Wall clock time and date at job start Sat Apr 11 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47109 * 240.00142 * 3 2 1 6 6 H 1.48497 * 109.47023 * 120.00276 * 3 2 1 7 7 C 1.38817 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99781 * 149.27323 * 7 2 1 9 9 N 1.36936 * 119.99804 * 329.27605 * 7 2 1 10 10 C 1.47763 * 125.96438 * 0.85296 * 9 7 2 11 11 C 1.55101 * 104.91352 * 201.58089 * 10 9 7 12 12 C 1.56119 * 101.08215 * 322.93486 * 11 10 9 13 13 H 1.08998 * 112.18550 * 157.73669 * 12 11 10 14 14 C 1.53104 * 106.64473 * 281.14893 * 12 11 10 15 15 N 1.46176 * 109.62805 * 159.76493 * 14 12 11 16 16 C 1.34768 * 120.96229 * 121.18710 * 15 14 12 17 17 O 1.21651 * 120.00225 * 352.12135 * 16 15 14 18 18 C 1.47064 * 120.00312 * 172.12367 * 16 15 14 19 19 C 1.35863 * 125.43685 * 151.39699 * 18 16 15 20 20 C 1.41587 * 107.72835 * 179.97438 * 19 18 16 21 21 C 1.40104 * 133.37600 * 179.97438 * 20 19 18 22 22 C 1.36428 * 119.82936 * 180.02562 * 21 20 19 23 23 C 1.38942 * 120.61796 * 359.97438 * 22 21 20 24 24 C 1.37675 * 120.64500 * 0.02562 * 23 22 21 25 25 C 1.39227 * 119.81053 * 0.02562 * 24 23 22 26 26 N 1.37476 * 133.18078 * 180.29313 * 25 24 23 27 27 H 0.97003 * 125.60694 * 359.97438 * 26 25 24 28 28 C 1.46535 * 118.05899 * 301.50141 * 15 14 12 29 29 C 1.51783 * 110.13288 * 53.46658 * 28 15 14 30 30 C 1.46260 * 125.95602 * 180.54352 * 9 7 2 31 31 H 1.09002 * 105.49877 * 70.59982 * 30 9 7 32 32 H 0.97001 * 120.00127 * 174.59248 * 1 2 3 33 33 H 1.08995 * 110.35239 * 320.44224 * 10 9 7 34 34 H 1.09002 * 110.35311 * 82.61849 * 10 9 7 35 35 H 1.08997 * 111.09753 * 80.89558 * 11 10 9 36 36 H 1.09005 * 111.09439 * 204.98449 * 11 10 9 37 37 H 1.08997 * 109.52825 * 279.94556 * 14 12 11 38 38 H 1.09004 * 109.53250 * 40.16431 * 14 12 11 39 39 H 1.08007 * 126.13205 * 359.94648 * 19 18 16 40 40 H 1.08002 * 120.08479 * 0.02562 * 21 20 19 41 41 H 1.08004 * 119.69602 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.68044 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.09398 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.35915 * 293.26227 * 28 15 14 45 45 H 1.09003 * 109.25016 * 173.59891 * 28 15 14 46 46 H 1.08994 * 108.36503 * 196.93367 * 29 28 15 47 47 H 1.08998 * 108.36294 * 79.82769 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 2.9765 -1.2677 -0.4785 9 7 1.4696 -2.3051 0.6049 10 6 0.1562 -2.3688 1.2790 11 6 0.2578 -3.5843 2.2370 12 6 1.1070 -4.5733 1.3780 13 1 1.6142 -5.3191 1.9900 14 6 0.1506 -5.2054 0.3632 15 7 0.9143 -5.7528 -0.7565 16 6 0.8396 -7.0606 -1.0733 17 8 0.2456 -7.8306 -0.3423 18 6 1.4761 -7.5571 -2.3026 19 6 1.9598 -8.8132 -2.4872 20 6 2.4875 -8.8834 -3.7992 21 6 3.1058 -9.9034 -4.5343 22 6 3.5191 -9.6639 -5.8122 23 6 3.3325 -8.4162 -6.3943 24 6 2.7275 -7.3978 -5.6925 25 6 2.2980 -7.6173 -4.3865 26 7 1.6727 -6.8220 -3.4556 27 1 1.4132 -5.8966 -3.5865 28 6 1.7689 -4.8395 -1.5200 29 6 2.7076 -4.0985 -0.5854 30 6 2.0888 -3.6273 0.6915 31 1 2.9202 -3.5146 1.3873 32 1 -0.4850 -0.8363 -0.0792 33 1 -0.0244 -1.4546 1.8443 34 1 -0.6376 -2.5251 0.5485 35 1 0.7781 -3.3167 3.1566 36 1 -0.7277 -3.9978 2.4520 37 1 -0.4144 -6.0042 0.8436 38 1 -0.5362 -4.4466 -0.0121 39 1 1.9448 -9.6143 -1.7630 40 1 3.2548 -10.8766 -4.0905 41 1 3.9952 -10.4518 -6.3771 42 1 3.6660 -8.2431 -7.4069 43 1 2.5866 -6.4315 -6.1538 44 1 1.1453 -4.1202 -2.0509 45 1 2.3535 -5.4120 -2.2401 46 1 3.1055 -3.2324 -1.1141 47 1 3.5400 -4.7582 -0.3406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036888877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:14 Heat of formation + Delta-G solvation = 69.348876 kcal Electronic energy + Delta-G solvation = -29739.556842 eV Core-core repulsion = 25888.796264 eV Total energy + Delta-G solvation = -3850.760578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.88200 -40.13167 -38.45732 -36.96142 -35.55186 -33.12018 -32.36042 -32.07501 -30.11095 -29.40312 -28.95442 -28.00560 -25.69467 -24.42411 -23.24676 -22.95430 -22.11399 -21.23696 -20.20191 -19.97109 -18.84797 -17.84111 -17.52688 -16.94339 -16.24801 -15.99316 -15.47768 -15.36820 -14.73484 -14.41483 -14.33660 -14.24501 -14.03840 -13.79828 -13.60905 -13.31266 -13.15907 -13.06807 -12.77676 -12.65475 -12.09505 -11.96286 -11.89870 -11.49193 -11.42729 -11.13630 -11.05571 -10.69638 -10.44402 -10.35395 -10.29617 -10.10421 -10.07514 -10.02482 -10.00307 -9.56127 -8.59097 -8.45182 -8.38898 -7.96734 -7.04638 -6.20371 -3.12770 0.62567 1.41330 1.97608 2.67736 2.86839 3.29020 3.44164 3.50775 3.67195 3.70072 4.33429 4.48291 4.50689 4.79758 4.83302 4.89127 5.00363 5.10063 5.11467 5.18486 5.19362 5.21454 5.29594 5.31938 5.48697 5.54231 5.56328 5.67704 5.74258 5.81913 5.83900 5.96158 6.02428 6.06353 6.19066 6.22197 6.30085 6.35405 6.39441 6.42672 6.48193 6.52351 6.72534 6.76448 6.87276 6.93610 7.01588 7.16747 7.37977 7.67668 8.02344 8.39173 8.92007 9.74733 10.30916 11.14726 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003075 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.881939 B = 9102.097970 C =10476.150795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.056 2.944 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.339 4.339 8 H 0.071 0.929 9 N -0.594 5.594 10 C 0.139 3.861 11 C -0.133 4.133 12 C -0.106 4.106 13 H 0.083 0.917 14 C 0.120 3.880 15 N -0.597 5.597 16 C 0.581 3.419 17 O -0.528 6.528 18 C 0.031 3.969 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.063 4.063 22 C -0.150 4.150 23 C -0.092 4.092 24 C -0.130 4.130 25 C 0.107 3.893 26 N -0.577 5.577 27 H 0.423 0.577 28 C 0.101 3.899 29 C -0.134 4.134 30 C 0.175 3.825 31 H 0.013 0.987 32 H 0.270 0.730 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -16.584 -8.343 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.886 3.114 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.321 5.321 10 C 0.013 3.987 11 C -0.172 4.172 12 C -0.126 4.126 13 H 0.101 0.899 14 C -0.002 4.002 15 N -0.329 5.329 16 C 0.369 3.631 17 O -0.405 6.405 18 C -0.079 4.079 19 C -0.145 4.145 20 C -0.121 4.121 21 C -0.081 4.081 22 C -0.170 4.170 23 C -0.111 4.111 24 C -0.151 4.151 25 C -0.002 4.002 26 N -0.184 5.184 27 H 0.264 0.736 28 C -0.022 4.022 29 C -0.174 4.174 30 C 0.067 3.933 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.171 0.829 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.362 -15.047 -7.882 17.538 hybrid contribution 0.244 -1.010 -0.314 1.086 sum 4.606 -16.058 -8.196 18.607 Atomic orbital electron populations 1.70817 1.06763 1.30393 1.48006 1.25608 0.96314 1.00537 0.99677 0.83645 0.75048 0.76519 0.76163 1.21140 1.22151 1.22169 1.19658 1.02578 0.88052 1.36318 0.91093 1.44663 1.17481 1.04978 1.64959 1.21787 0.88257 0.95728 0.92881 1.23107 0.98904 0.96649 0.98506 1.22332 0.96835 0.96898 0.96498 0.89902 1.21646 0.93567 0.98400 0.86540 1.47800 1.45073 1.07354 1.32662 1.17272 0.79965 0.81874 0.84029 1.90820 1.43406 1.55173 1.51103 1.20130 1.06990 0.92834 0.87946 1.20844 1.02127 0.95383 0.96135 1.18203 1.05136 0.93916 0.94860 1.20393 0.96264 0.97655 0.93826 1.20623 1.03306 0.97425 0.95603 1.20865 0.98187 0.92642 0.99451 1.20111 1.03155 1.00370 0.91418 1.18395 0.98871 0.91147 0.91837 1.42532 1.51332 1.13572 1.10968 0.73571 1.21671 0.93389 0.92400 0.94694 1.21228 0.97673 1.00113 0.98376 1.19387 0.94305 0.86097 0.93528 0.96938 0.91782 0.92054 0.96209 0.91302 0.91444 0.89251 0.90483 0.82862 0.85822 0.85967 0.85618 0.85932 0.90964 0.90286 0.89611 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 12.56 55.49 0.70 -25.82 16 2 C -0.02 -0.54 5.14 -17.43 -0.09 -0.63 16 3 Si 1.06 24.49 30.01 -169.99 -5.10 19.39 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.34 -8.91 9.39 -15.06 -0.14 -9.05 16 8 H 0.07 1.85 7.17 -52.48 -0.38 1.47 16 9 N -0.59 -13.91 3.31 -165.71 -0.55 -14.45 16 10 C 0.14 3.04 4.66 -2.24 -0.01 3.03 16 11 C -0.13 -2.29 6.47 -23.95 -0.15 -2.45 16 12 C -0.11 -1.77 3.71 -89.08 -0.33 -2.11 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.12 1.94 5.49 -4.16 -0.02 1.92 16 15 N -0.60 -9.20 2.94 -175.99 -0.52 -9.72 16 16 C 0.58 9.15 7.60 -12.69 -0.10 9.05 16 17 O -0.53 -9.62 16.42 5.23 0.09 -9.54 16 18 C 0.03 0.42 6.13 -82.29 -0.50 -0.09 16 19 C -0.12 -1.53 10.65 -39.16 -0.42 -1.94 16 20 C -0.12 -1.40 6.16 -106.93 -0.66 -2.06 16 21 C -0.06 -0.62 10.06 -39.53 -0.40 -1.01 16 22 C -0.15 -1.29 9.96 -39.97 -0.40 -1.69 16 23 C -0.09 -0.79 10.02 -39.53 -0.40 -1.18 16 24 C -0.13 -1.28 10.08 -39.42 -0.40 -1.68 16 25 C 0.11 1.26 7.25 -83.98 -0.61 0.65 16 26 N -0.58 -6.87 4.76 -7.36 -0.04 -6.91 16 27 H 0.42 4.46 6.93 -40.82 -0.28 4.18 16 28 C 0.10 1.50 5.33 -4.64 -0.02 1.47 16 29 C -0.13 -2.28 5.60 -29.07 -0.16 -2.44 16 30 C 0.17 3.38 2.63 -69.96 -0.18 3.20 16 31 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 32 H 0.27 7.71 5.64 -40.82 -0.23 7.48 16 33 H 0.06 1.52 7.15 -51.93 -0.37 1.15 16 34 H 0.02 0.46 6.13 -51.93 -0.32 0.14 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.01 7.98 -51.93 -0.41 0.60 16 37 H 0.09 1.42 7.01 -51.93 -0.36 1.05 16 38 H 0.08 1.33 6.49 -51.93 -0.34 0.99 16 39 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.01 4.63 -51.93 -0.24 0.77 16 46 H 0.09 1.60 6.63 -51.93 -0.34 1.25 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -31.30 364.32 -11.23 -42.52 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.30 Total: 6.05 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -5.00 Total: -7.00 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.41 Total: -56.91 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.10 Total: 19.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.30 -11.23 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036888877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.873 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds