 45 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 46 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -32.82 375.36 -11.08 -43.90 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.64 Total: 1.94 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -4.61 Total: -3.56 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.55 Total: -55.92 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.82 -11.08 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035850232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.914 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds