Wall clock time and date at job start Sat Apr 11 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99714 * 2 1 4 4 H 1.48505 * 109.47416 * 275.17370 * 3 2 1 5 5 H 1.48499 * 109.47462 * 35.17302 * 3 2 1 6 6 H 1.48503 * 109.47380 * 155.17649 * 3 2 1 7 7 C 1.38812 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99719 * 337.39741 * 7 2 1 9 9 N 1.37096 * 120.00076 * 157.11920 * 7 2 1 10 10 C 1.44785 * 119.96761 * 320.81787 * 9 7 2 11 11 C 1.51436 * 113.11137 * 267.46543 * 10 9 7 12 12 C 1.51213 * 114.19575 * 295.46350 * 11 10 9 13 13 H 1.09682 * 110.74084 * 179.21593 * 12 11 10 14 14 C 1.54143 * 108.43375 * 301.19201 * 12 11 10 15 15 C 1.53985 * 104.78923 * 92.48286 * 14 12 11 16 16 C 1.52094 * 105.53876 * 11.67403 * 15 14 12 17 17 H 1.09428 * 108.24421 * 123.04398 * 16 15 14 18 18 C 1.49270 * 120.01076 * 140.50016 * 9 7 2 19 19 N 1.47740 * 109.51455 * 5.30184 * 16 15 14 20 20 C 1.34985 * 127.14994 * 158.66438 * 19 16 15 21 21 O 1.21597 * 120.00116 * 184.71468 * 20 19 16 22 22 C 1.47504 * 120.00500 * 4.71722 * 20 19 16 23 23 C 1.39346 * 120.20668 * 308.29149 * 22 20 19 24 24 C 1.38323 * 120.49834 * 179.97438 * 23 22 20 25 25 C 1.37912 * 120.59042 * 0.02562 * 24 23 22 26 26 C 1.39544 * 119.98966 * 0.02562 * 25 24 23 27 27 C 1.46565 * 133.95651 * 179.97438 * 26 25 24 28 28 C 1.34221 * 106.88812 * 179.20232 * 27 26 25 29 29 N 1.36903 * 109.88209 * 0.69051 * 28 27 26 30 30 H 0.96997 * 125.02037 * 179.36757 * 29 28 27 31 31 C 1.37127 * 109.96640 * 359.39714 * 29 28 27 32 32 H 0.96994 * 120.00002 * 359.97438 * 1 2 3 33 33 H 1.09384 * 108.36673 * 27.76536 * 10 9 7 34 34 H 1.08846 * 109.29670 * 145.37477 * 10 9 7 35 35 H 1.09146 * 108.76272 * 57.19614 * 11 10 9 36 36 H 1.09316 * 108.48348 * 174.32318 * 11 10 9 37 37 H 1.09343 * 110.59027 * 211.59197 * 14 12 11 38 38 H 1.09308 * 110.66242 * 333.26768 * 14 12 11 39 39 H 1.09052 * 110.65053 * 252.08530 * 15 14 12 40 40 H 1.09280 * 110.26445 * 130.60323 * 15 14 12 41 41 H 1.09125 * 109.54787 * 256.03514 * 18 9 7 42 42 H 1.09156 * 109.49421 * 15.62114 * 18 9 7 43 43 H 1.08007 * 119.75256 * 359.97438 * 23 22 20 44 44 H 1.08004 * 119.70496 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.00152 * 180.02562 * 25 24 23 46 46 H 1.08001 * 126.55674 * 0.02562 * 27 26 25 47 47 H 1.08005 * 125.05930 * 180.09442 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3883 2.1097 -1.3944 5 1 1.5065 2.6187 0.8065 6 1 3.5982 1.4112 0.5878 7 6 2.0104 -1.2021 -0.0005 8 1 1.5326 -2.1016 0.3585 9 7 3.3004 -1.2486 -0.4622 10 6 3.6810 -0.4736 -1.6245 11 6 3.5616 -1.2480 -2.9204 12 6 4.4993 -2.4297 -3.0248 13 1 4.3560 -2.9563 -3.9762 14 6 5.9467 -1.9167 -2.8909 15 6 6.2673 -2.0323 -1.3893 16 6 5.1389 -2.8606 -0.7943 17 1 5.5778 -3.7334 -0.3013 18 6 4.3138 -2.0922 0.2374 19 7 4.2541 -3.3387 -1.8765 20 6 3.4080 -4.3896 -1.8333 21 8 2.7997 -4.7220 -2.8324 22 6 3.2211 -5.1349 -0.5741 23 6 4.3255 -5.6155 0.1266 24 6 4.1573 -6.3147 1.3082 25 6 2.8949 -6.5480 1.8119 26 6 1.7731 -6.0778 1.1281 27 6 0.3296 -6.1467 1.3726 28 6 -0.2682 -5.4904 0.3660 29 7 0.6746 -5.0215 -0.5090 30 1 0.4834 -4.5237 -1.3192 31 6 1.9292 -5.3601 -0.0712 32 1 -0.4850 0.8400 0.0004 33 1 3.0288 0.4026 -1.6832 34 1 4.7054 -0.1257 -1.5052 35 1 2.5348 -1.6034 -3.0237 36 1 3.7669 -0.5676 -3.7509 37 1 6.6302 -2.5365 -3.4776 38 1 6.0194 -0.8770 -3.2203 39 1 6.3025 -1.0456 -0.9264 40 1 7.2239 -2.5405 -1.2445 41 1 4.9717 -1.4555 0.8313 42 1 3.8069 -2.7971 0.8990 43 1 5.3204 -5.4408 -0.2558 44 1 5.0223 -6.6811 1.8411 45 1 2.7746 -7.0947 2.7356 46 1 -0.1589 -6.6221 2.2103 47 1 -1.3348 -5.3604 0.2569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039441107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:31 Heat of formation + Delta-G solvation = 67.605275 kcal Electronic energy + Delta-G solvation = -31750.582045 eV Core-core repulsion = 27899.745859 eV Total energy + Delta-G solvation = -3850.836187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09042 -40.11582 -37.74043 -36.45795 -34.81493 -32.92308 -31.71858 -31.52226 -31.06289 -29.16565 -28.50273 -27.33775 -25.93186 -24.12152 -23.49120 -21.69278 -21.60629 -21.12435 -20.43276 -19.62258 -18.71745 -17.32790 -17.08467 -16.50455 -15.87950 -15.63957 -15.26689 -14.94650 -14.72758 -14.28958 -14.10005 -13.89774 -13.60980 -13.24527 -13.19543 -13.11099 -12.81204 -12.71135 -12.45663 -12.27967 -12.15112 -11.85134 -11.63412 -11.48608 -11.29279 -11.17059 -11.07051 -10.88010 -10.62841 -10.48425 -10.31585 -10.13189 -9.68320 -9.52284 -9.51276 -9.32447 -8.51634 -8.15431 -7.93789 -7.41913 -6.78504 -6.01692 -3.42633 1.13359 1.91203 2.89825 3.12150 3.28277 3.43556 3.45765 3.48950 3.56909 4.17344 4.50243 4.59626 4.74708 4.91725 4.99442 5.04706 5.08985 5.15870 5.30450 5.33922 5.43993 5.49752 5.55033 5.60170 5.63362 5.79747 5.82964 5.89389 5.94343 6.01267 6.06537 6.08122 6.15722 6.19659 6.29184 6.31968 6.43126 6.53335 6.55996 6.61334 6.70985 6.75080 6.80368 6.94426 7.03159 7.05359 7.42176 7.87121 8.00055 8.07681 8.36217 8.57093 8.99363 9.70149 10.12686 11.14021 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.006308 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.093073 B = 4438.072664 C = 5806.134233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.878 3.122 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.151 4.151 12 C 0.145 3.855 13 H 0.083 0.917 14 C -0.125 4.125 15 C -0.121 4.121 16 C 0.109 3.891 17 H 0.074 0.926 18 C 0.133 3.867 19 N -0.580 5.580 20 C 0.593 3.407 21 O -0.555 6.555 22 C -0.119 4.119 23 C -0.077 4.077 24 C -0.157 4.157 25 C -0.056 4.056 26 C -0.113 4.113 27 C -0.215 4.215 28 C 0.066 3.934 29 N -0.574 5.574 30 H 0.423 0.577 31 C 0.151 3.849 32 H 0.262 0.738 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.145 0.855 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 -9.431 0.052 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.164 4.164 3 Si 0.709 3.291 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.192 4.192 12 C 0.042 3.958 13 H 0.101 0.899 14 C -0.164 4.164 15 C -0.159 4.159 16 C 0.004 3.996 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.312 5.312 20 C 0.382 3.618 21 O -0.435 6.435 22 C -0.124 4.124 23 C -0.097 4.097 24 C -0.176 4.176 25 C -0.075 4.075 26 C -0.118 4.118 27 C -0.240 4.240 28 C -0.061 4.061 29 N -0.174 5.174 30 H 0.261 0.739 31 C 0.040 3.960 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.163 0.837 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.563 -9.514 -0.555 13.501 hybrid contribution 0.168 1.490 -0.325 1.535 sum 9.731 -8.024 -0.880 12.643 Atomic orbital electron populations 1.69870 1.05979 1.26593 1.51596 1.25487 0.95045 0.97679 0.98150 0.86905 0.80674 0.84785 0.76770 1.21641 1.23082 1.19475 1.18705 0.86385 0.93958 1.39689 0.90990 1.44117 1.07377 1.53279 1.26904 1.20375 0.97601 0.93638 0.86223 1.21983 1.00565 0.96795 0.99875 1.21571 0.94127 0.90191 0.89882 0.89937 1.22493 0.95652 1.01868 0.96362 1.22063 0.97133 1.01002 0.95701 1.22021 0.90451 0.97556 0.89558 0.90831 1.21854 0.91430 0.93579 0.92376 1.48563 1.40585 1.27829 1.14193 1.17693 0.77889 0.78528 0.87644 1.90744 1.48217 1.68252 1.36247 1.18683 0.91206 1.05362 0.97188 1.20862 0.96562 0.97693 0.94548 1.20649 0.96842 1.03015 0.97133 1.20554 0.90850 0.97713 0.98374 1.19150 0.93959 1.02966 0.95727 1.21573 0.91135 1.09380 1.01877 1.21883 0.94791 0.98166 0.91307 1.41811 1.03991 1.48031 1.23578 0.73896 1.17819 0.85208 0.98179 0.94788 0.92847 0.93199 0.94810 0.91545 0.92550 0.91525 0.90142 0.90084 0.91096 0.95032 0.91797 0.85707 0.85877 0.86077 0.83718 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.97 55.49 0.78 -26.23 16 2 C 0.04 1.04 5.25 -17.43 -0.09 0.95 16 3 Si 0.88 22.03 25.18 -169.99 -4.28 17.75 16 4 H -0.29 -7.07 6.70 56.52 0.38 -6.70 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -7.05 9.88 -14.99 -0.15 -7.20 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 9 N -0.59 -13.50 2.16 -173.08 -0.37 -13.88 16 10 C 0.15 3.10 4.05 -5.75 -0.02 3.08 16 11 C -0.15 -2.86 5.03 -28.42 -0.14 -3.01 16 12 C 0.15 2.40 3.57 -67.13 -0.24 2.16 16 13 H 0.08 1.38 8.04 -51.54 -0.41 0.97 16 14 C -0.13 -1.58 5.99 -25.62 -0.15 -1.74 16 15 C -0.12 -1.52 5.73 -26.68 -0.15 -1.67 16 16 C 0.11 1.69 2.42 -67.80 -0.16 1.52 16 17 H 0.07 0.99 5.10 -51.69 -0.26 0.73 16 18 C 0.13 2.54 5.97 -2.59 -0.02 2.52 16 19 N -0.58 -10.29 2.31 -157.80 -0.37 -10.66 16 20 C 0.59 11.72 7.37 -12.39 -0.09 11.63 16 21 O -0.56 -12.47 17.38 5.28 0.09 -12.38 16 22 C -0.12 -2.15 4.91 -104.88 -0.52 -2.67 16 23 C -0.08 -1.13 8.28 -39.14 -0.32 -1.46 16 24 C -0.16 -2.05 10.00 -39.67 -0.40 -2.44 16 25 C -0.06 -0.79 10.09 -39.21 -0.40 -1.18 16 26 C -0.11 -1.88 6.37 -105.15 -0.67 -2.55 16 27 C -0.21 -3.23 11.09 -37.64 -0.42 -3.65 16 28 C 0.07 1.02 11.82 -16.70 -0.20 0.82 16 29 N -0.57 -10.51 6.04 -10.45 -0.06 -10.57 16 30 H 0.42 8.09 8.96 -40.82 -0.37 7.72 16 31 C 0.15 2.83 6.97 -83.76 -0.58 2.24 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.05 1.18 3.51 -51.71 -0.18 1.00 16 34 H 0.03 0.63 5.55 -52.02 -0.29 0.34 16 35 H 0.07 1.50 8.15 -51.85 -0.42 1.08 16 36 H 0.06 0.92 8.15 -51.75 -0.42 0.50 16 37 H 0.07 0.72 8.17 -51.74 -0.42 0.30 16 38 H 0.08 0.94 7.66 -51.76 -0.40 0.55 16 39 H 0.08 1.05 6.49 -51.90 -0.34 0.72 16 40 H 0.07 0.71 8.17 -51.77 -0.42 0.28 16 41 H 0.03 0.58 7.89 -51.86 -0.41 0.17 16 42 H 0.06 1.31 7.67 -51.84 -0.40 0.91 16 43 H 0.13 1.56 6.41 -52.48 -0.34 1.23 16 44 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.17 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -33.51 361.28 -9.85 -43.36 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.35 Total: 9.80 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -4.72 Total: -2.64 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.03 Total: -61.33 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.28 Total: 17.75 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.51 -9.85 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039441107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.963 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds