Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46986 * 300.00007 * 3 2 1 6 6 H 1.48502 * 109.46808 * 59.99947 * 3 2 1 7 7 C 1.38804 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00202 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.47164 * 125.59875 * 359.97438 * 9 7 2 11 11 C 1.54627 * 107.34065 * 179.06166 * 10 9 7 12 12 C 1.53461 * 102.75109 * 339.33943 * 11 10 9 13 13 C 1.53499 * 111.81788 * 272.84522 * 12 11 10 14 14 C 1.55448 * 101.29051 * 204.12883 * 13 12 11 15 15 N 1.47577 * 104.91631 * 35.62997 * 14 13 12 16 16 C 1.34779 * 125.67514 * 156.08830 * 15 14 13 17 17 O 1.21671 * 119.99462 * 185.15452 * 16 15 14 18 18 C 1.46905 * 120.00076 * 5.15668 * 16 15 14 19 19 C 1.36371 * 126.77169 * 24.54837 * 18 16 15 20 20 N 1.35466 * 109.77360 * 179.97438 * 19 18 16 21 21 H 0.97006 * 124.79184 * 180.02562 * 20 19 18 22 22 C 1.37968 * 110.42791 * 0.02562 * 20 19 18 23 23 C 1.39121 * 133.19336 * 180.02562 * 22 20 19 24 24 C 1.37767 * 119.92917 * 179.79456 * 23 22 20 25 25 C 1.38749 * 120.63203 * 0.43800 * 24 23 22 26 26 C 1.37759 * 120.30450 * 359.51883 * 25 24 23 27 27 C 1.39276 * 119.67092 * 0.25966 * 26 25 24 28 28 C 1.47450 * 108.64372 * 335.83146 * 15 14 13 29 29 C 1.47751 * 125.60558 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00297 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.86446 * 59.62646 * 10 9 7 32 32 H 1.08995 * 109.98274 * 298.56966 * 10 9 7 33 33 H 1.09005 * 110.75546 * 221.02393 * 11 10 9 34 34 H 1.09002 * 110.91345 * 97.72923 * 11 10 9 35 35 H 1.08995 * 111.03809 * 322.32921 * 13 12 11 36 36 H 1.09000 * 111.04187 * 86.24018 * 13 12 11 37 37 H 1.09000 * 110.46524 * 276.73588 * 14 13 12 38 38 H 1.09000 * 110.30085 * 154.44473 * 14 13 12 39 39 H 1.08003 * 125.11572 * 0.02562 * 19 18 16 40 40 H 1.07996 * 120.03295 * 359.95064 * 23 22 20 41 41 H 1.07994 * 119.68494 * 180.21368 * 24 23 22 42 42 H 1.08004 * 119.85004 * 179.79814 * 25 24 23 43 43 H 1.08002 * 120.16611 * 180.23039 * 26 25 24 44 44 H 1.08996 * 109.99817 * 121.79976 * 28 15 14 45 45 H 1.09008 * 109.98860 * 243.08686 * 28 15 14 46 46 H 1.09003 * 110.40029 * 83.56602 * 29 9 7 47 47 H 1.09005 * 110.39931 * 321.16530 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1389 -2.5317 0.0005 11 6 -0.4535 -4.0454 -0.0236 12 6 0.8480 -4.6532 -0.5638 13 6 0.8663 -4.6907 -2.0982 14 6 1.8742 -5.8443 -2.3625 15 7 1.6315 -6.8164 -1.2790 16 6 1.9160 -8.1330 -1.3259 17 8 1.5866 -8.8596 -0.4072 18 6 2.6238 -8.6906 -2.4862 19 6 3.4487 -8.0189 -3.3394 20 7 3.9168 -8.8667 -4.2867 21 1 4.5215 -8.6169 -5.0029 22 6 3.4124 -10.1355 -4.0891 23 6 3.5767 -11.3412 -4.7634 24 6 2.9300 -12.4725 -4.3162 25 6 2.1056 -12.4215 -3.2013 26 6 1.9308 -11.2373 -2.5196 27 6 2.5821 -10.0868 -2.9580 28 6 1.0317 -6.1064 -0.1343 29 6 1.9360 -3.7335 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5582 -2.0520 -0.8839 32 1 -0.5575 -2.0805 0.9001 33 1 -1.2861 -4.2563 -0.6949 34 1 -0.6651 -4.4149 0.9798 35 1 -0.1201 -4.9295 -2.4956 36 1 1.2339 -3.7500 -2.5083 37 1 2.8982 -5.4737 -2.3164 38 1 1.6795 -6.3018 -3.3325 39 1 3.6928 -6.9691 -3.2699 40 1 4.2125 -11.3909 -5.6349 41 1 3.0631 -13.4072 -4.8406 42 1 1.6022 -13.3154 -2.8637 43 1 1.2916 -11.2010 -1.6499 44 1 0.0659 -6.5469 0.1130 45 1 1.6971 -6.1598 0.7275 46 1 2.1973 -4.0322 1.0158 47 1 2.8178 -3.7508 -0.6401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041450738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = 60.085835 kcal Electronic energy + Delta-G solvation = -29025.014739 eV Core-core repulsion = 25173.852485 eV Total energy + Delta-G solvation = -3851.162254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68114 -40.02099 -38.13268 -37.16629 -35.59329 -32.81928 -32.16097 -30.44408 -29.75164 -29.56076 -29.17491 -28.06501 -25.65318 -24.26394 -23.30867 -22.78615 -21.90771 -21.84000 -20.24564 -19.22307 -18.76103 -17.86915 -16.92776 -16.75747 -16.12910 -16.00267 -15.64917 -14.99515 -14.73585 -14.70656 -14.27056 -14.23202 -13.99593 -13.83326 -13.63395 -13.17728 -12.85045 -12.60805 -12.36983 -12.35969 -12.00774 -11.94341 -11.87000 -11.48565 -11.26831 -11.22234 -11.15032 -10.88194 -10.79860 -10.18141 -10.03416 -9.99901 -9.91495 -9.78921 -9.72250 -9.64253 -8.61481 -8.55837 -8.50542 -7.98481 -6.84280 -5.72754 -3.06097 0.78683 1.33170 1.89557 2.69379 3.08199 3.32036 3.37753 3.43506 3.45873 3.75544 4.42471 4.46350 4.50464 4.56008 4.76597 4.85526 4.89232 5.00618 5.02355 5.18473 5.29920 5.33608 5.45332 5.46214 5.46321 5.48338 5.59636 5.78178 5.84294 5.85463 6.00179 6.04887 6.16734 6.22100 6.26807 6.28221 6.33606 6.37930 6.40653 6.48562 6.51717 6.63607 6.72854 6.82809 6.85487 7.09438 7.55231 7.62591 7.66512 7.82233 8.24001 8.34432 9.20597 9.80705 10.47021 11.38812 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026082 B = 0.002341 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.294408 B =11959.898794 C =12622.203384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.131 4.131 12 C -0.084 4.084 13 C -0.110 4.110 14 C 0.095 3.905 15 N -0.614 5.614 16 C 0.602 3.398 17 O -0.545 6.545 18 C -0.219 4.219 19 C 0.104 3.896 20 N -0.581 5.581 21 H 0.420 0.580 22 C 0.085 3.915 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.063 4.063 27 C -0.064 4.064 28 C 0.127 3.873 29 C 0.151 3.849 30 H 0.251 0.749 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.183 0.817 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.131 0.869 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.021 0.979 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 -20.712 -11.671 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.169 4.169 12 C -0.086 4.086 13 C -0.147 4.147 14 C -0.028 4.028 15 N -0.347 5.347 16 C 0.392 3.608 17 O -0.424 6.424 18 C -0.229 4.229 19 C -0.028 4.028 20 N -0.182 5.182 21 H 0.257 0.743 22 C -0.020 4.020 23 C -0.149 4.149 24 C -0.120 4.120 25 C -0.162 4.162 26 C -0.082 4.082 27 C -0.068 4.068 28 C 0.005 3.995 29 C 0.025 3.975 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.200 0.800 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.038 0.962 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.607 -20.904 -11.257 24.396 hybrid contribution 0.801 1.214 -0.346 1.495 sum 6.408 -19.691 -11.603 23.736 Atomic orbital electron populations 1.69968 1.04844 1.24876 1.57193 1.24789 0.95702 0.97613 1.02381 0.86071 0.78695 0.83915 0.77231 1.20568 1.21813 1.21799 1.19078 0.90406 0.82394 1.43574 0.90484 1.44577 1.01619 0.99697 1.87211 1.21196 0.84221 0.87965 1.01091 1.22706 0.94865 0.99532 0.99839 1.21580 0.98902 0.92657 0.95414 1.22572 0.98789 0.98038 0.95348 1.22678 0.99671 0.89899 0.90517 1.48518 1.62145 1.06779 1.17301 1.16839 0.78539 0.80025 0.85367 1.90770 1.54543 1.58316 1.38767 1.19993 1.08550 0.93356 1.01028 1.22426 0.95808 0.96031 0.88538 1.41558 1.42346 1.07179 1.27147 0.74276 1.18264 0.99315 0.86238 0.98208 1.20001 1.03775 0.90039 1.01078 1.20813 0.96984 0.97331 0.96888 1.20973 1.00732 0.97773 0.96719 1.20683 0.97782 0.90599 0.99086 1.18751 0.99709 0.92692 0.95647 1.21782 0.98362 0.90855 0.88501 1.21326 0.93494 0.85849 0.96841 0.93824 0.93529 0.93980 0.91866 0.92138 0.90844 0.88780 0.91344 0.90781 0.79993 0.86147 0.85657 0.85762 0.85133 0.91246 0.91254 0.96173 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.30 55.49 0.57 -25.91 16 2 C -0.01 -0.24 5.49 -17.44 -0.10 -0.33 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.09 10.28 -15.06 -0.15 -6.25 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.60 -14.72 3.41 -170.54 -0.58 -15.30 16 10 C 0.18 4.19 5.35 -2.82 -0.02 4.17 16 11 C -0.13 -2.33 5.85 -25.64 -0.15 -2.48 16 12 C -0.08 -1.37 0.61 -154.07 -0.09 -1.46 16 13 C -0.11 -1.55 5.99 -25.17 -0.15 -1.70 16 14 C 0.10 1.12 5.13 -2.15 -0.01 1.10 16 15 N -0.61 -8.76 3.34 -172.19 -0.58 -9.33 16 16 C 0.60 9.42 7.79 -12.75 -0.10 9.32 16 17 O -0.55 -10.34 17.07 5.21 0.09 -10.25 16 18 C -0.22 -2.86 5.94 -103.32 -0.61 -3.47 16 19 C 0.10 0.97 10.04 -16.62 -0.17 0.81 16 20 N -0.58 -4.55 5.99 -10.48 -0.06 -4.62 16 21 H 0.42 1.77 8.96 -40.82 -0.37 1.40 16 22 C 0.08 0.87 7.26 -83.96 -0.61 0.26 16 23 C -0.13 -1.09 10.07 -39.43 -0.40 -1.49 16 24 C -0.10 -0.84 10.01 -39.56 -0.40 -1.24 16 25 C -0.14 -1.38 10.03 -39.57 -0.40 -1.77 16 26 C -0.06 -0.78 10.00 -39.37 -0.39 -1.17 16 27 C -0.06 -0.82 6.29 -104.95 -0.66 -1.48 16 28 C 0.13 1.95 6.14 -3.71 -0.02 1.93 16 29 C 0.15 2.95 6.10 -3.23 -0.02 2.93 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 32 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 33 H 0.06 1.03 7.80 -51.93 -0.40 0.62 16 34 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 35 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 36 H 0.09 1.48 8.00 -51.93 -0.42 1.06 16 37 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 38 H 0.07 0.73 6.93 -51.93 -0.36 0.37 16 39 H 0.18 1.25 5.81 -52.48 -0.30 0.95 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.13 1.70 7.83 -52.49 -0.41 1.29 16 44 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 45 H 0.07 1.10 7.62 -51.92 -0.40 0.71 16 46 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 47 H 0.04 0.72 7.96 -51.93 -0.41 0.31 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -33.82 374.33 -11.07 -44.88 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.68 Total: 0.56 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -4.45 Total: -2.31 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.65 Total: -55.16 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.82 -11.07 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041450738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.970 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds