Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48507 * 109.46905 * 274.99038 * 3 2 1 5 5 H 1.48500 * 109.47324 * 34.98429 * 3 2 1 6 6 H 1.48495 * 109.47403 * 154.98884 * 3 2 1 7 7 C 1.38813 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99838 * 174.10160 * 7 2 1 9 9 N 1.36942 * 120.00251 * 354.10552 * 7 2 1 10 10 C 1.48223 * 126.39598 * 7.10632 * 9 7 2 11 11 C 1.55293 * 107.00714 * 175.08094 * 10 9 7 12 12 C 1.53746 * 101.87441 * 337.56388 * 11 10 9 13 13 H 1.08993 * 111.30620 * 280.14040 * 12 11 10 14 14 C 1.52243 * 114.73801 * 152.74434 * 12 11 10 15 15 N 1.47727 * 106.36095 * 190.42177 * 14 12 11 16 16 C 1.34772 * 119.68042 * 232.08008 * 15 14 12 17 17 O 1.21651 * 120.00096 * 358.97645 * 16 15 14 18 18 C 1.47059 * 119.99650 * 178.97560 * 16 15 14 19 19 C 1.35868 * 125.42806 * 205.71962 * 18 16 15 20 20 C 1.41593 * 107.72561 * 180.02562 * 19 18 16 21 21 C 1.40102 * 133.37947 * 180.02562 * 20 19 18 22 22 C 1.36433 * 119.82933 * 179.97438 * 21 20 19 23 23 C 1.38943 * 120.61606 * 359.97017 * 22 21 20 24 24 C 1.37669 * 120.64959 * 0.02762 * 23 22 21 25 25 C 1.39222 * 119.80725 * 359.97438 * 24 23 22 26 26 N 1.37490 * 133.18044 * 180.37550 * 25 24 23 27 27 H 0.97000 * 125.60139 * 359.92862 * 26 25 24 28 28 C 1.46591 * 120.63192 * 52.05850 * 15 14 12 29 29 C 1.53956 * 110.57844 * 312.17558 * 28 15 14 30 30 C 1.45462 * 126.40881 * 187.16880 * 9 7 2 31 31 H 1.09003 * 108.76822 * 93.99796 * 30 9 7 32 32 H 0.97002 * 119.99807 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.91632 * 55.75581 * 10 9 7 34 34 H 1.08998 * 109.95536 * 294.43245 * 10 9 7 35 35 H 1.09002 * 110.95200 * 219.41026 * 11 10 9 36 36 H 1.08999 * 110.95426 * 95.72128 * 11 10 9 37 37 H 1.08997 * 110.06547 * 309.62927 * 14 12 11 38 38 H 1.08994 * 110.07173 * 71.20986 * 14 12 11 39 39 H 1.08006 * 126.14023 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.08124 * 359.97438 * 21 20 19 41 41 H 1.08003 * 119.69232 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.67560 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.09271 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.25894 * 72.45637 * 28 15 14 45 45 H 1.09000 * 109.25563 * 191.88562 * 28 15 14 46 46 H 1.09001 * 109.88184 * 170.51541 * 29 28 15 47 47 H 1.09003 * 109.87891 * 291.59073 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0859 -1.2047 -0.0956 9 7 1.3310 -2.3849 0.1229 10 6 -0.1410 -2.5587 0.1151 11 6 -0.4184 -4.0861 0.1561 12 6 0.8983 -4.6615 -0.3907 13 1 0.9349 -4.6023 -1.4784 14 6 1.2310 -6.0651 0.0962 15 7 2.6225 -6.3317 -0.3223 16 6 2.9091 -7.4550 -1.0096 17 8 2.0272 -8.2526 -1.2665 18 6 4.2879 -7.7164 -1.4492 19 6 4.6434 -8.4840 -2.5124 20 6 6.0570 -8.4802 -2.5933 21 6 6.9725 -9.0821 -3.4665 22 6 8.3109 -8.8884 -3.2857 23 6 8.7769 -8.0980 -2.2423 24 6 7.8973 -7.4959 -1.3710 25 6 6.5269 -7.6785 -1.5347 26 7 5.4277 -7.2159 -0.8505 27 1 5.4493 -6.6359 -0.0733 28 6 3.6944 -5.3860 0.0026 29 6 3.2726 -3.9480 -0.3500 30 6 1.9190 -3.7054 0.2859 31 1 1.9748 -3.9355 1.3499 32 1 -0.4850 0.8401 0.0004 33 1 -0.5608 -2.1293 -0.7945 34 1 -0.5769 -2.0784 0.9911 35 1 -1.2562 -4.3476 -0.4902 36 1 -0.5965 -4.4226 1.1774 37 1 1.1513 -6.1129 1.1822 38 1 0.5575 -6.7893 -0.3618 39 1 3.9689 -9.0037 -3.1768 40 1 6.6197 -9.6977 -4.2806 41 1 9.0147 -9.3537 -3.9599 42 1 9.8396 -7.9546 -2.1135 43 1 8.2694 -6.8837 -0.5628 44 1 3.9148 -5.4447 1.0686 45 1 4.5884 -5.6476 -0.5635 46 1 4.0007 -3.2403 0.0465 47 1 3.1989 -3.8382 -1.4320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036888876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 79.594522 kcal Electronic energy + Delta-G solvation = -29404.774752 eV Core-core repulsion = 25554.458458 eV Total energy + Delta-G solvation = -3850.316294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.97859 -40.06610 -38.32788 -37.02784 -35.57371 -32.85855 -32.37806 -31.71669 -30.35864 -29.55366 -29.03360 -28.11204 -25.29594 -24.41318 -23.17509 -22.57837 -22.00776 -21.18238 -20.29770 -19.95224 -19.41290 -17.70866 -17.59599 -16.48645 -16.14679 -15.94835 -15.47946 -15.22456 -14.75812 -14.46858 -14.44245 -14.29674 -14.02733 -13.89055 -13.54582 -13.24643 -13.17922 -12.98105 -12.68850 -12.54457 -11.97394 -11.86475 -11.72569 -11.55148 -11.48833 -11.15386 -10.89887 -10.87991 -10.80066 -10.31098 -10.18575 -10.09902 -10.03645 -9.91081 -9.69799 -9.56769 -8.74673 -8.66098 -8.44770 -7.98536 -6.89268 -5.79057 -3.11815 0.59752 1.38851 1.95681 2.62479 2.81289 3.23525 3.35024 3.40326 3.42492 3.68215 4.25349 4.42933 4.45143 4.71533 4.77440 4.86809 4.93234 5.04854 5.08649 5.17814 5.23456 5.25925 5.35164 5.45469 5.47293 5.51188 5.69250 5.73147 5.77942 5.80105 5.90848 6.02374 6.05433 6.12486 6.16076 6.23445 6.31108 6.35935 6.40856 6.46289 6.51850 6.54836 6.70647 6.84547 6.96895 7.10935 7.26581 7.49407 7.55470 7.74502 7.98431 8.17716 9.12451 9.76257 10.44593 11.34120 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.002929 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.775235 B = 9557.335891 C =11088.414111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.127 3.873 15 N -0.600 5.600 16 C 0.579 3.421 17 O -0.527 6.527 18 C 0.028 3.972 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.062 4.062 22 C -0.150 4.150 23 C -0.091 4.091 24 C -0.131 4.131 25 C 0.105 3.895 26 N -0.580 5.580 27 H 0.425 0.575 28 C 0.083 3.917 29 C -0.127 4.127 30 C 0.168 3.832 31 H 0.021 0.979 32 H 0.253 0.747 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.308 -17.004 -2.147 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.099 0.901 14 C 0.006 3.994 15 N -0.332 5.332 16 C 0.366 3.634 17 O -0.404 6.404 18 C -0.081 4.081 19 C -0.141 4.141 20 C -0.121 4.121 21 C -0.081 4.081 22 C -0.169 4.169 23 C -0.111 4.111 24 C -0.151 4.151 25 C -0.005 4.005 26 N -0.192 5.192 27 H 0.270 0.730 28 C -0.041 4.041 29 C -0.167 4.167 30 C 0.060 3.940 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.689 -17.044 -2.105 21.353 hybrid contribution 0.533 1.405 0.395 1.554 sum 13.222 -15.639 -1.710 20.551 Atomic orbital electron populations 1.69949 1.04949 1.25157 1.56475 1.24818 0.95667 0.97674 1.02052 0.86158 0.78697 0.83747 0.77502 1.21675 1.21614 1.20650 1.18970 0.90800 0.82383 1.43630 0.90455 1.44219 1.01633 1.00431 1.85590 1.21548 0.83958 0.88082 1.01119 1.22720 0.95573 0.99441 0.99716 1.22652 0.97990 0.93208 1.00682 0.90106 1.21713 0.80534 0.97651 0.99544 1.48257 1.10059 1.20280 1.54602 1.17333 0.86182 0.81767 0.78114 1.90828 1.46793 1.46413 1.56351 1.20154 0.86184 1.02942 0.98855 1.20872 0.93655 1.01188 0.98386 1.18222 0.93308 1.02536 0.98042 1.20410 0.92296 0.97828 0.97530 1.20631 0.95329 1.01486 0.99502 1.20870 0.99107 0.96646 0.94463 1.20089 0.89056 1.03926 1.02046 1.18445 0.88825 0.98603 0.94580 1.43043 1.03911 1.43617 1.28632 0.72973 1.22434 0.90017 0.90932 1.00692 1.21864 0.99704 0.93022 1.02066 1.20611 0.90826 0.87077 0.95509 0.96168 0.93684 0.93307 0.93790 0.91938 0.92226 0.90956 0.88840 0.82786 0.85787 0.85950 0.85619 0.85960 0.91199 0.89281 0.90289 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.49 55.49 0.58 -25.87 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.56 29.56 -169.99 -5.02 16.54 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -6.10 9.89 -15.06 -0.15 -6.25 16 8 H 0.08 1.96 7.18 -52.49 -0.38 1.59 16 9 N -0.59 -14.39 3.35 -163.05 -0.55 -14.94 16 10 C 0.18 4.16 5.44 -1.88 -0.01 4.15 16 11 C -0.14 -2.43 6.53 -25.13 -0.16 -2.60 16 12 C -0.12 -2.14 2.86 -89.37 -0.26 -2.40 16 13 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 14 C 0.13 1.86 5.96 -3.76 -0.02 1.84 16 15 N -0.60 -8.40 3.00 -173.89 -0.52 -8.92 16 16 C 0.58 8.60 7.61 -12.69 -0.10 8.50 16 17 O -0.53 -9.24 16.31 5.23 0.09 -9.16 16 18 C 0.03 0.36 6.35 -82.30 -0.52 -0.16 16 19 C -0.11 -1.43 10.63 -39.15 -0.42 -1.85 16 20 C -0.12 -1.35 6.16 -106.93 -0.66 -2.01 16 21 C -0.06 -0.59 10.06 -39.53 -0.40 -0.99 16 22 C -0.15 -1.24 9.96 -39.97 -0.40 -1.64 16 23 C -0.09 -0.74 10.01 -39.53 -0.40 -1.14 16 24 C -0.13 -1.19 10.08 -39.42 -0.40 -1.59 16 25 C 0.11 1.16 7.25 -83.97 -0.61 0.55 16 26 N -0.58 -6.28 4.81 -7.36 -0.04 -6.32 16 27 H 0.42 3.74 6.04 -40.82 -0.25 3.50 16 28 C 0.08 1.03 5.22 -3.49 -0.02 1.01 16 29 C -0.13 -2.04 5.45 -26.98 -0.15 -2.19 16 30 C 0.17 3.21 2.55 -67.99 -0.17 3.03 16 31 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.05 1.28 7.47 -51.93 -0.39 0.89 16 34 H 0.04 1.14 7.58 -51.93 -0.39 0.74 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 39 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.97 3.77 -52.20 -0.20 0.77 16 46 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 47 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -31.85 368.32 -11.39 -43.24 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.55 Total: 3.84 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -4.93 Total: -3.97 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.52 Total: -56.04 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.85 -11.39 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036888876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.839 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds