Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48508 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47462 * 299.99889 * 3 2 1 6 6 H 1.48501 * 109.47222 * 60.00228 * 3 2 1 7 7 C 1.38817 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99960 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.48259 * 126.39320 * 359.97438 * 9 7 2 11 11 C 1.55293 * 106.98950 * 184.93688 * 10 9 7 12 12 C 1.53732 * 101.87926 * 22.48412 * 11 10 9 13 13 H 1.09002 * 111.30457 * 78.93710 * 12 11 10 14 14 C 1.52233 * 114.74966 * 207.21783 * 12 11 10 15 15 N 1.48918 * 105.76439 * 170.11057 * 14 12 11 16 16 C 1.34781 * 119.82133 * 127.76338 * 15 14 12 17 17 O 1.21593 * 120.00083 * 353.81294 * 16 15 14 18 18 C 1.47506 * 120.00243 * 173.81979 * 16 15 14 19 19 C 1.39347 * 120.20237 * 306.30106 * 18 16 15 20 20 C 1.38327 * 120.49150 * 179.97438 * 19 18 16 21 21 C 1.37913 * 120.59225 * 0.02562 * 20 19 18 22 22 C 1.39536 * 119.99076 * 359.97438 * 21 20 19 23 23 C 1.46564 * 133.95719 * 180.02562 * 22 21 20 24 24 C 1.34224 * 106.89026 * 179.19917 * 23 22 21 25 25 N 1.36903 * 109.88032 * 0.68852 * 24 23 22 26 26 H 0.96991 * 125.01885 * 179.41629 * 25 24 23 27 27 C 1.37121 * 109.96513 * 359.39199 * 25 24 23 28 28 C 1.46597 * 120.49577 * 307.41953 * 15 14 12 29 29 C 1.53953 * 110.57362 * 48.14378 * 28 15 14 30 30 C 1.45462 * 126.40372 * 179.97438 * 9 7 2 31 31 H 1.08997 * 109.27438 * 266.18582 * 30 9 7 32 32 H 0.96999 * 119.99887 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.95796 * 65.59766 * 10 9 7 34 34 H 1.09003 * 109.93280 * 304.25665 * 10 9 7 35 35 H 1.09006 * 110.95174 * 264.32367 * 11 10 9 36 36 H 1.09002 * 110.95529 * 140.64619 * 11 10 9 37 37 H 1.08994 * 110.07466 * 288.79754 * 14 12 11 38 38 H 1.09009 * 110.06825 * 50.37612 * 14 12 11 39 39 H 1.07999 * 119.75484 * 0.02562 * 19 18 16 40 40 H 1.08006 * 119.70041 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.99982 * 179.97438 * 21 20 19 42 42 H 1.08001 * 126.55805 * 359.97438 * 23 22 21 43 43 H 1.08000 * 125.06119 * 180.08119 * 24 23 22 44 44 H 1.08994 * 109.25582 * 287.86087 * 28 15 14 45 45 H 1.09004 * 109.25646 * 168.42247 * 28 15 14 46 46 H 1.09004 * 109.88257 * 189.49072 * 29 28 15 47 47 H 1.08992 * 109.94819 * 68.44066 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1478 -2.5531 0.0005 11 6 -0.4339 -4.0741 0.1279 12 6 0.8689 -4.5893 0.7608 13 1 0.8932 -4.3927 1.8327 14 6 1.2011 -6.0406 0.4435 15 7 2.5902 -6.2546 0.9358 16 6 2.8578 -7.2873 1.7595 17 8 1.9504 -7.9736 2.1887 18 6 4.2514 -7.5850 2.1405 19 6 5.2227 -7.7683 1.1584 20 6 6.5314 -8.0472 1.5089 21 6 6.8964 -8.1488 2.8350 22 6 5.9419 -7.9694 3.8369 23 6 5.9850 -8.0061 5.3014 24 6 4.7434 -7.7378 5.7350 25 7 3.9082 -7.5479 4.6669 26 1 2.9609 -7.3496 4.7296 27 6 4.6089 -7.6789 3.4956 28 6 3.6719 -5.3544 0.5252 29 6 3.2452 -3.8846 0.6919 30 6 1.9078 -3.7211 -0.0016 31 1 1.9883 -4.0777 -1.0284 32 1 -0.4850 0.8400 0.0004 33 1 -0.5654 -2.1734 -0.9320 34 1 -0.5807 -2.0216 0.8481 35 1 -0.5958 -4.5237 -0.8519 36 1 -1.2851 -4.2571 0.7838 37 1 0.5147 -6.7050 0.9685 38 1 1.1407 -6.2119 -0.6313 39 1 4.9519 -7.6913 0.1157 40 1 7.2741 -8.1866 0.7372 41 1 7.9209 -8.3673 3.0979 42 1 6.8528 -8.1987 5.9148 43 1 4.4452 -7.6894 6.7719 44 1 3.9177 -5.5411 -0.5201 45 1 4.5514 -5.5452 1.1403 46 1 3.9842 -3.2294 0.2306 47 1 3.1460 -3.6439 1.7503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036825033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = 60.293621 kcal Electronic energy + Delta-G solvation = -29773.618665 eV Core-core repulsion = 25922.465421 eV Total energy + Delta-G solvation = -3851.153244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55940 -40.04397 -38.25303 -36.90693 -35.32288 -32.87329 -32.10153 -31.55759 -29.96906 -29.45308 -28.92590 -27.97521 -25.15393 -24.27288 -22.84534 -22.43680 -21.88306 -21.15267 -20.15404 -19.85257 -19.24017 -17.84375 -17.23371 -16.43863 -16.18830 -15.83629 -15.25337 -15.16455 -14.88028 -14.53211 -14.34945 -14.14755 -13.91285 -13.68383 -13.36435 -13.07309 -13.00919 -12.86148 -12.60488 -12.43950 -11.94714 -11.82259 -11.66565 -11.55436 -11.48532 -11.39057 -10.86114 -10.81329 -10.72224 -10.18730 -10.11994 -9.92848 -9.92409 -9.68405 -9.63340 -9.46612 -8.65140 -8.56082 -8.42135 -7.90566 -6.86090 -5.73896 -3.07061 0.68831 1.45056 2.38956 2.73846 2.99707 3.03722 3.37642 3.43095 3.45563 3.70327 4.38388 4.47281 4.55011 4.79652 4.82382 5.00787 5.05399 5.10837 5.17964 5.26104 5.33228 5.35470 5.50383 5.56092 5.59718 5.61441 5.72709 5.75150 5.78898 5.87304 5.99117 6.12344 6.15359 6.17056 6.21716 6.30613 6.34557 6.44759 6.49090 6.53244 6.58853 6.62443 6.80243 6.92372 7.04340 7.31182 7.45265 7.53334 7.59084 7.78732 8.14333 8.21765 9.17007 9.80703 10.48664 11.38730 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003097 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.196398 B = 9038.905108 C = 9679.479413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.078 0.922 14 C 0.127 3.873 15 N -0.600 5.600 16 C 0.558 3.442 17 O -0.549 6.549 18 C -0.135 4.135 19 C -0.064 4.064 20 C -0.153 4.153 21 C -0.052 4.052 22 C -0.116 4.116 23 C -0.205 4.205 24 C 0.053 3.947 25 N -0.587 5.587 26 H 0.420 0.580 27 C 0.139 3.861 28 C 0.108 3.892 29 C -0.128 4.128 30 C 0.168 3.832 31 H 0.021 0.979 32 H 0.251 0.749 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -17.163 6.171 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.097 0.903 14 C 0.006 3.994 15 N -0.332 5.332 16 C 0.346 3.654 17 O -0.429 6.429 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.172 4.172 21 C -0.071 4.071 22 C -0.120 4.120 23 C -0.230 4.230 24 C -0.073 4.073 25 N -0.188 5.188 26 H 0.258 0.742 27 C 0.029 3.971 28 C -0.015 4.015 29 C -0.167 4.167 30 C 0.059 3.941 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.189 0.811 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.413 -17.210 6.418 21.114 hybrid contribution -0.002 1.148 0.031 1.149 sum 10.411 -16.061 6.449 20.198 Atomic orbital electron populations 1.69949 1.04896 1.24917 1.57110 1.24793 0.95678 0.97638 1.02348 0.86083 0.78737 0.83944 0.77240 1.20504 1.21766 1.21822 1.19045 0.90389 0.82297 1.43597 0.90314 1.44248 1.01655 0.99494 1.86601 1.21546 0.83955 0.88240 1.00957 1.22722 0.95737 0.99730 0.99324 1.22627 0.97900 0.93262 1.00626 0.90337 1.21867 0.81204 0.97242 0.99100 1.48579 1.10302 1.27299 1.46972 1.18381 0.88254 0.80356 0.78414 1.90760 1.46929 1.50296 1.54874 1.18818 0.94134 1.10473 0.90656 1.20994 0.91994 0.97128 0.98206 1.20791 0.95947 1.04511 0.95999 1.20654 0.98306 0.96653 0.91485 1.19183 0.92328 1.06642 0.93877 1.21688 0.97390 1.11857 0.92041 1.21915 0.90366 1.02646 0.92380 1.41813 1.11607 1.61404 1.04011 0.74211 1.17917 0.91675 1.01195 0.86348 1.21923 0.89171 0.90174 1.00235 1.21891 0.99415 0.93525 1.01916 1.20658 0.91105 0.87212 0.95096 0.96169 0.93816 0.94324 0.92760 0.92299 0.92093 0.89258 0.90869 0.85151 0.85316 0.85654 0.83377 0.81090 0.91604 0.89760 0.90455 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.44 55.49 0.58 -26.21 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.07 9.86 -15.06 -0.15 -6.22 16 8 H 0.08 2.04 7.18 -52.49 -0.38 1.67 16 9 N -0.60 -14.71 3.35 -162.99 -0.55 -15.25 16 10 C 0.18 4.23 5.45 -1.86 -0.01 4.22 16 11 C -0.14 -2.50 6.53 -25.13 -0.16 -2.67 16 12 C -0.12 -2.19 2.84 -89.36 -0.25 -2.44 16 13 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 14 C 0.13 1.93 6.05 -3.09 -0.02 1.92 16 15 N -0.60 -8.82 3.02 -172.73 -0.52 -9.34 16 16 C 0.56 8.57 7.15 -12.48 -0.09 8.48 16 17 O -0.55 -9.89 16.47 5.28 0.09 -9.81 16 18 C -0.13 -1.81 4.52 -104.87 -0.47 -2.29 16 19 C -0.06 -0.70 7.82 -39.14 -0.31 -1.01 16 20 C -0.15 -1.45 10.00 -39.67 -0.40 -1.85 16 21 C -0.05 -0.51 10.09 -39.22 -0.40 -0.91 16 22 C -0.12 -1.35 6.37 -105.15 -0.67 -2.02 16 23 C -0.20 -1.98 11.09 -37.64 -0.42 -2.40 16 24 C 0.05 0.49 11.82 -16.70 -0.20 0.29 16 25 N -0.59 -6.80 6.04 -10.45 -0.06 -6.87 16 26 H 0.42 4.69 8.96 -40.82 -0.37 4.33 16 27 C 0.14 1.83 6.98 -83.76 -0.59 1.24 16 28 C 0.11 1.47 5.28 -3.49 -0.02 1.45 16 29 C -0.13 -2.19 5.45 -26.98 -0.15 -2.33 16 30 C 0.17 3.30 2.57 -67.96 -0.17 3.13 16 31 H 0.02 0.42 7.93 -51.93 -0.41 0.00 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 34 H 0.05 1.45 7.22 -51.93 -0.37 1.07 16 35 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 38 H 0.07 1.03 8.08 -51.92 -0.42 0.61 16 39 H 0.13 1.25 7.70 -52.49 -0.40 0.84 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.06 5.52 -51.93 -0.29 0.77 16 46 H 0.08 1.33 7.59 -51.93 -0.39 0.93 16 47 H 0.07 1.22 8.11 -51.93 -0.42 0.79 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.85 371.68 -11.19 -44.03 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.74 Total: 4.77 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -4.56 Total: -3.74 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.55 Total: -57.67 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.85 -11.19 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036825033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.327 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds