Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48507 * 109.46905 * 274.99038 * 3 2 1 5 5 H 1.48500 * 109.47324 * 34.98429 * 3 2 1 6 6 H 1.48495 * 109.47403 * 154.98884 * 3 2 1 7 7 C 1.38813 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99838 * 174.10160 * 7 2 1 9 9 N 1.36942 * 120.00251 * 354.10552 * 7 2 1 10 10 C 1.48223 * 126.39598 * 7.10632 * 9 7 2 11 11 C 1.55293 * 107.00714 * 175.08094 * 10 9 7 12 12 C 1.53746 * 101.87441 * 337.56388 * 11 10 9 13 13 H 1.08993 * 111.30620 * 280.14040 * 12 11 10 14 14 C 1.52243 * 114.73801 * 152.74434 * 12 11 10 15 15 N 1.47727 * 106.36095 * 190.42177 * 14 12 11 16 16 C 1.34772 * 119.68042 * 232.08008 * 15 14 12 17 17 O 1.21651 * 120.00096 * 358.97645 * 16 15 14 18 18 C 1.47059 * 119.99650 * 178.97560 * 16 15 14 19 19 C 1.35868 * 125.42806 * 205.71962 * 18 16 15 20 20 C 1.41593 * 107.72561 * 180.02562 * 19 18 16 21 21 C 1.40102 * 133.37947 * 180.02562 * 20 19 18 22 22 C 1.36433 * 119.82933 * 179.97438 * 21 20 19 23 23 C 1.38943 * 120.61606 * 359.97017 * 22 21 20 24 24 C 1.37669 * 120.64959 * 0.02762 * 23 22 21 25 25 C 1.39222 * 119.80725 * 359.97438 * 24 23 22 26 26 N 1.37490 * 133.18044 * 180.37550 * 25 24 23 27 27 H 0.97000 * 125.60139 * 359.92862 * 26 25 24 28 28 C 1.46591 * 120.63192 * 52.05850 * 15 14 12 29 29 C 1.53956 * 110.57844 * 312.17558 * 28 15 14 30 30 C 1.45462 * 126.40881 * 187.16880 * 9 7 2 31 31 H 1.09003 * 108.76822 * 93.99796 * 30 9 7 32 32 H 0.97002 * 119.99807 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.91632 * 55.75581 * 10 9 7 34 34 H 1.08998 * 109.95536 * 294.43245 * 10 9 7 35 35 H 1.09002 * 110.95200 * 219.41026 * 11 10 9 36 36 H 1.08999 * 110.95426 * 95.72128 * 11 10 9 37 37 H 1.08997 * 110.06547 * 309.62927 * 14 12 11 38 38 H 1.08994 * 110.07173 * 71.20986 * 14 12 11 39 39 H 1.08006 * 126.14023 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.08124 * 359.97438 * 21 20 19 41 41 H 1.08003 * 119.69232 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.67560 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.09271 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.25894 * 72.45637 * 28 15 14 45 45 H 1.09000 * 109.25563 * 191.88562 * 28 15 14 46 46 H 1.09001 * 109.88184 * 170.51541 * 29 28 15 47 47 H 1.09003 * 109.87891 * 291.59073 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0859 -1.2047 -0.0956 9 7 1.3310 -2.3849 0.1229 10 6 -0.1410 -2.5587 0.1151 11 6 -0.4184 -4.0861 0.1561 12 6 0.8983 -4.6615 -0.3907 13 1 0.9349 -4.6023 -1.4784 14 6 1.2310 -6.0651 0.0962 15 7 2.6225 -6.3317 -0.3223 16 6 2.9091 -7.4550 -1.0096 17 8 2.0272 -8.2526 -1.2665 18 6 4.2879 -7.7164 -1.4492 19 6 4.6434 -8.4840 -2.5124 20 6 6.0570 -8.4802 -2.5933 21 6 6.9725 -9.0821 -3.4665 22 6 8.3109 -8.8884 -3.2857 23 6 8.7769 -8.0980 -2.2423 24 6 7.8973 -7.4959 -1.3710 25 6 6.5269 -7.6785 -1.5347 26 7 5.4277 -7.2159 -0.8505 27 1 5.4493 -6.6359 -0.0733 28 6 3.6944 -5.3860 0.0026 29 6 3.2726 -3.9480 -0.3500 30 6 1.9190 -3.7054 0.2859 31 1 1.9748 -3.9355 1.3499 32 1 -0.4850 0.8401 0.0004 33 1 -0.5608 -2.1293 -0.7945 34 1 -0.5769 -2.0784 0.9911 35 1 -1.2562 -4.3476 -0.4902 36 1 -0.5965 -4.4226 1.1774 37 1 1.1513 -6.1129 1.1822 38 1 0.5575 -6.7893 -0.3618 39 1 3.9689 -9.0037 -3.1768 40 1 6.6197 -9.6977 -4.2806 41 1 9.0147 -9.3537 -3.9599 42 1 9.8396 -7.9546 -2.1135 43 1 8.2694 -6.8837 -0.5628 44 1 3.9148 -5.4447 1.0686 45 1 4.5884 -5.6476 -0.5635 46 1 4.0007 -3.2403 0.0465 47 1 3.1989 -3.8382 -1.4320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036888876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = 61.814326 kcal Electronic energy + Delta-G solvation = -29405.545759 eV Core-core repulsion = 25554.458458 eV Total energy + Delta-G solvation = -3851.087301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.85267 -41.24842 -39.70065 -37.80402 -36.95536 -34.60727 -33.23846 -33.09769 -31.71999 -30.68086 -30.00042 -29.45025 -26.84053 -25.83913 -24.27047 -23.84119 -22.85981 -22.09168 -21.88084 -21.26309 -20.65565 -18.88047 -18.51426 -18.11212 -17.22883 -16.97054 -16.86510 -16.47925 -16.10648 -15.78147 -15.56515 -15.32460 -15.14771 -14.93844 -14.75294 -14.54774 -14.30753 -14.11651 -13.92904 -13.84501 -13.37303 -13.20819 -13.14492 -12.70219 -12.63073 -12.59561 -12.46072 -12.14925 -12.03932 -11.83758 -11.80269 -11.65956 -11.54871 -11.26464 -11.02447 -10.88305 -10.70688 -9.91872 -9.22085 -8.87803 -8.76508 -7.86321 -5.19959 -0.22025 0.68276 1.06072 1.45375 1.46242 1.55314 1.61969 1.86138 2.23228 2.49337 2.97494 3.24462 3.33420 3.43929 3.64123 3.74216 3.81096 3.94332 4.06813 4.10361 4.11579 4.21470 4.28576 4.38409 4.38692 4.48896 4.56865 4.58776 4.62950 4.66862 4.74539 4.78226 4.84777 4.92897 4.98415 5.04819 5.13641 5.15500 5.32793 5.48561 5.49290 5.50921 5.56709 5.65044 5.67467 5.71585 5.73932 6.10860 6.17609 6.19148 6.37754 6.85476 7.07490 7.77721 8.46966 9.26450 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.002929 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.775235 B = 9557.335891 C =11088.414111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.231 4.231 8 H 0.088 0.912 9 N -0.615 5.615 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.111 4.111 13 H 0.061 0.939 14 C 0.135 3.865 15 N -0.600 5.600 16 C 0.581 3.419 17 O -0.561 6.561 18 C 0.008 3.992 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.074 4.074 22 C -0.150 4.150 23 C -0.086 4.086 24 C -0.141 4.141 25 C 0.096 3.904 26 N -0.573 5.573 27 H 0.433 0.567 28 C 0.092 3.908 29 C -0.121 4.121 30 C 0.158 3.842 31 H 0.029 0.971 32 H 0.245 0.755 33 H 0.009 0.991 34 H 0.011 0.989 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.699 -18.507 -1.695 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.360 4.360 8 H 0.105 0.895 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.159 4.159 12 C -0.131 4.131 13 H 0.079 0.921 14 C 0.013 3.987 15 N -0.331 5.331 16 C 0.370 3.630 17 O -0.440 6.440 18 C -0.101 4.101 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.093 4.093 22 C -0.168 4.168 23 C -0.106 4.106 24 C -0.161 4.161 25 C -0.014 4.014 26 N -0.186 5.186 27 H 0.280 0.720 28 C -0.031 4.031 29 C -0.160 4.160 30 C 0.052 3.948 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.171 0.829 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.100 0.900 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.130 -18.568 -1.638 24.650 hybrid contribution -0.405 1.807 0.182 1.861 sum 15.725 -16.761 -1.456 23.028 Atomic orbital electron populations 1.70172 1.06427 1.25160 1.58435 1.25647 0.96492 1.01020 1.03001 0.85141 0.78063 0.79577 0.77068 1.21850 1.22413 1.18819 1.19400 0.91492 0.83442 1.41702 0.89454 1.44505 1.02200 1.01872 1.85407 1.21315 0.83832 0.91539 0.97618 1.22587 0.96654 0.95124 1.01571 1.22476 0.96779 0.94546 0.99326 0.92066 1.21607 0.81105 0.95388 1.00576 1.48276 1.10082 1.20372 1.54372 1.17536 0.86664 0.81444 0.77404 1.90803 1.47997 1.47553 1.57607 1.19861 0.85857 1.04516 0.99859 1.21047 0.94567 1.00871 0.98319 1.18452 0.93050 1.03794 0.99283 1.20694 0.92797 0.98065 0.97754 1.21021 0.95201 1.00877 0.99736 1.21325 1.00559 0.95210 0.93475 1.20437 0.88214 1.04412 1.03035 1.18757 0.89585 0.98602 0.94452 1.42879 1.03258 1.43618 1.28802 0.72018 1.22489 0.89892 0.87988 1.02758 1.21767 0.98004 0.95695 1.00511 1.20863 0.92849 0.84931 0.96205 0.95391 0.94571 0.97298 0.97117 0.90406 0.90004 0.88947 0.88953 0.82884 0.84457 0.83361 0.82678 0.83838 0.88289 0.87488 0.90031 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.28 10.49 21.65 0.23 -57.05 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.97 45.05 29.56 68.60 2.03 47.08 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.23 -12.44 9.89 84.03 0.83 -11.61 16 8 H 0.09 4.40 7.18 -2.91 -0.02 4.38 16 9 N -0.62 -30.31 3.35 -669.77 -2.24 -32.56 16 10 C 0.18 8.88 5.44 86.84 0.47 9.35 16 11 C -0.12 -4.30 6.53 31.63 0.21 -4.09 16 12 C -0.11 -3.74 2.86 -9.98 -0.03 -3.77 16 13 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 14 C 0.13 3.72 5.96 85.89 0.51 4.23 16 15 N -0.60 -15.80 3.00 -822.30 -2.47 -18.26 16 16 C 0.58 16.76 7.61 86.56 0.66 17.42 16 17 O -0.56 -19.54 16.31 -4.19 -0.07 -19.61 16 18 C 0.01 0.21 6.35 39.91 0.25 0.46 16 19 C -0.12 -2.98 10.63 22.55 0.24 -2.74 16 20 C -0.14 -3.10 6.16 -21.36 -0.13 -3.23 16 21 C -0.07 -1.27 10.06 22.30 0.22 -1.05 16 22 C -0.15 -1.98 9.96 22.02 0.22 -1.76 16 23 C -0.09 -1.07 10.01 22.30 0.22 -0.85 16 24 C -0.14 -2.11 10.08 22.37 0.23 -1.89 16 25 C 0.10 1.91 7.25 39.13 0.28 2.20 16 26 N -0.57 -11.30 4.81 -177.19 -0.85 -12.15 16 27 H 0.43 6.47 6.04 -92.71 -0.56 5.91 16 28 C 0.09 2.05 5.22 86.68 0.45 2.50 16 29 C -0.12 -3.71 5.45 30.43 0.17 -3.55 16 30 C 0.16 5.92 2.55 45.51 0.12 6.04 16 31 H 0.03 1.05 7.94 -2.39 -0.02 1.03 16 32 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.01 0.49 7.47 -2.39 -0.02 0.47 16 34 H 0.01 0.58 7.58 -2.39 -0.02 0.56 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 37 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 38 H 0.09 2.64 7.00 -2.39 -0.02 2.62 16 39 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 40 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.11 2.06 3.77 -2.92 -0.01 2.05 16 46 H 0.08 2.47 7.64 -2.39 -0.02 2.45 16 47 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 Total: -1.00 -72.33 368.32 2.45 -69.88 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.43 Total: 18.41 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.39 Total: 4.27 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -5.34 Total: -120.02 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.07 Total: -19.61 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.33 2.45 -69.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036888876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.698 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds