Wall clock time and date at job start Sat Apr 11 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48499 * 109.47166 * 270.00422 * 3 2 1 5 5 H 1.48508 * 109.46861 * 30.00090 * 3 2 1 6 6 H 1.48497 * 109.47475 * 150.00086 * 3 2 1 7 7 C 1.38818 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99899 * 176.75337 * 7 2 1 9 9 N 1.36938 * 119.99798 * 356.75154 * 7 2 1 10 10 C 1.44794 * 120.17959 * 209.86381 * 9 7 2 11 11 C 1.50590 * 112.03124 * 264.70633 * 10 9 7 12 12 C 1.51320 * 113.41753 * 285.04678 * 11 10 9 13 13 H 1.08997 * 111.99833 * 185.91433 * 12 11 10 14 14 C 1.54719 * 106.48288 * 307.87798 * 12 11 10 15 15 C 1.54237 * 104.37069 * 89.11575 * 14 12 11 16 16 C 1.51123 * 105.27928 * 11.32801 * 15 14 12 17 17 H 1.09000 * 106.47798 * 122.81983 * 16 15 14 18 18 C 1.49816 * 120.18313 * 29.84291 * 9 7 2 19 19 N 1.48053 * 109.76751 * 8.25750 * 16 15 14 20 20 C 1.34780 * 127.84402 * 155.03844 * 19 16 15 21 21 O 1.21672 * 120.00113 * 185.33755 * 20 19 16 22 22 C 1.46909 * 119.99530 * 5.33005 * 20 19 16 23 23 C 1.36370 * 126.77127 * 353.73584 * 22 20 19 24 24 N 1.35474 * 109.76818 * 180.19118 * 23 22 20 25 25 H 0.97000 * 124.78981 * 179.82213 * 24 23 22 26 26 C 1.37964 * 110.42709 * 359.55796 * 24 23 22 27 27 C 1.39120 * 133.18855 * 180.26874 * 26 24 23 28 28 C 1.37773 * 119.92702 * 179.97438 * 27 26 24 29 29 C 1.38756 * 120.63326 * 0.06274 * 28 27 26 30 30 C 1.37754 * 120.30336 * 359.96701 * 29 28 27 31 31 C 1.39276 * 119.66968 * 0.02562 * 30 29 28 32 32 H 0.96997 * 120.00204 * 359.97438 * 1 2 3 33 33 H 1.08999 * 108.93089 * 25.23698 * 10 9 7 34 34 H 1.08993 * 108.92746 * 143.91262 * 10 9 7 35 35 H 1.08997 * 108.47147 * 164.14824 * 11 10 9 36 36 H 1.08994 * 108.80695 * 46.18869 * 11 10 9 37 37 H 1.08996 * 110.45604 * 207.83422 * 14 12 11 38 38 H 1.08994 * 110.45548 * 330.39529 * 14 12 11 39 39 H 1.08996 * 110.28259 * 130.51452 * 15 14 12 40 40 H 1.09002 * 110.28463 * 252.51394 * 15 14 12 41 41 H 1.08996 * 109.54557 * 30.85575 * 18 9 7 42 42 H 1.09005 * 109.61823 * 270.62396 * 18 9 7 43 43 H 1.07994 * 125.11916 * 0.05229 * 23 22 20 44 44 H 1.07997 * 120.03970 * 359.97438 * 27 26 24 45 45 H 1.07995 * 119.67911 * 180.02562 * 28 27 26 46 46 H 1.07998 * 119.84676 * 179.97438 * 29 28 27 47 47 H 1.07996 * 120.16206 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0890 -1.2029 -0.0535 9 7 1.3272 -2.3872 0.0661 10 6 1.9340 -3.5428 0.6928 11 6 2.6048 -4.4428 -0.3111 12 6 1.6308 -5.2620 -1.1296 13 1 2.1405 -5.9781 -1.7742 14 6 0.7002 -5.9751 -0.1200 15 6 -0.4575 -4.9804 0.1021 16 6 -0.2877 -3.9265 -0.9676 17 1 -1.2183 -3.9091 -1.5349 18 6 -0.0521 -2.4948 -0.5085 19 7 0.7681 -4.3433 -1.9181 20 6 0.9169 -3.9699 -3.2045 21 8 1.7861 -4.4768 -3.8885 22 6 0.0293 -2.9509 -3.7809 23 6 -1.0571 -2.3826 -3.1838 24 7 -1.6271 -1.4878 -4.0263 25 1 -2.4153 -0.9603 -3.8228 26 6 -0.9249 -1.4282 -5.2124 27 6 -1.0853 -0.6851 -6.3775 28 6 -0.2015 -0.8455 -7.4222 29 6 0.8509 -1.7447 -7.3263 30 6 1.0260 -2.4901 -6.1811 31 6 0.1401 -2.3379 -5.1172 32 1 -0.4850 0.8400 0.0004 33 1 2.6769 -3.2042 1.4150 34 1 1.1626 -4.1063 1.2175 35 1 3.2698 -5.1211 0.2234 36 1 3.2023 -3.8313 -0.9871 37 1 0.3252 -6.9081 -0.5408 38 1 1.2261 -6.1626 0.8161 39 1 -1.4166 -5.4860 -0.0094 40 1 -0.3823 -4.5278 1.0909 41 1 -0.1468 -1.8191 -1.3585 42 1 -0.7870 -2.2299 0.2517 43 1 -1.4112 -2.6128 -2.1900 44 1 -1.9016 0.0168 -6.4630 45 1 -0.3296 -0.2663 -8.3247 46 1 1.5359 -1.8606 -8.1531 47 1 1.8461 -3.1890 -6.1087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039400608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:22 Heat of formation + Delta-G solvation = 84.650439 kcal Electronic energy + Delta-G solvation = -31319.781488 eV Core-core repulsion = 27469.684436 eV Total energy + Delta-G solvation = -3850.097053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26946 -40.04989 -37.40355 -36.70643 -34.56232 -33.09310 -31.60536 -31.13249 -31.02790 -29.26294 -28.48311 -27.13726 -25.77196 -24.01993 -23.10622 -22.58557 -21.60267 -20.85417 -20.58955 -19.29039 -18.41869 -17.44094 -16.79879 -16.26617 -15.83726 -15.45322 -15.28338 -15.11263 -14.52410 -14.27630 -13.93752 -13.79694 -13.57571 -13.37193 -13.17324 -12.93818 -12.88491 -12.53928 -12.20419 -12.10350 -11.63345 -11.50726 -11.44635 -11.30342 -11.20301 -10.88081 -10.78133 -10.73205 -10.62599 -10.45067 -10.19452 -10.04735 -9.85184 -9.38902 -9.34193 -9.27245 -8.51483 -8.01523 -7.99679 -7.41884 -6.65724 -5.83060 -3.25171 1.30009 1.81061 2.42782 3.24120 3.36462 3.42499 3.44730 3.52968 3.90750 4.30102 4.47217 4.78383 4.89053 4.94200 5.05041 5.20396 5.23230 5.30076 5.39695 5.41829 5.47681 5.59899 5.65147 5.73326 5.78150 5.82705 5.91718 5.95135 5.99061 6.05256 6.12943 6.25963 6.30675 6.36193 6.45741 6.52565 6.63142 6.64225 6.80116 6.81160 6.85106 6.88597 7.00268 7.08149 7.33357 7.34831 7.45208 7.65705 7.79285 8.24131 8.41589 8.88527 9.18919 9.83033 10.37422 11.26732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.005934 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.173863 B = 4717.423652 C = 6460.375821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.009 3.991 3 Si 0.900 3.100 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.063 0.937 9 N -0.588 5.588 10 C 0.148 3.852 11 C -0.156 4.156 12 C 0.144 3.856 13 H 0.084 0.916 14 C -0.127 4.127 15 C -0.118 4.118 16 C 0.096 3.904 17 H 0.052 0.948 18 C 0.160 3.840 19 N -0.595 5.595 20 C 0.621 3.379 21 O -0.562 6.562 22 C -0.225 4.225 23 C 0.114 3.886 24 N -0.578 5.578 25 H 0.418 0.582 26 C 0.084 3.916 27 C -0.128 4.128 28 C -0.108 4.108 29 C -0.148 4.148 30 C -0.063 4.063 31 C -0.057 4.057 32 H 0.251 0.749 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.198 0.802 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 -7.112 -5.460 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.197 4.197 12 C 0.041 3.959 13 H 0.102 0.898 14 C -0.165 4.165 15 C -0.156 4.156 16 C -0.008 4.008 17 H 0.070 0.930 18 C 0.036 3.964 19 N -0.327 5.327 20 C 0.413 3.587 21 O -0.442 6.442 22 C -0.235 4.235 23 C -0.018 4.018 24 N -0.179 5.179 25 H 0.256 0.744 26 C -0.021 4.021 27 C -0.149 4.149 28 C -0.127 4.127 29 C -0.168 4.168 30 C -0.082 4.082 31 C -0.062 4.062 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.214 0.786 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.998 -7.124 -5.898 11.023 hybrid contribution 0.129 1.441 0.167 1.457 sum -5.868 -5.683 -5.731 9.979 Atomic orbital electron populations 1.69884 1.05089 1.25059 1.56102 1.25078 0.95552 0.97831 1.00402 0.86319 0.79201 0.83862 0.77642 1.21620 1.21646 1.20490 1.19146 0.90589 0.83340 1.43998 0.91936 1.44012 1.14353 1.07149 1.65630 1.20123 0.96140 0.88856 0.92854 1.21975 0.98545 0.99221 0.99993 1.21624 0.91950 0.91102 0.91257 0.89758 1.22619 0.96665 0.97771 0.99469 1.21890 0.98254 0.95698 0.99790 1.22142 0.89782 0.97952 0.90954 0.92994 1.21966 0.87650 0.88266 0.98543 1.48677 1.28900 1.46083 1.09058 1.16549 0.82785 0.80302 0.79103 1.90695 1.36576 1.57047 1.59885 1.19865 1.01305 1.06559 0.95771 1.23256 0.93816 0.89369 0.95343 1.41601 1.27124 1.36682 1.12501 0.74442 1.18282 0.94866 1.00448 0.88522 1.19955 1.01835 1.01352 0.91743 1.20716 0.95110 0.99024 0.97839 1.20887 0.99241 0.98511 0.98118 1.20665 0.97845 0.98362 0.91303 1.18742 0.96081 0.97602 0.93736 0.93885 0.93591 0.93904 0.92601 0.92021 0.91804 0.90060 0.91364 0.89402 0.89808 0.93247 0.78627 0.86430 0.86059 0.86177 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.56 10.46 55.49 0.58 -23.98 16 2 C 0.01 0.23 5.36 -17.43 -0.09 0.14 16 3 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.47 9.58 -15.06 -0.14 -6.62 16 8 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 9 N -0.59 -13.81 2.90 -173.75 -0.50 -14.31 16 10 C 0.15 2.90 5.32 -6.16 -0.03 2.87 16 11 C -0.16 -2.82 4.96 -28.78 -0.14 -2.96 16 12 C 0.14 2.43 3.85 -66.68 -0.26 2.18 16 13 H 0.08 1.45 7.98 -51.93 -0.41 1.03 16 14 C -0.13 -1.67 6.02 -25.18 -0.15 -1.82 16 15 C -0.12 -1.63 5.80 -27.03 -0.16 -1.79 16 16 C 0.10 1.64 1.98 -68.44 -0.14 1.50 16 17 H 0.05 0.80 5.43 -51.93 -0.28 0.52 16 18 C 0.16 3.40 3.58 -2.61 -0.01 3.39 16 19 N -0.59 -11.28 2.62 -158.68 -0.42 -11.69 16 20 C 0.62 13.27 7.86 -12.75 -0.10 13.17 16 21 O -0.56 -13.25 16.54 5.21 0.09 -13.17 16 22 C -0.22 -4.48 6.17 -103.31 -0.64 -5.12 16 23 C 0.11 1.96 8.52 -16.62 -0.14 1.82 16 24 N -0.58 -8.71 5.99 -10.49 -0.06 -8.78 16 25 H 0.42 4.82 8.96 -40.82 -0.37 4.45 16 26 C 0.08 1.39 7.26 -83.97 -0.61 0.78 16 27 C -0.13 -1.80 10.07 -39.42 -0.40 -2.19 16 28 C -0.11 -1.43 10.01 -39.56 -0.40 -1.82 16 29 C -0.15 -2.16 10.03 -39.57 -0.40 -2.55 16 30 C -0.06 -1.12 9.86 -39.37 -0.39 -1.51 16 31 C -0.06 -1.09 6.27 -104.95 -0.66 -1.75 16 32 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.05 0.93 7.96 -51.93 -0.41 0.51 16 34 H 0.04 0.75 3.93 -51.93 -0.20 0.55 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.95 7.37 -51.93 -0.38 0.57 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.25 6.17 -51.93 -0.32 0.93 16 41 H 0.08 1.95 4.16 -51.93 -0.22 1.74 16 42 H 0.05 1.12 7.62 -51.93 -0.40 0.72 16 43 H 0.20 3.16 3.47 -52.49 -0.18 2.98 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 47 H 0.13 2.38 7.48 -52.49 -0.39 1.99 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -32.59 355.31 -10.91 -43.50 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.08 Total: 8.54 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -4.85 Total: -2.29 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.40 Total: -58.76 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.59 -10.91 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039400608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.150 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds