Wall clock time and date at job start Sat Apr 11 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48503 * 109.46688 * 239.99605 * 3 2 1 5 5 H 1.48498 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47250 * 119.99904 * 3 2 1 7 7 C 1.38814 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99652 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.47576 * 125.67736 * 0.03201 * 9 7 2 11 11 C 1.55214 * 105.02726 * 203.80921 * 10 9 7 12 12 C 1.53492 * 101.39167 * 324.66619 * 11 10 9 13 13 C 1.53699 * 111.85408 * 155.56967 * 12 11 10 14 14 C 1.54629 * 102.63634 * 154.27334 * 13 12 11 15 15 N 1.47155 * 107.46388 * 339.48997 * 14 13 12 16 16 C 1.34775 * 125.60491 * 178.97833 * 15 14 13 17 17 O 1.21570 * 120.00254 * 174.74900 * 16 15 14 18 18 C 1.47655 * 119.99759 * 354.74356 * 16 15 14 19 19 C 1.40211 * 119.97335 * 187.99554 * 18 16 15 20 20 C 1.36319 * 120.66805 * 179.97438 * 19 18 16 21 21 C 1.39368 * 120.23717 * 0.02562 * 20 19 18 22 22 N 1.37400 * 133.24853 * 179.97438 * 21 20 19 23 23 H 0.96994 * 125.01082 * 0.03054 * 22 21 20 24 24 C 1.36861 * 109.97941 * 179.97438 * 22 21 20 25 25 C 1.34191 * 109.95979 * 0.02562 * 24 22 21 26 26 C 1.40871 * 119.63953 * 359.97438 * 21 20 19 27 27 C 1.39149 * 119.97536 * 7.72724 * 18 16 15 28 28 C 1.47760 * 108.79706 * 359.01628 * 15 14 13 29 29 C 1.47449 * 125.67700 * 179.97438 * 9 7 2 30 30 H 0.97006 * 119.99867 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.33021 * 322.69263 * 10 9 7 32 32 H 1.08996 * 110.33505 * 84.81563 * 10 9 7 33 33 H 1.09000 * 111.04004 * 206.63996 * 11 10 9 34 34 H 1.08998 * 111.04070 * 82.69651 * 11 10 9 35 35 H 1.09004 * 110.73589 * 36.02936 * 13 12 11 36 36 H 1.08995 * 110.88073 * 272.58277 * 13 12 11 37 37 H 1.09000 * 109.87400 * 219.98245 * 14 13 12 38 38 H 1.08996 * 109.87199 * 99.00053 * 14 13 12 39 39 H 1.08000 * 119.66393 * 0.02562 * 19 18 16 40 40 H 1.08004 * 119.88035 * 180.02562 * 20 19 18 41 41 H 1.08003 * 125.01832 * 179.97438 * 24 22 21 42 42 H 1.08008 * 126.53753 * 180.02562 * 25 24 22 43 43 H 1.08008 * 120.30108 * 359.97438 * 27 18 16 44 44 H 1.09000 * 110.39263 * 141.14226 * 28 15 14 45 45 H 1.09001 * 110.39587 * 263.42789 * 28 15 14 46 46 H 1.09005 * 109.99271 * 58.46361 * 29 9 7 47 47 H 1.08999 * 110.02947 * 297.15156 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 -0.1431 -2.5340 0.0016 11 6 -0.4080 -3.9379 0.6081 12 6 0.7836 -4.7349 0.0595 13 6 1.1151 -5.9487 0.9422 14 6 1.7978 -6.9148 -0.0537 15 7 1.3951 -6.5086 -1.4095 16 6 1.7972 -7.0928 -2.5556 17 8 1.3266 -6.7351 -3.6179 18 6 2.8095 -8.1671 -2.5209 19 6 3.3508 -8.6585 -3.7174 20 6 4.2865 -9.6497 -3.7018 21 6 4.7176 -10.1890 -2.4912 22 7 5.6231 -11.1701 -2.1669 23 1 6.1454 -11.6788 -2.8067 24 6 5.6805 -11.3230 -0.8081 25 6 4.8340 -10.4674 -0.2147 26 6 4.1814 -9.7039 -1.2822 27 6 3.2297 -8.6873 -1.3006 28 6 0.4781 -5.3544 -1.3081 29 6 1.9327 -3.7317 0.0017 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6004 -1.7618 0.6203 32 1 -0.5290 -2.4805 -1.0163 33 1 -1.3518 -4.3478 0.2484 34 1 -0.3878 -3.9039 1.6973 35 1 0.2051 -6.3912 1.3474 36 1 1.8007 -5.6712 1.7427 37 1 1.4718 -7.9369 0.1390 38 1 2.8809 -6.8463 0.0472 39 1 3.0236 -8.2469 -4.6607 40 1 4.6952 -10.0184 -4.6310 41 1 6.3131 -12.0286 -0.2900 42 1 4.6662 -10.3612 0.8469 43 1 2.8189 -8.3085 -0.3763 44 1 0.6806 -4.6374 -2.1037 45 1 -0.5587 -5.6879 -1.3531 46 1 2.5751 -3.8503 0.8744 47 1 2.5116 -3.8798 -0.9099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041612491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:51 Heat of formation + Delta-G solvation = 62.552987 kcal Electronic energy + Delta-G solvation = -29205.766489 eV Core-core repulsion = 25354.711219 eV Total energy + Delta-G solvation = -3851.055270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31538 -41.51246 -39.82226 -37.50695 -37.29425 -34.64091 -33.09859 -32.23495 -30.98591 -30.82468 -29.84454 -29.15617 -27.45957 -26.14469 -24.63104 -23.32853 -23.04668 -22.14973 -21.80041 -20.55162 -20.15545 -19.04056 -18.84066 -17.95334 -17.32130 -16.98179 -16.75416 -16.53068 -16.10072 -15.63177 -15.43144 -15.18744 -14.93447 -14.75733 -14.72647 -14.36571 -14.08666 -13.94313 -13.84344 -13.54907 -13.43567 -13.23519 -13.12648 -12.88384 -12.79156 -12.64317 -12.52153 -12.41927 -12.06030 -11.83014 -11.69239 -11.47190 -11.42027 -11.08107 -10.95859 -10.77595 -10.72638 -9.76352 -9.21634 -8.88219 -8.71343 -7.77167 -5.21275 -0.06090 0.27362 1.44708 1.48501 1.54728 1.79235 1.88134 1.96047 2.24996 2.49289 2.93421 3.28098 3.39974 3.49059 3.62531 3.68435 3.83364 3.88481 3.96981 4.19358 4.21241 4.23033 4.32906 4.35381 4.45897 4.54950 4.67693 4.69714 4.71011 4.72888 4.77042 4.90433 4.94154 4.99784 5.06175 5.10626 5.12868 5.23460 5.30387 5.31750 5.36155 5.45136 5.47574 5.65749 5.66570 5.78358 5.83612 6.11445 6.31884 6.48058 6.70317 7.08145 7.11274 7.78506 8.42860 9.24492 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.002547 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.770980 B =10990.090850 C =11114.843407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.152 3.848 11 C -0.111 4.111 12 C -0.073 4.073 13 C -0.106 4.106 14 C 0.087 3.913 15 N -0.611 5.611 16 C 0.566 3.434 17 O -0.595 6.595 18 C -0.179 4.179 19 C -0.068 4.068 20 C -0.133 4.133 21 C 0.100 3.900 22 N -0.583 5.583 23 H 0.431 0.569 24 C 0.062 3.938 25 C -0.215 4.215 26 C -0.141 4.141 27 C -0.062 4.062 28 C 0.131 3.869 29 C 0.152 3.848 30 H 0.247 0.753 31 H 0.074 0.926 32 H -0.024 1.024 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.214 0.786 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.035 0.965 45 H 0.080 0.920 46 H 0.041 0.959 47 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -29.140 3.252 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.353 5.353 10 C 0.027 3.973 11 C -0.149 4.149 12 C -0.074 4.074 13 C -0.144 4.144 14 C -0.034 4.034 15 N -0.342 5.342 16 C 0.359 3.641 17 O -0.478 6.478 18 C -0.183 4.183 19 C -0.088 4.088 20 C -0.153 4.153 21 C -0.010 4.010 22 N -0.186 5.186 23 H 0.271 0.729 24 C -0.064 4.064 25 C -0.239 4.239 26 C -0.146 4.146 27 C -0.080 4.080 28 C 0.008 3.992 29 C 0.027 3.973 30 H 0.057 0.943 31 H 0.092 0.908 32 H -0.006 1.006 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.231 0.769 42 H 0.187 0.813 43 H 0.196 0.804 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 10.187 -28.880 2.593 30.733 hybrid contribution 0.375 1.462 -1.234 1.950 sum 10.562 -27.418 1.359 29.413 Atomic orbital electron populations 1.70055 1.06151 1.25077 1.58515 1.25625 0.96670 1.00929 1.02727 0.85136 0.77160 0.78807 0.78134 1.21050 1.21753 1.19785 1.19397 0.90894 0.84001 1.42704 0.90555 1.44969 1.02796 1.00795 1.86707 1.21809 0.83836 0.95533 0.96101 1.22640 0.96691 0.94701 1.00897 1.21464 0.96304 0.95177 0.94499 1.22660 1.02903 0.92156 0.96641 1.22915 1.00578 0.99862 0.80036 1.48552 1.46825 1.32105 1.06735 1.18433 0.81555 0.82020 0.82109 1.90721 1.59419 1.66542 1.31130 1.19473 1.02265 1.01018 0.95576 1.20599 0.95401 0.95537 0.97285 1.19828 1.00238 0.98952 0.96276 1.18626 0.94120 0.93007 0.95226 1.41911 1.36041 1.32453 1.08224 0.72895 1.22559 1.00945 1.01237 0.81616 1.22104 1.02198 1.00533 0.99042 1.19573 1.00854 0.99989 0.94170 1.22369 0.93751 0.93060 0.98804 1.21906 0.93712 0.86645 0.96893 1.21191 0.94306 0.84541 0.97232 0.94319 0.90843 1.00579 0.89488 0.89749 0.87319 0.87839 0.87238 0.89366 0.85947 0.83379 0.76913 0.81315 0.80372 0.94595 0.90193 0.94090 0.98337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 10.10 21.65 0.22 -57.83 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -33.44 3.41 -693.13 -2.37 -35.81 16 10 C 0.15 7.67 5.86 86.93 0.51 8.18 16 11 C -0.11 -3.90 6.06 31.52 0.19 -3.70 16 12 C -0.07 -2.39 0.61 -51.83 -0.03 -2.42 16 13 C -0.11 -2.21 5.98 31.38 0.19 -2.03 16 14 C 0.09 1.79 4.86 86.81 0.42 2.21 16 15 N -0.61 -18.87 3.34 -832.22 -2.78 -21.65 16 16 C 0.57 19.96 7.80 86.73 0.68 20.64 16 17 O -0.60 -26.14 16.67 -3.94 -0.07 -26.21 16 18 C -0.18 -5.10 5.87 -20.09 -0.12 -5.22 16 19 C -0.07 -1.80 9.51 22.30 0.21 -1.59 16 20 C -0.13 -2.63 10.00 22.09 0.22 -2.41 16 21 C 0.10 1.81 7.27 39.19 0.28 2.10 16 22 N -0.58 -5.87 6.05 -187.48 -1.13 -7.00 16 23 H 0.43 1.57 8.96 -92.71 -0.83 0.74 16 24 C 0.06 0.49 11.81 82.98 0.98 1.47 16 25 C -0.21 -2.71 11.09 23.52 0.26 -2.45 16 26 C -0.14 -2.74 6.36 -20.21 -0.13 -2.87 16 27 C -0.06 -1.37 8.64 22.74 0.20 -1.17 16 28 C 0.13 4.60 5.73 86.21 0.49 5.09 16 29 C 0.15 6.45 6.45 86.08 0.56 7.00 16 30 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 31 H 0.07 4.18 5.90 -2.38 -0.01 4.16 16 32 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 33 H 0.09 2.65 7.77 -2.39 -0.02 2.63 16 34 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 35 H 0.11 1.73 8.06 -2.39 -0.02 1.71 16 36 H 0.10 1.91 7.64 -2.39 -0.02 1.90 16 37 H 0.11 1.59 6.80 -2.39 -0.02 1.57 16 38 H 0.09 1.69 6.64 -2.39 -0.02 1.67 16 39 H 0.12 3.45 7.64 -2.91 -0.02 3.43 16 40 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.21 -0.21 8.06 -2.91 -0.02 -0.24 16 42 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.18 3.10 2.74 -8.78 -0.02 3.08 16 44 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 45 H 0.08 2.58 7.80 -2.39 -0.02 2.56 16 46 H 0.04 1.62 7.56 -2.38 -0.02 1.60 16 47 H 0.00 -0.06 7.80 -2.39 -0.02 -0.08 16 Total: -1.00 -84.02 369.91 2.31 -81.71 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.16 Total: 11.48 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.24 Total: 6.18 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -6.06 Total: -122.29 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.07 Total: -26.21 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -84.02 2.31 -81.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041612491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.266 kcal (2) G-P(sol) polarization free energy of solvation -84.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds