Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48502 * 109.47491 * 239.99967 * 3 2 1 5 5 H 1.48503 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47188 * 119.99731 * 3 2 1 7 7 C 1.38808 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00314 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.47659 * 126.19507 * 359.97257 * 9 7 2 11 11 C 1.54644 * 106.93780 * 178.36919 * 10 9 7 12 12 C 1.56265 * 102.20612 * 335.91923 * 11 10 9 13 13 H 1.09000 * 112.61147 * 158.27129 * 12 11 10 14 14 C 1.51865 * 106.81446 * 282.54924 * 12 11 10 15 15 N 1.43528 * 116.04252 * 130.06632 * 14 12 11 16 16 C 1.34780 * 115.76121 * 180.58182 * 15 14 12 17 17 O 1.21588 * 120.00092 * 354.53986 * 16 15 14 18 18 C 1.47507 * 119.99660 * 174.54335 * 16 15 14 19 19 C 1.39352 * 120.20391 * 305.22910 * 18 16 15 20 20 C 1.38321 * 120.49471 * 180.02562 * 19 18 16 21 21 C 1.37916 * 120.59151 * 359.97438 * 20 19 18 22 22 C 1.39542 * 119.98832 * 0.02562 * 21 20 19 23 23 C 1.46566 * 133.95174 * 179.97438 * 22 21 20 24 24 C 1.34208 * 106.89234 * 180.02562 * 23 22 21 25 25 N 1.36900 * 109.88143 * 359.97438 * 24 23 22 26 26 H 0.97006 * 125.01338 * 180.02562 * 25 24 23 27 27 C 1.37125 * 109.97429 * 359.76601 * 25 24 23 28 28 C 1.44217 * 128.47446 * 0.55940 * 15 14 12 29 29 C 1.51857 * 112.74655 * 6.21027 * 28 15 14 30 30 C 1.46661 * 126.20203 * 180.02562 * 9 7 2 31 31 H 1.08996 * 108.98691 * 90.74284 * 30 9 7 32 32 H 0.97000 * 119.99937 * 0.02562 * 1 2 3 33 33 H 1.08992 * 109.96881 * 58.99450 * 10 9 7 34 34 H 1.09002 * 109.99781 * 297.75508 * 10 9 7 35 35 H 1.09004 * 110.85454 * 217.73596 * 11 10 9 36 36 H 1.09002 * 110.85648 * 94.09741 * 11 10 9 37 37 H 1.09000 * 108.17110 * 251.76893 * 14 12 11 38 38 H 1.08993 * 108.17208 * 8.35657 * 14 12 11 39 39 H 1.07993 * 119.75600 * 0.02562 * 19 18 16 40 40 H 1.08001 * 119.70680 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.00434 * 179.97438 * 21 20 19 42 42 H 1.08001 * 126.55272 * 359.97438 * 23 22 21 43 43 H 1.07997 * 125.05899 * 180.02562 * 24 23 22 44 44 H 1.08994 * 108.83256 * 245.36539 * 28 15 14 45 45 H 1.09001 * 108.82445 * 127.04506 * 28 15 14 46 46 H 1.09004 * 108.99688 * 203.59611 * 29 28 15 47 47 H 1.09001 * 109.00387 * 84.83537 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1424 -2.5475 0.0006 11 6 -0.4306 -4.0662 -0.0415 12 6 0.8759 -4.6328 -0.6851 13 1 1.0293 -5.6885 -0.4617 14 6 0.7876 -4.3549 -2.1755 15 7 1.9351 -3.7293 -2.7688 16 6 1.8459 -3.4742 -4.0893 17 8 0.8806 -3.8609 -4.7194 18 6 2.9195 -2.7260 -4.7700 19 6 3.3094 -1.4741 -4.2981 20 6 4.3151 -0.7670 -4.9321 21 6 4.9485 -1.2888 -6.0405 22 6 4.5760 -2.5405 -6.5321 23 6 5.0262 -3.3675 -7.6553 24 6 4.2890 -4.4887 -7.6341 25 7 3.4056 -4.4455 -6.5891 26 1 2.7680 -5.1430 -6.3700 27 6 3.5589 -3.2732 -5.8944 28 6 3.1707 -3.3375 -2.1368 29 6 3.2588 -3.7890 -0.6895 30 6 1.9175 -3.7299 0.0016 31 1 2.0476 -4.0593 1.0324 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5694 -2.0631 -0.8774 34 1 -0.5644 -2.1135 0.9070 35 1 -1.2963 -4.2797 -0.6686 36 1 -0.5713 -4.4626 0.9641 37 1 0.6135 -5.3011 -2.6879 38 1 -0.0772 -3.7153 -2.3514 39 1 2.8228 -1.0528 -3.4310 40 1 4.6068 0.2024 -4.5558 41 1 5.7323 -0.7284 -6.5284 42 1 5.8022 -3.1212 -8.3649 43 1 4.3798 -5.3042 -8.3363 44 1 3.2551 -2.2514 -2.1722 45 1 4.0026 -3.7712 -2.6917 46 1 3.9598 -3.1446 -0.1589 47 1 3.6286 -4.8139 -0.6593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036825032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = 66.635707 kcal Electronic energy + Delta-G solvation = -30907.474696 eV Core-core repulsion = 27056.596465 eV Total energy + Delta-G solvation = -3850.878230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38249 -40.16076 -38.16033 -36.65013 -34.99969 -33.00617 -31.92105 -31.85457 -29.71304 -29.26284 -28.78570 -27.64719 -25.30577 -24.29101 -22.97513 -22.67310 -21.67313 -21.02829 -20.10472 -19.70343 -18.13671 -17.53617 -16.94780 -16.41446 -16.11749 -15.77657 -15.50990 -14.87956 -14.78409 -14.44178 -14.25219 -14.00099 -13.86322 -13.62059 -13.17990 -13.13956 -12.85292 -12.63877 -12.38089 -12.10179 -11.73730 -11.65471 -11.44906 -11.35979 -11.30442 -11.15482 -10.92081 -10.73255 -10.71386 -10.20976 -9.96026 -9.85421 -9.76123 -9.68642 -9.60935 -9.37686 -8.62279 -8.18439 -8.04133 -7.66311 -6.84421 -5.72568 -3.05355 0.96428 1.72550 2.58417 3.03749 3.17467 3.36942 3.42003 3.44658 3.48465 3.98461 4.46261 4.68279 4.75246 5.00645 5.08670 5.16221 5.23193 5.28954 5.30123 5.44226 5.47500 5.53012 5.54955 5.56410 5.72802 5.83405 5.89391 5.94373 5.98394 6.08000 6.11918 6.24426 6.30069 6.33095 6.45964 6.47676 6.50000 6.63066 6.68295 6.72101 6.73288 6.75196 6.86798 7.15807 7.19496 7.49533 7.52965 7.60305 7.73773 7.79994 8.22349 8.51062 9.18212 9.80824 10.49288 11.39611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.004775 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.745817 B = 5862.397129 C = 7361.790562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.081 0.919 14 C 0.145 3.855 15 N -0.566 5.566 16 C 0.547 3.453 17 O -0.551 6.551 18 C -0.134 4.134 19 C -0.055 4.055 20 C -0.149 4.149 21 C -0.056 4.056 22 C -0.120 4.120 23 C -0.204 4.204 24 C 0.047 3.953 25 N -0.589 5.589 26 H 0.418 0.582 27 C 0.137 3.863 28 C 0.123 3.877 29 C -0.124 4.124 30 C 0.170 3.830 31 H 0.025 0.975 32 H 0.252 0.748 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.169 0.831 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -9.443 -9.979 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.099 0.901 14 C 0.023 3.977 15 N -0.295 5.295 16 C 0.335 3.665 17 O -0.431 6.431 18 C -0.140 4.140 19 C -0.075 4.075 20 C -0.169 4.169 21 C -0.075 4.075 22 C -0.124 4.124 23 C -0.229 4.229 24 C -0.079 4.079 25 N -0.191 5.191 26 H 0.255 0.745 27 C 0.027 3.973 28 C 0.000 4.000 29 C -0.163 4.163 30 C 0.062 3.938 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.186 0.814 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.624 -9.527 -10.198 16.406 hybrid contribution 0.103 0.669 0.212 0.709 sum 8.727 -8.858 -9.987 15.949 Atomic orbital electron populations 1.69931 1.04863 1.25095 1.56583 1.24749 0.95576 0.97415 1.02355 0.86340 0.78590 0.83752 0.77957 1.21011 1.21691 1.21235 1.18860 0.90193 0.82130 1.44084 0.90494 1.44345 1.01381 0.99160 1.86766 1.21298 0.84338 0.88156 1.00931 1.23333 0.95630 0.99823 0.99346 1.22447 0.98639 0.98676 0.93566 0.90088 1.20289 0.87571 0.96712 0.93163 1.46251 1.16442 1.58783 1.08024 1.18410 0.86079 0.79573 0.82422 1.90731 1.33420 1.53072 1.65889 1.18824 1.00562 0.97429 0.97215 1.21283 0.95232 0.92219 0.98716 1.20863 0.98086 1.00820 0.97082 1.20627 0.98428 0.93193 0.95249 1.19138 0.99266 0.95886 0.98121 1.21648 1.05046 0.95044 1.01183 1.21818 0.93184 1.00360 0.92582 1.41750 1.34128 1.17674 1.25550 0.74517 1.17922 0.97616 0.87597 0.94130 1.20878 0.83846 1.01483 0.93756 1.21249 0.99744 1.00491 0.94790 1.20233 0.90594 0.87447 0.95507 0.95769 0.93731 0.93532 0.93981 0.91973 0.92230 0.93393 0.91488 0.83898 0.85318 0.85868 0.83616 0.81373 0.90076 0.93043 0.90457 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.41 55.49 0.58 -25.57 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 3 Si 0.90 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.22 -5.70 8.84 -15.06 -0.13 -5.84 16 8 H 0.08 1.86 6.89 -52.48 -0.36 1.50 16 9 N -0.59 -13.83 3.04 -164.16 -0.50 -14.33 16 10 C 0.18 4.15 4.82 -2.54 -0.01 4.14 16 11 C -0.14 -2.60 6.14 -24.11 -0.15 -2.75 16 12 C -0.11 -1.94 3.80 -88.92 -0.34 -2.28 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 14 C 0.15 2.67 4.61 -6.19 -0.03 2.64 16 15 N -0.57 -10.41 3.19 -180.43 -0.58 -10.98 16 16 C 0.55 10.47 6.98 -12.48 -0.09 10.39 16 17 O -0.55 -11.80 16.67 5.29 0.09 -11.71 16 18 C -0.13 -2.31 4.56 -104.87 -0.48 -2.79 16 19 C -0.06 -0.92 7.96 -39.14 -0.31 -1.23 16 20 C -0.15 -2.11 10.00 -39.67 -0.40 -2.50 16 21 C -0.06 -0.73 10.09 -39.21 -0.40 -1.12 16 22 C -0.12 -1.67 6.37 -105.15 -0.67 -2.34 16 23 C -0.20 -2.28 11.09 -37.65 -0.42 -2.70 16 24 C 0.05 0.48 11.82 -16.71 -0.20 0.28 16 25 N -0.59 -7.59 6.04 -10.45 -0.06 -7.65 16 26 H 0.42 5.01 8.96 -40.82 -0.37 4.65 16 27 C 0.14 2.12 6.99 -83.76 -0.59 1.53 16 28 C 0.12 2.10 4.55 -5.84 -0.03 2.07 16 29 C -0.12 -2.06 5.10 -28.31 -0.14 -2.20 16 30 C 0.17 3.25 2.93 -68.32 -0.20 3.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.05 1.24 7.13 -51.93 -0.37 0.87 16 34 H 0.04 1.10 7.58 -51.93 -0.39 0.70 16 35 H 0.06 1.05 7.81 -51.93 -0.41 0.65 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.83 7.97 -51.93 -0.41 0.41 16 38 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 39 H 0.14 2.63 6.76 -52.49 -0.36 2.28 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.08 1.52 4.76 -51.93 -0.25 1.27 16 45 H 0.05 0.79 7.66 -51.93 -0.40 0.40 16 46 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -31.46 365.02 -11.22 -42.68 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.56 Total: 7.76 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -4.67 Total: -1.86 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.56 Total: -58.53 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.46 -11.22 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036825032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.318 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds