Wall clock time and date at job start Sat Apr 11 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48503 * 109.46688 * 239.99605 * 3 2 1 5 5 H 1.48498 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47250 * 119.99904 * 3 2 1 7 7 C 1.38814 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99652 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.47576 * 125.67736 * 0.03201 * 9 7 2 11 11 C 1.55214 * 105.02726 * 203.80921 * 10 9 7 12 12 C 1.53492 * 101.39167 * 324.66619 * 11 10 9 13 13 C 1.53699 * 111.85408 * 155.56967 * 12 11 10 14 14 C 1.54629 * 102.63634 * 154.27334 * 13 12 11 15 15 N 1.47155 * 107.46388 * 339.48997 * 14 13 12 16 16 C 1.34775 * 125.60491 * 178.97833 * 15 14 13 17 17 O 1.21570 * 120.00254 * 174.74900 * 16 15 14 18 18 C 1.47655 * 119.99759 * 354.74356 * 16 15 14 19 19 C 1.40211 * 119.97335 * 187.99554 * 18 16 15 20 20 C 1.36319 * 120.66805 * 179.97438 * 19 18 16 21 21 C 1.39368 * 120.23717 * 0.02562 * 20 19 18 22 22 N 1.37400 * 133.24853 * 179.97438 * 21 20 19 23 23 H 0.96994 * 125.01082 * 0.03054 * 22 21 20 24 24 C 1.36861 * 109.97941 * 179.97438 * 22 21 20 25 25 C 1.34191 * 109.95979 * 0.02562 * 24 22 21 26 26 C 1.40871 * 119.63953 * 359.97438 * 21 20 19 27 27 C 1.39149 * 119.97536 * 7.72724 * 18 16 15 28 28 C 1.47760 * 108.79706 * 359.01628 * 15 14 13 29 29 C 1.47449 * 125.67700 * 179.97438 * 9 7 2 30 30 H 0.97006 * 119.99867 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.33021 * 322.69263 * 10 9 7 32 32 H 1.08996 * 110.33505 * 84.81563 * 10 9 7 33 33 H 1.09000 * 111.04004 * 206.63996 * 11 10 9 34 34 H 1.08998 * 111.04070 * 82.69651 * 11 10 9 35 35 H 1.09004 * 110.73589 * 36.02936 * 13 12 11 36 36 H 1.08995 * 110.88073 * 272.58277 * 13 12 11 37 37 H 1.09000 * 109.87400 * 219.98245 * 14 13 12 38 38 H 1.08996 * 109.87199 * 99.00053 * 14 13 12 39 39 H 1.08000 * 119.66393 * 0.02562 * 19 18 16 40 40 H 1.08004 * 119.88035 * 180.02562 * 20 19 18 41 41 H 1.08003 * 125.01832 * 179.97438 * 24 22 21 42 42 H 1.08008 * 126.53753 * 180.02562 * 25 24 22 43 43 H 1.08008 * 120.30108 * 359.97438 * 27 18 16 44 44 H 1.09000 * 110.39263 * 141.14226 * 28 15 14 45 45 H 1.09001 * 110.39587 * 263.42789 * 28 15 14 46 46 H 1.09005 * 109.99271 * 58.46361 * 29 9 7 47 47 H 1.08999 * 110.02947 * 297.15156 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 -0.1431 -2.5340 0.0016 11 6 -0.4080 -3.9379 0.6081 12 6 0.7836 -4.7349 0.0595 13 6 1.1151 -5.9487 0.9422 14 6 1.7978 -6.9148 -0.0537 15 7 1.3951 -6.5086 -1.4095 16 6 1.7972 -7.0928 -2.5556 17 8 1.3266 -6.7351 -3.6179 18 6 2.8095 -8.1671 -2.5209 19 6 3.3508 -8.6585 -3.7174 20 6 4.2865 -9.6497 -3.7018 21 6 4.7176 -10.1890 -2.4912 22 7 5.6231 -11.1701 -2.1669 23 1 6.1454 -11.6788 -2.8067 24 6 5.6805 -11.3230 -0.8081 25 6 4.8340 -10.4674 -0.2147 26 6 4.1814 -9.7039 -1.2822 27 6 3.2297 -8.6873 -1.3006 28 6 0.4781 -5.3544 -1.3081 29 6 1.9327 -3.7317 0.0017 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6004 -1.7618 0.6203 32 1 -0.5290 -2.4805 -1.0163 33 1 -1.3518 -4.3478 0.2484 34 1 -0.3878 -3.9039 1.6973 35 1 0.2051 -6.3912 1.3474 36 1 1.8007 -5.6712 1.7427 37 1 1.4718 -7.9369 0.1390 38 1 2.8809 -6.8463 0.0472 39 1 3.0236 -8.2469 -4.6607 40 1 4.6952 -10.0184 -4.6310 41 1 6.3131 -12.0286 -0.2900 42 1 4.6662 -10.3612 0.8469 43 1 2.8189 -8.3085 -0.3763 44 1 0.6806 -4.6374 -2.1037 45 1 -0.5587 -5.6879 -1.3531 46 1 2.5751 -3.8503 0.8744 47 1 2.5116 -3.8798 -0.9099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041612491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:52 Heat of formation + Delta-G solvation = 84.973703 kcal Electronic energy + Delta-G solvation = -29204.794254 eV Core-core repulsion = 25354.711219 eV Total energy + Delta-G solvation = -3850.083035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55991 -40.32418 -38.46045 -36.58083 -35.73837 -32.94330 -32.15408 -30.70755 -30.01190 -29.36366 -28.99410 -27.78864 -25.73242 -24.73621 -23.36419 -22.28471 -22.12749 -21.13263 -20.25727 -19.51391 -18.77736 -18.24926 -17.12647 -16.68071 -16.31913 -15.77478 -15.44238 -14.86640 -14.71938 -14.54106 -14.34344 -14.02894 -13.81958 -13.56299 -13.46834 -13.36576 -13.02079 -12.86665 -12.57536 -12.28892 -12.09074 -11.80118 -11.69496 -11.47358 -11.39878 -11.29245 -10.88999 -10.76736 -10.63994 -10.21406 -10.06335 -10.00337 -9.88462 -9.74868 -9.69495 -9.44924 -8.61427 -8.57337 -8.35320 -8.03604 -6.78797 -5.60945 -3.02003 0.80630 1.10195 2.44057 2.80155 2.96260 3.11216 3.43841 3.48025 3.49303 3.86262 4.34879 4.49077 4.51847 4.58729 4.67735 4.84700 4.93961 5.01723 5.06319 5.19140 5.29662 5.30536 5.38496 5.48046 5.50250 5.55553 5.67418 5.81921 5.83795 5.86033 5.97268 6.03430 6.09861 6.19412 6.21123 6.27944 6.38474 6.39334 6.44741 6.45461 6.58601 6.65975 6.80747 6.85514 6.87765 7.17268 7.55880 7.66074 7.67109 7.89467 8.32846 8.39962 9.26377 9.87031 10.52429 11.43130 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.002547 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.770980 B =10990.090850 C =11114.843407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.130 4.130 12 C -0.082 4.082 13 C -0.120 4.120 14 C 0.091 3.909 15 N -0.610 5.610 16 C 0.575 3.425 17 O -0.542 6.542 18 C -0.154 4.154 19 C -0.042 4.042 20 C -0.141 4.141 21 C 0.113 3.887 22 N -0.595 5.595 23 H 0.415 0.585 24 C 0.042 3.958 25 C -0.194 4.194 26 C -0.122 4.122 27 C -0.066 4.066 28 C 0.128 3.872 29 C 0.153 3.847 30 H 0.252 0.748 31 H 0.106 0.894 32 H 0.013 0.987 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.171 0.829 42 H 0.150 0.850 43 H 0.164 0.836 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -25.579 0.621 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.169 4.169 12 C -0.083 4.083 13 C -0.158 4.158 14 C -0.032 4.032 15 N -0.343 5.343 16 C 0.365 3.635 17 O -0.421 6.421 18 C -0.158 4.158 19 C -0.062 4.062 20 C -0.162 4.162 21 C 0.004 3.996 22 N -0.198 5.198 23 H 0.252 0.748 24 C -0.083 4.083 25 C -0.219 4.219 26 C -0.127 4.127 27 C -0.084 4.084 28 C 0.006 3.994 29 C 0.027 3.973 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.188 0.812 42 H 0.167 0.833 43 H 0.181 0.819 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.000 -25.263 -0.071 26.500 hybrid contribution 0.919 0.455 -0.385 1.095 sum 8.919 -24.809 -0.456 26.367 Atomic orbital electron populations 1.69790 1.04853 1.24829 1.57681 1.24769 0.95721 0.97645 1.02535 0.86161 0.78406 0.83129 0.77860 1.21261 1.21591 1.21207 1.19022 0.90442 0.82500 1.42987 0.90645 1.44634 1.01869 0.99609 1.86895 1.22001 0.84614 0.92365 0.98310 1.22795 0.95000 0.98795 1.00280 1.21611 0.98704 0.94467 0.93549 1.22623 1.01020 0.94926 0.97191 1.22610 0.99807 0.98220 0.82524 1.48486 1.47427 1.33047 1.05341 1.17835 0.81453 0.81642 0.82554 1.90769 1.57466 1.64642 1.29230 1.19618 1.01604 1.00599 0.93996 1.20610 0.93667 0.93894 0.98006 1.19671 1.01492 1.00198 0.94820 1.18495 0.93379 0.92169 0.95520 1.41792 1.37131 1.33594 1.07246 0.74813 1.21826 1.02155 1.02080 0.82231 1.21765 1.01559 1.00136 0.98397 1.19184 1.00924 0.99988 0.92609 1.22270 0.93746 0.93072 0.99346 1.22090 0.92547 0.86614 0.98120 1.21050 0.92814 0.85478 0.97969 0.93720 0.87676 0.96927 0.91980 0.91517 0.90358 0.89531 0.90721 0.90385 0.84449 0.85802 0.81202 0.83277 0.81925 0.89812 0.91449 0.95591 0.96046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.10 55.49 0.56 -26.56 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -15.55 3.41 -170.43 -0.58 -16.13 16 10 C 0.15 3.66 5.86 -2.28 -0.01 3.65 16 11 C -0.13 -2.34 6.06 -25.30 -0.15 -2.50 16 12 C -0.08 -1.38 0.61 -153.96 -0.09 -1.47 16 13 C -0.12 -1.47 5.98 -25.51 -0.15 -1.63 16 14 C 0.09 1.06 4.86 -2.83 -0.01 1.05 16 15 N -0.61 -9.39 3.34 -177.02 -0.59 -9.98 16 16 C 0.57 9.63 7.80 -12.42 -0.10 9.54 16 17 O -0.54 -10.95 16.67 5.30 0.09 -10.86 16 18 C -0.15 -2.14 5.87 -104.97 -0.62 -2.76 16 19 C -0.04 -0.53 9.51 -39.53 -0.38 -0.90 16 20 C -0.14 -1.46 10.00 -39.85 -0.40 -1.86 16 21 C 0.11 1.15 7.27 -83.95 -0.61 0.54 16 22 N -0.59 -4.16 6.05 -10.61 -0.06 -4.23 16 23 H 0.42 1.61 8.96 -40.82 -0.37 1.24 16 24 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 25 C -0.19 -1.62 11.09 -37.65 -0.42 -2.04 16 26 C -0.12 -1.35 6.36 -105.16 -0.67 -2.02 16 27 C -0.07 -0.78 8.64 -38.86 -0.34 -1.12 16 28 C 0.13 2.18 5.73 -3.24 -0.02 2.16 16 29 C 0.15 3.19 6.45 -3.70 -0.02 3.17 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.11 2.85 5.90 -51.93 -0.31 2.54 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.99 7.77 -51.93 -0.40 0.59 16 34 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 36 H 0.09 1.01 7.64 -51.93 -0.40 0.61 16 37 H 0.07 0.70 6.80 -51.93 -0.35 0.35 16 38 H 0.08 0.86 6.64 -51.93 -0.34 0.51 16 39 H 0.14 1.73 7.64 -52.49 -0.40 1.33 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.16 1.64 2.74 -58.73 -0.16 1.48 16 44 H 0.08 1.70 7.95 -51.93 -0.41 1.29 16 45 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 46 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16 47 H 0.02 0.48 7.80 -51.93 -0.41 0.08 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -35.08 369.91 -10.90 -45.98 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.42 Total: 1.75 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -4.44 Total: -2.93 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.68 Total: -56.89 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.08 -10.90 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041612491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.956 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds