Wall clock time and date at job start Sat Apr 11 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48500 * 109.47373 * 274.98446 * 3 2 1 5 5 H 1.48497 * 109.46840 * 34.98652 * 3 2 1 6 6 H 1.48504 * 109.46968 * 154.98165 * 3 2 1 7 7 C 1.38819 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99887 * 173.81172 * 7 2 1 9 9 N 1.36933 * 119.99887 * 353.80506 * 7 2 1 10 10 C 1.48161 * 126.40821 * 7.85589 * 9 7 2 11 11 C 1.55293 * 107.04149 * 175.09432 * 10 9 7 12 12 C 1.53737 * 101.84202 * 337.51980 * 11 10 9 13 13 H 1.09002 * 111.98311 * 280.76855 * 12 11 10 14 14 C 1.52242 * 114.75063 * 152.76893 * 12 11 10 15 15 N 1.47714 * 106.36597 * 190.40324 * 14 12 11 16 16 C 1.34776 * 119.68729 * 232.04236 * 15 14 12 17 17 O 1.21575 * 120.00085 * 5.27781 * 16 15 14 18 18 C 1.47659 * 119.99942 * 185.27413 * 16 15 14 19 19 C 1.40202 * 119.97453 * 213.57194 * 18 16 15 20 20 C 1.36312 * 120.66925 * 180.02562 * 19 18 16 21 21 C 1.39376 * 120.23720 * 0.24634 * 20 19 18 22 22 N 1.37392 * 133.24363 * 180.48755 * 21 20 19 23 23 H 0.97003 * 125.01383 * 359.28217 * 22 21 20 24 24 C 1.36865 * 109.98253 * 179.52641 * 22 21 20 25 25 C 1.34192 * 109.95501 * 359.72322 * 24 22 21 26 26 C 1.40875 * 119.63927 * 359.48271 * 21 20 19 27 27 C 1.39152 * 119.97113 * 33.59368 * 18 16 15 28 28 C 1.46603 * 120.62570 * 52.31657 * 15 14 12 29 29 C 1.55575 * 110.27707 * 311.58067 * 28 15 14 30 30 C 1.45470 * 126.40437 * 187.87935 * 9 7 2 31 31 H 1.08999 * 109.27281 * 93.76974 * 30 9 7 32 32 H 0.96998 * 119.99693 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.91930 * 294.44832 * 10 9 7 34 34 H 1.09007 * 109.91737 * 55.74782 * 10 9 7 35 35 H 1.09002 * 110.95164 * 219.37875 * 11 10 9 36 36 H 1.09003 * 110.95108 * 95.66158 * 11 10 9 37 37 H 1.09005 * 110.06330 * 71.19205 * 14 12 11 38 38 H 1.08996 * 110.06878 * 309.62209 * 14 12 11 39 39 H 1.08002 * 119.66668 * 359.97438 * 19 18 16 40 40 H 1.08002 * 119.88421 * 179.97438 * 20 19 18 41 41 H 1.07998 * 125.02160 * 179.74326 * 24 22 21 42 42 H 1.08003 * 126.54015 * 179.97438 * 25 24 22 43 43 H 1.07998 * 120.30423 * 0.02562 * 27 18 16 44 44 H 1.09001 * 109.25395 * 72.20255 * 28 15 14 45 45 H 1.09001 * 109.25607 * 191.63573 * 28 15 14 46 46 H 1.09002 * 110.72948 * 292.17861 * 29 28 15 47 47 H 1.09000 * 109.77966 * 170.68910 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0855 -1.2050 -0.1014 9 7 1.3315 -2.3847 0.1269 10 6 -0.1396 -2.5604 0.1107 11 6 -0.4161 -4.0876 0.1627 12 6 0.9045 -4.6657 -0.3714 13 1 0.9639 -4.6107 -1.4584 14 6 1.2359 -6.0651 0.1282 15 7 2.6299 -6.3335 -0.2800 16 6 2.9219 -7.4621 -0.9563 17 8 2.0286 -8.2063 -1.3116 18 6 4.3269 -7.7947 -1.2659 19 6 4.6422 -8.4643 -2.4567 20 6 5.9342 -8.7787 -2.7564 21 6 6.9610 -8.4413 -1.8764 22 7 8.3236 -8.6144 -1.9090 23 1 8.8121 -9.0514 -2.6241 24 6 8.8895 -8.0840 -0.7814 25 6 7.9382 -7.5545 0.0029 26 6 6.6578 -7.7632 -0.6793 27 6 5.3368 -7.4437 -0.3753 28 6 3.6998 -5.3867 0.0489 29 6 3.2749 -3.9394 -0.3319 30 6 1.9200 -3.7032 0.3040 31 1 1.9772 -3.9316 1.3682 32 1 -0.4849 0.8401 0.0004 33 1 -0.5814 -2.0730 0.9799 34 1 -0.5538 -2.1389 -0.8053 35 1 -1.2498 -4.3551 -0.4866 36 1 -0.5999 -4.4158 1.1858 37 1 0.5657 -6.7936 -0.3283 38 1 1.1497 -6.1048 1.2140 39 1 3.8533 -8.7344 -3.1431 40 1 6.1627 -9.2951 -3.6771 41 1 9.9458 -8.0905 -0.5562 42 1 8.0874 -7.0677 0.9554 43 1 5.0984 -6.9285 0.5434 44 1 3.9099 -5.4385 1.1172 45 1 4.5989 -5.6530 -0.5069 46 1 3.2003 -3.8312 -1.4140 47 1 3.9988 -3.2265 0.0627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036804684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:33 Heat of formation + Delta-G solvation = 50.748962 kcal Electronic energy + Delta-G solvation = -29442.391934 eV Core-core repulsion = 25590.824803 eV Total energy + Delta-G solvation = -3851.567131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31713 -41.41259 -39.76903 -37.55524 -36.82946 -34.58410 -33.11255 -32.93080 -31.66384 -30.59534 -29.82276 -29.24021 -26.77233 -25.60677 -24.19681 -23.61770 -22.99893 -21.90403 -21.71882 -21.16757 -20.20099 -19.05669 -18.64023 -17.83973 -17.33136 -16.94762 -16.79390 -16.29228 -16.02675 -15.68464 -15.38516 -15.31451 -15.05860 -14.89859 -14.58369 -14.46339 -14.13782 -13.95106 -13.81324 -13.53260 -13.40949 -13.30548 -13.17630 -13.05501 -12.66752 -12.56458 -12.40080 -12.09173 -12.01773 -11.84870 -11.75099 -11.61569 -11.47924 -11.02540 -10.90027 -10.67477 -10.63982 -9.73717 -9.20911 -8.84036 -8.67255 -7.83337 -5.16726 -0.01804 0.30746 1.47048 1.48364 1.57625 1.74309 1.86773 1.98797 2.26557 2.51998 2.88598 3.36377 3.39716 3.57133 3.71372 3.80753 3.90984 3.97082 4.01228 4.19922 4.21893 4.24059 4.33428 4.40590 4.42972 4.50391 4.65104 4.70200 4.70695 4.77306 4.81207 4.83320 4.91248 4.97098 5.05135 5.08795 5.11329 5.21663 5.32681 5.41200 5.50427 5.55111 5.57219 5.66520 5.68580 5.76693 5.78054 6.11628 6.22368 6.36908 6.71559 7.10710 7.10885 7.81172 8.51039 9.29678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.003010 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.522737 B = 9299.416652 C =10793.617068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.230 4.230 8 H 0.087 0.913 9 N -0.616 5.616 10 C 0.183 3.817 11 C -0.120 4.120 12 C -0.109 4.109 13 H 0.058 0.942 14 C 0.134 3.866 15 N -0.603 5.603 16 C 0.559 3.441 17 O -0.583 6.583 18 C -0.177 4.177 19 C -0.066 4.066 20 C -0.130 4.130 21 C 0.102 3.898 22 N -0.583 5.583 23 H 0.432 0.568 24 C 0.064 3.936 25 C -0.220 4.220 26 C -0.141 4.141 27 C -0.036 4.036 28 C 0.108 3.892 29 C -0.122 4.122 30 C 0.157 3.843 31 H 0.027 0.973 32 H 0.245 0.755 33 H 0.011 0.989 34 H 0.007 0.993 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.213 0.787 42 H 0.164 0.836 43 H 0.147 0.853 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.049 0.951 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.577 -19.972 -1.220 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.359 4.359 8 H 0.105 0.895 9 N -0.340 5.340 10 C 0.058 3.942 11 C -0.159 4.159 12 C -0.130 4.130 13 H 0.077 0.923 14 C 0.012 3.988 15 N -0.333 5.333 16 C 0.351 3.649 17 O -0.465 6.465 18 C -0.181 4.181 19 C -0.086 4.086 20 C -0.150 4.150 21 C -0.008 4.008 22 N -0.187 5.187 23 H 0.272 0.728 24 C -0.061 4.061 25 C -0.244 4.244 26 C -0.146 4.146 27 C -0.055 4.055 28 C -0.015 4.015 29 C -0.162 4.162 30 C 0.051 3.949 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.168 0.832 41 H 0.230 0.770 42 H 0.181 0.819 43 H 0.165 0.835 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.068 0.932 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.203 -20.159 -1.454 27.879 hybrid contribution -0.235 1.320 -0.520 1.438 sum 18.969 -18.839 -1.973 26.807 Atomic orbital electron populations 1.70181 1.06438 1.25117 1.58530 1.25666 0.96509 1.01027 1.03039 0.85127 0.78069 0.79512 0.77069 1.21827 1.22359 1.18816 1.19413 0.91559 0.83455 1.41518 0.89502 1.44514 1.02234 1.02141 1.85157 1.21294 0.83933 0.91464 0.97528 1.22575 0.96621 0.95187 1.01524 1.22461 0.96683 0.94686 0.99162 0.92304 1.21529 0.81746 0.95265 1.00250 1.48229 1.09422 1.20311 1.55387 1.18702 0.89106 0.80613 0.76524 1.90710 1.49597 1.51530 1.54680 1.19517 0.91701 1.07725 0.99187 1.20573 0.96576 0.96000 0.95448 1.19861 0.89975 1.04801 1.00408 1.18580 0.85263 1.00258 0.96668 1.41892 1.04133 1.51464 1.21174 0.72823 1.22515 1.00394 0.97272 0.85968 1.22072 0.89471 1.09846 1.02986 1.19479 0.94104 1.04261 0.96734 1.21100 0.90251 0.95358 0.98812 1.22699 0.89943 0.86828 1.02000 1.22124 0.97601 0.96282 1.00157 1.20909 0.93068 0.84822 0.96145 0.95514 0.94603 0.97083 0.97432 0.90514 0.90046 0.89457 0.89300 0.85460 0.83199 0.77046 0.81894 0.83546 0.88946 0.87255 0.93192 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.33 10.50 21.65 0.23 -58.10 16 2 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 3 Si 0.97 45.89 29.56 68.60 2.03 47.91 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.23 -12.75 9.88 84.04 0.83 -11.92 16 8 H 0.09 4.52 7.14 -2.91 -0.02 4.50 16 9 N -0.62 -31.50 3.35 -669.88 -2.24 -33.74 16 10 C 0.18 9.22 5.44 86.85 0.47 9.70 16 11 C -0.12 -4.53 6.54 31.63 0.21 -4.32 16 12 C -0.11 -3.97 2.86 -9.98 -0.03 -3.99 16 13 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 14 C 0.13 4.09 5.97 85.90 0.51 4.60 16 15 N -0.60 -17.73 2.99 -818.37 -2.45 -20.18 16 16 C 0.56 17.64 7.37 86.73 0.64 18.28 16 17 O -0.58 -22.12 16.13 -3.95 -0.06 -22.19 16 18 C -0.18 -4.65 5.29 -20.09 -0.11 -4.76 16 19 C -0.07 -1.56 9.52 22.30 0.21 -1.35 16 20 C -0.13 -2.36 10.00 22.09 0.22 -2.14 16 21 C 0.10 1.79 7.27 39.19 0.28 2.07 16 22 N -0.58 -5.90 6.05 -187.48 -1.13 -7.03 16 23 H 0.43 1.53 8.96 -92.71 -0.83 0.70 16 24 C 0.06 0.56 11.81 82.98 0.98 1.54 16 25 C -0.22 -3.07 11.09 23.52 0.26 -2.81 16 26 C -0.14 -2.78 6.36 -20.21 -0.13 -2.90 16 27 C -0.04 -0.80 7.39 22.74 0.17 -0.63 16 28 C 0.11 2.77 4.67 87.25 0.41 3.18 16 29 C -0.12 -4.13 5.52 31.00 0.17 -3.96 16 30 C 0.16 6.26 2.56 45.51 0.12 6.38 16 31 H 0.03 1.07 7.92 -2.39 -0.02 1.05 16 32 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.01 0.61 7.55 -2.39 -0.02 0.60 16 34 H 0.01 0.42 7.50 -2.38 -0.02 0.40 16 35 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.08 2.72 8.12 -2.39 -0.02 2.70 16 37 H 0.09 2.77 6.98 -2.38 -0.02 2.76 16 38 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 39 H 0.13 3.07 7.96 -2.91 -0.02 3.04 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.21 0.02 8.06 -2.91 -0.02 -0.01 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.15 2.81 5.63 -2.91 -0.02 2.79 16 44 H 0.09 1.98 7.74 -2.39 -0.02 1.96 16 45 H 0.11 2.54 4.53 -2.39 -0.01 2.53 16 46 H 0.05 1.86 8.11 -2.39 -0.02 1.84 16 47 H 0.08 2.58 7.60 -2.39 -0.02 2.56 16 Total: -1.00 -77.25 367.47 2.22 -75.03 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.17 Total: 14.88 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 5.69 Total: 3.42 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -5.60 Total: -119.06 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -77.25 2.22 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036804684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.778 kcal (2) G-P(sol) polarization free energy of solvation -77.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds