Wall clock time and date at job start Sat Apr 11 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00033 * 2 1 4 4 H 1.48501 * 109.47247 * 240.00182 * 3 2 1 5 5 H 1.48502 * 109.47459 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47589 * 119.99779 * 3 2 1 7 7 C 1.38807 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00265 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.47428 * 126.05422 * 0.02919 * 9 7 2 11 11 C 1.54501 * 107.14761 * 181.57108 * 10 9 7 12 12 C 1.56012 * 102.62327 * 22.82833 * 11 10 9 13 13 H 1.09002 * 112.89397 * 202.90140 * 12 11 10 14 14 C 1.52729 * 106.47433 * 78.39428 * 12 11 10 15 15 N 1.46534 * 110.47008 * 203.09889 * 14 12 11 16 16 C 1.34779 * 121.01502 * 235.56156 * 15 14 12 17 17 O 1.21669 * 119.99689 * 5.26290 * 16 15 14 18 18 C 1.46906 * 119.99740 * 185.26029 * 16 15 14 19 19 C 1.36365 * 126.77227 * 40.99332 * 18 16 15 20 20 N 1.35472 * 109.77052 * 180.02562 * 19 18 16 21 21 H 0.97011 * 124.78314 * 179.97438 * 20 19 18 22 22 C 1.37958 * 110.42738 * 359.97438 * 20 19 18 23 23 C 1.39124 * 133.18930 * 180.02562 * 22 20 19 24 24 C 1.37767 * 119.92684 * 180.02562 * 23 22 20 25 25 C 1.38754 * 120.63955 * 0.02562 * 24 23 22 26 26 C 1.37757 * 120.29819 * 359.97223 * 25 24 23 27 27 C 1.39288 * 119.66884 * 0.02645 * 26 25 24 28 28 C 1.47148 * 117.96972 * 55.28953 * 15 14 12 29 29 C 1.53044 * 107.68678 * 302.82948 * 28 15 14 30 30 C 1.46463 * 126.05495 * 179.97438 * 9 7 2 31 31 H 1.08995 * 108.34548 * 269.17640 * 30 9 7 32 32 H 0.97005 * 119.99779 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.90395 * 300.94919 * 10 9 7 34 34 H 1.08995 * 109.90952 * 62.18917 * 10 9 7 35 35 H 1.08997 * 110.78030 * 141.11087 * 11 10 9 36 36 H 1.09000 * 110.77929 * 264.53927 * 11 10 9 37 37 H 1.08998 * 109.25509 * 82.77493 * 14 12 11 38 38 H 1.09000 * 109.17955 * 323.38216 * 14 12 11 39 39 H 1.08005 * 125.11661 * 0.03233 * 19 18 16 40 40 H 1.07998 * 120.03698 * 0.03418 * 23 22 20 41 41 H 1.07997 * 119.68014 * 180.27431 * 24 23 22 42 42 H 1.07996 * 119.85262 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.16632 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.81430 * 62.37662 * 28 15 14 45 45 H 1.08996 * 109.81210 * 183.22296 * 28 15 14 46 46 H 1.08996 * 109.15203 * 174.82352 * 29 28 15 47 47 H 1.08999 * 109.15391 * 294.03706 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1406 -2.5435 0.0017 11 6 -0.4379 -4.0591 0.0435 12 6 0.8716 -4.6467 0.6548 13 1 1.0211 -5.6975 0.4068 14 6 0.7986 -4.3942 2.1593 15 7 2.1420 -4.3923 2.7445 16 6 2.4560 -5.2142 3.7654 17 8 1.6498 -6.0393 4.1522 18 6 3.7717 -5.1138 4.4112 19 6 4.4427 -3.9684 4.7232 20 7 5.6250 -4.2750 5.3092 21 1 6.2748 -3.6242 5.6180 22 6 5.7745 -5.6431 5.4047 23 6 6.7813 -6.4577 5.9131 24 6 6.6454 -7.8279 5.8676 25 6 5.5113 -8.4082 5.3177 26 6 4.5035 -7.6185 4.8092 27 6 4.6277 -6.2317 4.8487 28 6 3.1396 -3.4700 2.1793 29 6 3.2667 -3.7806 0.6861 30 6 1.9199 -3.7266 0.0017 31 1 2.0447 -4.0467 -1.0327 32 1 -0.4850 0.8401 0.0004 33 1 -0.5652 -2.0577 0.8802 34 1 -0.5600 -2.1080 -0.9052 35 1 -1.2926 -4.2678 0.6869 36 1 -0.6046 -4.4483 -0.9609 37 1 0.2023 -5.1778 2.6268 38 1 0.3256 -3.4285 2.3378 39 1 4.0852 -2.9673 4.5320 40 1 7.6683 -6.0165 6.3430 41 1 7.4273 -8.4564 6.2674 42 1 5.4181 -9.4837 5.2882 43 1 3.6215 -8.0723 4.3821 44 1 2.8097 -2.4401 2.3157 45 1 4.1006 -3.6183 2.6716 46 1 3.9317 -3.0508 0.2244 47 1 3.6896 -4.7776 0.5630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036764592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:23 Heat of formation + Delta-G solvation = 42.499647 kcal Electronic energy + Delta-G solvation = -30073.252639 eV Core-core repulsion = 26221.327791 eV Total energy + Delta-G solvation = -3851.924848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49072 -41.19048 -39.44737 -37.87420 -36.40596 -34.62809 -33.17720 -33.00754 -31.17521 -30.45830 -30.12748 -28.89059 -26.96509 -25.83488 -24.14750 -23.77112 -23.24296 -22.65837 -21.78451 -20.59422 -19.67728 -18.82224 -18.18382 -17.84762 -17.21284 -16.98823 -16.66929 -16.35514 -16.17658 -15.93110 -15.65125 -15.35156 -15.12397 -14.84967 -14.66695 -14.39479 -14.30405 -13.90724 -13.82377 -13.51022 -13.16672 -13.08225 -12.78896 -12.71091 -12.60341 -12.54663 -12.47440 -12.22123 -12.00691 -11.91964 -11.62225 -11.50959 -11.43837 -11.18464 -10.95931 -10.63625 -10.59163 -9.57002 -9.24789 -8.78664 -8.70304 -7.75269 -5.08702 0.05387 0.61670 1.09539 1.50295 1.53003 1.58723 1.93100 2.06903 2.33369 2.55772 2.96842 3.43753 3.57182 3.68825 3.72463 3.85781 3.90808 3.99028 4.08933 4.22350 4.25547 4.27440 4.36959 4.40463 4.49453 4.58947 4.60183 4.63728 4.73927 4.78017 4.81180 4.85231 4.90205 4.98619 5.12722 5.14594 5.26250 5.28665 5.39824 5.47576 5.54503 5.58107 5.62089 5.65619 5.71169 5.72650 5.83232 6.15172 6.27094 6.53916 6.57488 7.17774 7.23315 7.87480 8.55398 9.36252 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.003401 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.515041 B = 8230.252884 C = 9390.934656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.218 4.218 8 H 0.092 0.908 9 N -0.606 5.606 10 C 0.187 3.813 11 C -0.130 4.130 12 C -0.104 4.104 13 H 0.098 0.902 14 C 0.135 3.865 15 N -0.596 5.596 16 C 0.588 3.412 17 O -0.592 6.592 18 C -0.259 4.259 19 C 0.127 3.873 20 N -0.561 5.561 21 H 0.440 0.560 22 C 0.077 3.923 23 C -0.120 4.120 24 C -0.103 4.103 25 C -0.138 4.138 26 C -0.100 4.100 27 C -0.094 4.094 28 C 0.117 3.883 29 C -0.123 4.123 30 C 0.164 3.836 31 H 0.012 0.988 32 H 0.242 0.758 33 H 0.014 0.986 34 H 0.004 0.996 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.203 0.797 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.831 -11.955 11.051 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.347 4.347 8 H 0.109 0.891 9 N -0.332 5.332 10 C 0.062 3.938 11 C -0.169 4.169 12 C -0.125 4.125 13 H 0.116 0.884 14 C 0.013 3.987 15 N -0.327 5.327 16 C 0.379 3.621 17 O -0.475 6.475 18 C -0.270 4.270 19 C -0.007 4.007 20 N -0.164 5.164 21 H 0.281 0.719 22 C -0.028 4.028 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.157 4.157 26 C -0.119 4.119 27 C -0.098 4.098 28 C -0.005 4.005 29 C -0.162 4.162 30 C 0.058 3.942 31 H 0.030 0.970 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.022 0.978 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.220 0.780 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.477 -12.045 11.288 22.628 hybrid contribution -0.389 1.615 -0.419 1.713 sum 15.089 -10.430 10.869 21.321 Atomic orbital electron populations 1.70181 1.06359 1.24841 1.59046 1.25539 0.96328 1.00670 1.03545 0.85284 0.77086 0.79488 0.78292 1.20764 1.23244 1.19693 1.19320 0.91083 0.82886 1.41424 0.89076 1.44526 1.01769 1.00502 1.86365 1.20949 0.84312 0.91056 0.97515 1.23023 0.97026 0.95979 1.00851 1.22615 0.96519 0.99108 0.94208 0.88406 1.21211 0.83464 1.01209 0.92861 1.47957 1.12920 1.38902 1.32905 1.17680 0.86115 0.79362 0.78903 1.90703 1.52312 1.38415 1.66025 1.19878 0.97312 0.94095 1.15730 1.22403 0.85133 0.99246 0.93906 1.41481 1.17762 1.05665 1.51457 0.71892 1.18445 0.97161 0.83704 1.03508 1.20449 0.97976 0.92990 1.02584 1.21228 0.98100 0.94066 0.98808 1.21239 0.93856 1.00591 0.99969 1.20637 0.99335 0.91743 1.00158 1.19011 0.94660 0.93281 1.02872 1.21925 0.92149 0.92807 0.93613 1.21522 0.97345 1.01840 0.95494 1.20433 0.92547 0.85344 0.95890 0.97009 0.94899 0.96827 0.97788 0.90424 0.90944 0.90561 0.92908 0.78034 0.82776 0.82294 0.83952 0.87779 0.91490 0.87599 0.90694 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.95 10.38 21.65 0.22 -55.72 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.97 43.52 29.55 68.60 2.03 45.55 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.22 -11.10 9.02 84.03 0.76 -10.34 16 8 H 0.09 4.29 6.69 -2.91 -0.02 4.27 16 9 N -0.61 -28.75 3.12 -674.30 -2.11 -30.85 16 10 C 0.19 9.00 4.64 86.71 0.40 9.40 16 11 C -0.13 -4.81 6.28 32.15 0.20 -4.60 16 12 C -0.10 -3.67 3.84 -9.50 -0.04 -3.70 16 13 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 14 C 0.14 4.99 5.44 86.28 0.47 5.46 16 15 N -0.60 -20.39 2.94 -824.97 -2.43 -22.82 16 16 C 0.59 20.96 7.60 86.51 0.66 21.62 16 17 O -0.59 -25.24 16.54 -4.25 -0.07 -25.31 16 18 C -0.26 -7.53 5.40 -19.02 -0.10 -7.64 16 19 C 0.13 2.61 9.45 83.69 0.79 3.40 16 20 N -0.56 -8.74 5.99 -187.09 -1.12 -9.86 16 21 H 0.44 3.25 8.96 -92.70 -0.83 2.42 16 22 C 0.08 1.58 7.26 38.91 0.28 1.86 16 23 C -0.12 -1.82 10.07 22.37 0.23 -1.59 16 24 C -0.10 -1.54 10.01 22.28 0.22 -1.31 16 25 C -0.14 -2.68 10.03 22.28 0.22 -2.45 16 26 C -0.10 -2.69 10.09 22.41 0.23 -2.46 16 27 C -0.09 -2.60 6.36 -20.08 -0.13 -2.73 16 28 C 0.12 3.60 5.51 86.27 0.48 4.07 16 29 C -0.12 -3.99 5.19 30.01 0.16 -3.84 16 30 C 0.16 6.34 2.85 44.74 0.13 6.46 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.24 14.06 8.31 -92.70 -0.77 13.29 16 33 H 0.01 0.74 6.99 -2.39 -0.02 0.72 16 34 H 0.00 0.21 7.57 -2.39 -0.02 0.20 16 35 H 0.08 2.62 7.97 -2.39 -0.02 2.60 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.08 2.85 6.99 -2.39 -0.02 2.84 16 38 H 0.05 2.21 6.79 -2.39 -0.02 2.19 16 39 H 0.20 3.27 7.28 -2.91 -0.02 3.24 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.10 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.07 2.37 7.48 -2.39 -0.02 2.35 16 45 H 0.11 2.61 4.69 -2.39 -0.01 2.60 16 46 H 0.07 2.43 7.01 -2.39 -0.02 2.41 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.75 365.91 2.12 -71.63 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.17 Total: 19.00 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.42 Total: 8.39 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -5.43 Total: -119.26 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.31 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -73.75 2.12 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036764592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.132 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds