Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46986 * 300.00007 * 3 2 1 6 6 H 1.48502 * 109.46808 * 59.99947 * 3 2 1 7 7 C 1.38804 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00202 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.47164 * 125.59875 * 359.97438 * 9 7 2 11 11 C 1.54627 * 107.34065 * 179.06166 * 10 9 7 12 12 C 1.53461 * 102.75109 * 339.33943 * 11 10 9 13 13 C 1.53499 * 111.81788 * 272.84522 * 12 11 10 14 14 C 1.55448 * 101.29051 * 204.12883 * 13 12 11 15 15 N 1.47577 * 104.91631 * 35.62997 * 14 13 12 16 16 C 1.34779 * 125.67514 * 156.08830 * 15 14 13 17 17 O 1.21671 * 119.99462 * 185.15452 * 16 15 14 18 18 C 1.46905 * 120.00076 * 5.15668 * 16 15 14 19 19 C 1.36371 * 126.77169 * 24.54837 * 18 16 15 20 20 N 1.35466 * 109.77360 * 179.97438 * 19 18 16 21 21 H 0.97006 * 124.79184 * 180.02562 * 20 19 18 22 22 C 1.37968 * 110.42791 * 0.02562 * 20 19 18 23 23 C 1.39121 * 133.19336 * 180.02562 * 22 20 19 24 24 C 1.37767 * 119.92917 * 179.79456 * 23 22 20 25 25 C 1.38749 * 120.63203 * 0.43800 * 24 23 22 26 26 C 1.37759 * 120.30450 * 359.51883 * 25 24 23 27 27 C 1.39276 * 119.67092 * 0.25966 * 26 25 24 28 28 C 1.47450 * 108.64372 * 335.83146 * 15 14 13 29 29 C 1.47751 * 125.60558 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00297 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.86446 * 59.62646 * 10 9 7 32 32 H 1.08995 * 109.98274 * 298.56966 * 10 9 7 33 33 H 1.09005 * 110.75546 * 221.02393 * 11 10 9 34 34 H 1.09002 * 110.91345 * 97.72923 * 11 10 9 35 35 H 1.08995 * 111.03809 * 322.32921 * 13 12 11 36 36 H 1.09000 * 111.04187 * 86.24018 * 13 12 11 37 37 H 1.09000 * 110.46524 * 276.73588 * 14 13 12 38 38 H 1.09000 * 110.30085 * 154.44473 * 14 13 12 39 39 H 1.08003 * 125.11572 * 0.02562 * 19 18 16 40 40 H 1.07996 * 120.03295 * 359.95064 * 23 22 20 41 41 H 1.07994 * 119.68494 * 180.21368 * 24 23 22 42 42 H 1.08004 * 119.85004 * 179.79814 * 25 24 23 43 43 H 1.08002 * 120.16611 * 180.23039 * 26 25 24 44 44 H 1.08996 * 109.99817 * 121.79976 * 28 15 14 45 45 H 1.09008 * 109.98860 * 243.08686 * 28 15 14 46 46 H 1.09003 * 110.40029 * 83.56602 * 29 9 7 47 47 H 1.09005 * 110.39931 * 321.16530 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1389 -2.5317 0.0005 11 6 -0.4535 -4.0454 -0.0236 12 6 0.8480 -4.6532 -0.5638 13 6 0.8663 -4.6907 -2.0982 14 6 1.8742 -5.8443 -2.3625 15 7 1.6315 -6.8164 -1.2790 16 6 1.9160 -8.1330 -1.3259 17 8 1.5866 -8.8596 -0.4072 18 6 2.6238 -8.6906 -2.4862 19 6 3.4487 -8.0189 -3.3394 20 7 3.9168 -8.8667 -4.2867 21 1 4.5215 -8.6169 -5.0029 22 6 3.4124 -10.1355 -4.0891 23 6 3.5767 -11.3412 -4.7634 24 6 2.9300 -12.4725 -4.3162 25 6 2.1056 -12.4215 -3.2013 26 6 1.9308 -11.2373 -2.5196 27 6 2.5821 -10.0868 -2.9580 28 6 1.0317 -6.1064 -0.1343 29 6 1.9360 -3.7335 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5582 -2.0520 -0.8839 32 1 -0.5575 -2.0805 0.9001 33 1 -1.2861 -4.2563 -0.6949 34 1 -0.6651 -4.4149 0.9798 35 1 -0.1201 -4.9295 -2.4956 36 1 1.2339 -3.7500 -2.5083 37 1 2.8982 -5.4737 -2.3164 38 1 1.6795 -6.3018 -3.3325 39 1 3.6928 -6.9691 -3.2699 40 1 4.2125 -11.3909 -5.6349 41 1 3.0631 -13.4072 -4.8406 42 1 1.6022 -13.3154 -2.8637 43 1 1.2916 -11.2010 -1.6499 44 1 0.0659 -6.5469 0.1130 45 1 1.6971 -6.1598 0.7275 46 1 2.1973 -4.0322 1.0158 47 1 2.8178 -3.7508 -0.6401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041450738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 39.430548 kcal Electronic energy + Delta-G solvation = -29025.910419 eV Core-core repulsion = 25173.852485 eV Total energy + Delta-G solvation = -3852.057935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45706 -41.25796 -39.46672 -37.88465 -37.08828 -34.51549 -33.07294 -31.97882 -30.84225 -30.47617 -30.37443 -29.34911 -27.34885 -25.67212 -24.37259 -23.81251 -22.81776 -22.64288 -22.07941 -20.33257 -19.95919 -18.87320 -18.59691 -17.73863 -17.13371 -16.98744 -16.73428 -16.50539 -15.99250 -15.80085 -15.61273 -15.52438 -15.06274 -14.85837 -14.61905 -14.46471 -13.96795 -13.89606 -13.83459 -13.65826 -13.48686 -12.99372 -12.89927 -12.78011 -12.64615 -12.59032 -12.55284 -12.39734 -11.96294 -11.94393 -11.76566 -11.51831 -11.41106 -11.27052 -10.99101 -10.70755 -10.67209 -9.67079 -9.27141 -8.85619 -8.74812 -7.81259 -5.16125 0.03339 0.58725 1.04338 1.48051 1.49165 1.58961 1.90268 2.12802 2.33560 2.51846 2.96798 3.34968 3.44223 3.59011 3.64626 3.72258 3.80602 3.88944 3.96612 4.21038 4.24726 4.27735 4.32198 4.39715 4.42429 4.58281 4.62239 4.64636 4.71600 4.77119 4.79051 4.79290 4.89759 5.03244 5.06148 5.07763 5.14914 5.23646 5.37424 5.38916 5.45837 5.50091 5.54757 5.64174 5.70736 5.71475 5.82153 6.14050 6.22812 6.54941 6.57676 7.13970 7.21466 7.81016 8.46074 9.29263 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026082 B = 0.002341 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.294408 B =11959.898794 C =12622.203384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.298 1.298 7 C -0.234 4.234 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.190 3.810 11 C -0.119 4.119 12 C -0.071 4.071 13 C -0.106 4.106 14 C 0.100 3.900 15 N -0.613 5.613 16 C 0.599 3.401 17 O -0.594 6.594 18 C -0.266 4.266 19 C 0.138 3.862 20 N -0.560 5.560 21 H 0.441 0.559 22 C 0.075 3.925 23 C -0.119 4.119 24 C -0.105 4.105 25 C -0.139 4.139 26 C -0.101 4.101 27 C -0.094 4.094 28 C 0.134 3.866 29 C 0.150 3.850 30 H 0.245 0.755 31 H 0.017 0.983 32 H 0.001 0.999 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.213 0.787 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -22.053 -14.730 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.363 4.363 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.065 3.935 11 C -0.158 4.158 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.021 4.021 15 N -0.345 5.345 16 C 0.392 3.608 17 O -0.477 6.477 18 C -0.277 4.277 19 C 0.003 3.997 20 N -0.163 5.163 21 H 0.282 0.718 22 C -0.031 4.031 23 C -0.139 4.139 24 C -0.124 4.124 25 C -0.158 4.158 26 C -0.120 4.120 27 C -0.098 4.098 28 C 0.011 3.989 29 C 0.025 3.975 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.019 0.981 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.229 0.771 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.158 0.842 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.114 -22.268 -14.366 27.715 hybrid contribution 0.071 1.560 0.593 1.671 sum 8.185 -20.708 -13.774 26.182 Atomic orbital electron populations 1.70188 1.06265 1.25028 1.58648 1.25605 0.96544 1.00886 1.02993 0.85051 0.78293 0.79735 0.76503 1.18871 1.21901 1.22526 1.19470 0.90992 0.83564 1.42278 0.89832 1.44846 1.02237 1.00899 1.86914 1.20910 0.83805 0.91100 0.97669 1.22576 0.96529 0.95584 1.01065 1.21391 0.96414 0.92355 0.97080 1.22528 1.00161 0.98537 0.93186 1.22818 1.00006 0.88410 0.90878 1.48515 1.61769 1.06831 1.17411 1.17275 0.78071 0.79849 0.85610 1.90732 1.56770 1.59452 1.40709 1.19860 1.11487 0.94301 1.02056 1.22725 0.93162 0.96895 0.86900 1.41541 1.41628 1.06132 1.26991 0.71761 1.18445 0.99246 0.87620 0.97748 1.20452 1.03059 0.89073 1.01346 1.21224 0.96046 0.98831 0.96256 1.21250 1.00491 0.97287 0.96746 1.20674 0.99408 0.92241 0.99689 1.19051 1.00869 0.92803 0.97106 1.21563 0.98277 0.90113 0.88973 1.21464 0.94796 0.84214 0.97055 0.94559 0.96498 0.98101 0.89852 0.91521 0.89967 0.90009 0.89202 0.88056 0.77074 0.82720 0.82402 0.84165 0.87801 0.91574 0.92011 0.96653 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.59 10.30 21.65 0.22 -56.37 16 2 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 3 Si 0.98 44.97 29.55 68.60 2.03 47.00 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.68 10.28 84.03 0.86 -11.81 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.62 -30.70 3.41 -693.46 -2.36 -33.07 16 10 C 0.19 9.17 5.35 86.81 0.46 9.63 16 11 C -0.12 -4.26 5.85 31.30 0.18 -4.07 16 12 C -0.07 -2.25 0.61 -51.90 -0.03 -2.28 16 13 C -0.11 -2.80 5.99 31.60 0.19 -2.61 16 14 C 0.10 2.05 5.13 87.02 0.45 2.50 16 15 N -0.61 -16.74 3.34 -816.92 -2.73 -19.47 16 16 C 0.60 18.80 7.79 86.51 0.67 19.48 16 17 O -0.59 -23.66 17.07 -4.26 -0.07 -23.73 16 18 C -0.27 -6.70 5.94 -19.02 -0.11 -6.81 16 19 C 0.14 2.12 10.04 83.70 0.84 2.96 16 20 N -0.56 -6.60 5.99 -187.08 -1.12 -7.72 16 21 H 0.44 1.54 8.96 -92.70 -0.83 0.71 16 22 C 0.07 1.33 7.26 38.91 0.28 1.61 16 23 C -0.12 -1.58 10.07 22.37 0.23 -1.35 16 24 C -0.10 -1.42 10.01 22.28 0.22 -1.20 16 25 C -0.14 -2.56 10.03 22.28 0.22 -2.33 16 26 C -0.10 -2.60 10.00 22.41 0.22 -2.37 16 27 C -0.09 -2.38 6.29 -20.08 -0.13 -2.51 16 28 C 0.13 4.04 6.14 86.08 0.53 4.57 16 29 C 0.15 5.76 6.10 86.22 0.53 6.28 16 30 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.02 0.90 7.39 -2.39 -0.02 0.88 16 32 H 0.00 0.04 7.49 -2.39 -0.02 0.02 16 33 H 0.08 2.65 7.80 -2.38 -0.02 2.63 16 34 H 0.07 2.29 8.07 -2.39 -0.02 2.28 16 35 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 36 H 0.08 2.42 8.00 -2.39 -0.02 2.40 16 37 H 0.09 1.50 7.29 -2.39 -0.02 1.48 16 38 H 0.10 1.59 6.93 -2.39 -0.02 1.57 16 39 H 0.21 1.87 5.81 -2.91 -0.02 1.85 16 40 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.10 3.06 7.83 -2.91 -0.02 3.04 16 44 H 0.07 2.06 7.88 -2.39 -0.02 2.04 16 45 H 0.06 1.96 7.62 -2.38 -0.02 1.95 16 46 H 0.02 0.62 7.79 -2.39 -0.02 0.60 16 47 H 0.05 1.88 7.96 -2.38 -0.02 1.86 16 Total: -1.00 -78.80 374.33 2.22 -76.58 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.17 Total: 10.41 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.09 Total: 6.36 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -5.99 Total: -116.63 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.07 Total: -23.73 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -78.80 2.22 -76.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041450738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.014 kcal (2) G-P(sol) polarization free energy of solvation -78.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds