Wall clock time and date at job start Sat Apr 11 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00033 * 2 1 4 4 H 1.48501 * 109.47247 * 240.00182 * 3 2 1 5 5 H 1.48502 * 109.47459 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47589 * 119.99779 * 3 2 1 7 7 C 1.38807 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00265 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.47428 * 126.05422 * 0.02919 * 9 7 2 11 11 C 1.54501 * 107.14761 * 181.57108 * 10 9 7 12 12 C 1.56012 * 102.62327 * 22.82833 * 11 10 9 13 13 H 1.09002 * 112.89397 * 202.90140 * 12 11 10 14 14 C 1.52729 * 106.47433 * 78.39428 * 12 11 10 15 15 N 1.46534 * 110.47008 * 203.09889 * 14 12 11 16 16 C 1.34779 * 121.01502 * 235.56156 * 15 14 12 17 17 O 1.21669 * 119.99689 * 5.26290 * 16 15 14 18 18 C 1.46906 * 119.99740 * 185.26029 * 16 15 14 19 19 C 1.36365 * 126.77227 * 40.99332 * 18 16 15 20 20 N 1.35472 * 109.77052 * 180.02562 * 19 18 16 21 21 H 0.97011 * 124.78314 * 179.97438 * 20 19 18 22 22 C 1.37958 * 110.42738 * 359.97438 * 20 19 18 23 23 C 1.39124 * 133.18930 * 180.02562 * 22 20 19 24 24 C 1.37767 * 119.92684 * 180.02562 * 23 22 20 25 25 C 1.38754 * 120.63955 * 0.02562 * 24 23 22 26 26 C 1.37757 * 120.29819 * 359.97223 * 25 24 23 27 27 C 1.39288 * 119.66884 * 0.02645 * 26 25 24 28 28 C 1.47148 * 117.96972 * 55.28953 * 15 14 12 29 29 C 1.53044 * 107.68678 * 302.82948 * 28 15 14 30 30 C 1.46463 * 126.05495 * 179.97438 * 9 7 2 31 31 H 1.08995 * 108.34548 * 269.17640 * 30 9 7 32 32 H 0.97005 * 119.99779 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.90395 * 300.94919 * 10 9 7 34 34 H 1.08995 * 109.90952 * 62.18917 * 10 9 7 35 35 H 1.08997 * 110.78030 * 141.11087 * 11 10 9 36 36 H 1.09000 * 110.77929 * 264.53927 * 11 10 9 37 37 H 1.08998 * 109.25509 * 82.77493 * 14 12 11 38 38 H 1.09000 * 109.17955 * 323.38216 * 14 12 11 39 39 H 1.08005 * 125.11661 * 0.03233 * 19 18 16 40 40 H 1.07998 * 120.03698 * 0.03418 * 23 22 20 41 41 H 1.07997 * 119.68014 * 180.27431 * 24 23 22 42 42 H 1.07996 * 119.85262 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.16632 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.81430 * 62.37662 * 28 15 14 45 45 H 1.08996 * 109.81210 * 183.22296 * 28 15 14 46 46 H 1.08996 * 109.15203 * 174.82352 * 29 28 15 47 47 H 1.08999 * 109.15391 * 294.03706 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1406 -2.5435 0.0017 11 6 -0.4379 -4.0591 0.0435 12 6 0.8716 -4.6467 0.6548 13 1 1.0211 -5.6975 0.4068 14 6 0.7986 -4.3942 2.1593 15 7 2.1420 -4.3923 2.7445 16 6 2.4560 -5.2142 3.7654 17 8 1.6498 -6.0393 4.1522 18 6 3.7717 -5.1138 4.4112 19 6 4.4427 -3.9684 4.7232 20 7 5.6250 -4.2750 5.3092 21 1 6.2748 -3.6242 5.6180 22 6 5.7745 -5.6431 5.4047 23 6 6.7813 -6.4577 5.9131 24 6 6.6454 -7.8279 5.8676 25 6 5.5113 -8.4082 5.3177 26 6 4.5035 -7.6185 4.8092 27 6 4.6277 -6.2317 4.8487 28 6 3.1396 -3.4700 2.1793 29 6 3.2667 -3.7806 0.6861 30 6 1.9199 -3.7266 0.0017 31 1 2.0447 -4.0467 -1.0327 32 1 -0.4850 0.8401 0.0004 33 1 -0.5652 -2.0577 0.8802 34 1 -0.5600 -2.1080 -0.9052 35 1 -1.2926 -4.2678 0.6869 36 1 -0.6046 -4.4483 -0.9609 37 1 0.2023 -5.1778 2.6268 38 1 0.3256 -3.4285 2.3378 39 1 4.0852 -2.9673 4.5320 40 1 7.6683 -6.0165 6.3430 41 1 7.4273 -8.4564 6.2674 42 1 5.4181 -9.4837 5.2882 43 1 3.6215 -8.0723 4.3821 44 1 2.8097 -2.4401 2.3157 45 1 4.1006 -3.6183 2.6716 46 1 3.9317 -3.0508 0.2244 47 1 3.6896 -4.7776 0.5630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036764592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:23 Heat of formation + Delta-G solvation = 61.071251 kcal Electronic energy + Delta-G solvation = -30072.447314 eV Core-core repulsion = 26221.327791 eV Total energy + Delta-G solvation = -3851.119523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56705 -39.77173 -37.95173 -37.04407 -34.87664 -32.87540 -32.05561 -31.57637 -29.73591 -29.56431 -28.85135 -27.39832 -25.38646 -24.15016 -23.11719 -22.50414 -22.01930 -21.80951 -20.02410 -19.25995 -18.44091 -17.62761 -16.73989 -16.47176 -16.11663 -15.70159 -15.35509 -15.00893 -14.88832 -14.42899 -14.26093 -14.12987 -13.90408 -13.86702 -13.46423 -13.07380 -12.81031 -12.52684 -12.35984 -12.12396 -11.84541 -11.76449 -11.49734 -11.39229 -11.12177 -11.07940 -10.99096 -10.77951 -10.63807 -10.19235 -9.98476 -9.89953 -9.83950 -9.62791 -9.59214 -9.44670 -8.62233 -8.40940 -8.13434 -7.79917 -6.83043 -5.73942 -3.06497 0.92670 1.45679 2.11043 2.85670 3.22521 3.34590 3.39944 3.42182 3.54483 3.85507 4.45467 4.56728 4.68055 4.79103 4.96900 5.08397 5.20153 5.25942 5.34143 5.39004 5.43171 5.53323 5.58624 5.59902 5.64734 5.66276 5.83169 5.93513 5.94377 6.08346 6.18486 6.28613 6.31395 6.34940 6.38512 6.41831 6.46010 6.51222 6.55526 6.58603 6.76611 6.82210 6.93779 6.97239 7.02024 7.24958 7.54341 7.61915 7.80038 7.88500 8.23069 8.57758 9.18559 9.80902 10.49455 11.38065 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.003401 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.515041 B = 8230.252884 C = 9390.934656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.129 3.871 15 N -0.596 5.596 16 C 0.588 3.412 17 O -0.553 6.553 18 C -0.214 4.214 19 C 0.102 3.898 20 N -0.582 5.582 21 H 0.419 0.581 22 C 0.087 3.913 23 C -0.128 4.128 24 C -0.102 4.102 25 C -0.144 4.144 26 C -0.064 4.064 27 C -0.065 4.065 28 C 0.108 3.892 29 C -0.127 4.127 30 C 0.171 3.829 31 H 0.016 0.984 32 H 0.252 0.748 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.183 0.817 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 -11.132 9.742 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.137 4.137 13 H 0.095 0.905 14 C 0.007 3.993 15 N -0.327 5.327 16 C 0.376 3.624 17 O -0.432 6.432 18 C -0.224 4.224 19 C -0.029 4.029 20 N -0.184 5.184 21 H 0.257 0.743 22 C -0.019 4.019 23 C -0.149 4.149 24 C -0.122 4.122 25 C -0.163 4.163 26 C -0.082 4.082 27 C -0.070 4.070 28 C -0.015 4.015 29 C -0.166 4.166 30 C 0.063 3.937 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.200 0.800 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.444 -11.206 9.967 18.864 hybrid contribution 0.772 1.451 -0.049 1.644 sum 12.215 -9.755 9.918 18.513 Atomic orbital electron populations 1.69945 1.04829 1.25065 1.56842 1.24764 0.95615 0.97457 1.02480 0.86285 0.78484 0.83682 0.77773 1.21292 1.21718 1.21325 1.18898 0.90298 0.82223 1.43817 0.90467 1.44309 1.01503 0.99362 1.86766 1.21234 0.84287 0.88316 1.00916 1.23142 0.95961 0.99566 0.99488 1.22659 0.97730 0.98460 0.94812 0.90519 1.21421 0.82610 1.02794 0.92520 1.47940 1.13284 1.38647 1.32841 1.17245 0.85345 0.80330 0.79435 1.90741 1.50809 1.36720 1.64922 1.20034 0.97626 0.92166 1.12610 1.22218 0.85299 0.99495 0.95895 1.41528 1.18206 1.05755 1.52878 0.74340 1.18238 0.97377 0.83003 1.03265 1.19991 0.97723 0.92980 1.04207 1.20786 0.98038 0.93551 0.99777 1.20931 0.94276 0.99687 1.01415 1.20615 0.98674 0.91251 0.97672 1.18760 0.93480 0.92965 1.01754 1.21967 0.91215 0.94324 0.93959 1.21569 0.99075 1.00723 0.95267 1.20245 0.90826 0.87027 0.95586 0.96628 0.93745 0.93505 0.94042 0.91988 0.92391 0.90253 0.90397 0.80001 0.86220 0.85754 0.85861 0.85499 0.89386 0.90610 0.90806 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.83 10.38 55.49 0.58 -25.25 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.22 -5.67 9.02 -15.06 -0.14 -5.81 16 8 H 0.08 1.86 6.69 -52.49 -0.35 1.51 16 9 N -0.59 -13.86 3.12 -164.48 -0.51 -14.37 16 10 C 0.18 4.09 4.64 -2.75 -0.01 4.07 16 11 C -0.14 -2.62 6.28 -24.33 -0.15 -2.78 16 12 C -0.12 -2.07 3.84 -88.62 -0.34 -2.41 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 2.33 5.44 -4.16 -0.02 2.31 16 15 N -0.60 -10.21 2.94 -174.74 -0.51 -10.72 16 16 C 0.59 10.35 7.60 -12.75 -0.10 10.25 16 17 O -0.55 -11.35 16.54 5.22 0.09 -11.26 16 18 C -0.21 -3.18 5.40 -103.32 -0.56 -3.74 16 19 C 0.10 1.17 9.45 -16.62 -0.16 1.01 16 20 N -0.58 -5.53 5.99 -10.49 -0.06 -5.60 16 21 H 0.42 2.46 8.96 -40.82 -0.37 2.10 16 22 C 0.09 1.01 7.26 -83.97 -0.61 0.40 16 23 C -0.13 -1.24 10.07 -39.42 -0.40 -1.64 16 24 C -0.10 -0.96 10.01 -39.56 -0.40 -1.35 16 25 C -0.14 -1.53 10.03 -39.57 -0.40 -1.93 16 26 C -0.06 -0.85 10.09 -39.37 -0.40 -1.25 16 27 C -0.06 -0.93 6.36 -104.95 -0.67 -1.59 16 28 C 0.11 1.72 5.51 -3.67 -0.02 1.70 16 29 C -0.13 -2.17 5.19 -27.63 -0.14 -2.31 16 30 C 0.17 3.35 2.85 -68.34 -0.19 3.15 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 1.19 6.99 -51.93 -0.36 0.83 16 34 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 35 H 0.06 1.04 7.97 -51.93 -0.41 0.63 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.45 6.99 -51.93 -0.36 1.08 16 38 H 0.08 1.56 6.79 -51.93 -0.35 1.21 16 39 H 0.18 1.74 7.28 -52.48 -0.38 1.35 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.59 7.48 -51.93 -0.39 1.20 16 45 H 0.08 1.02 4.69 -51.93 -0.24 0.78 16 46 H 0.07 1.28 7.01 -51.93 -0.36 0.91 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -31.97 365.91 -11.23 -43.20 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.50 Total: 4.72 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -4.79 Total: -2.18 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.51 Total: -55.94 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.97 -11.23 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036764592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.274 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds