Wall clock time and date at job start Sat Apr 11 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48506 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47221 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47068 * 60.00759 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00225 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.47560 * 125.67666 * 0.04399 * 9 7 2 11 11 C 1.55184 * 105.00721 * 203.82278 * 10 9 7 12 12 C 1.53653 * 101.42009 * 324.50908 * 11 10 9 13 13 C 1.53653 * 111.41882 * 272.72956 * 12 11 10 14 14 C 1.55429 * 101.31115 * 204.77193 * 13 12 11 15 15 N 1.47567 * 104.88209 * 35.83125 * 14 13 12 16 16 C 1.34771 * 125.67789 * 156.02879 * 15 14 13 17 17 O 1.21592 * 120.00414 * 184.99219 * 16 15 14 18 18 C 1.47507 * 119.99813 * 4.99780 * 16 15 14 19 19 C 1.39346 * 120.21192 * 36.28982 * 18 16 15 20 20 C 1.38315 * 120.49922 * 180.02562 * 19 18 16 21 21 C 1.37912 * 120.59200 * 0.22153 * 20 19 18 22 22 C 1.39537 * 119.98702 * 359.57180 * 21 20 19 23 23 C 1.46577 * 133.95076 * 180.09831 * 22 21 20 24 24 C 1.34214 * 106.88748 * 180.29082 * 23 22 21 25 25 N 1.36896 * 109.88568 * 0.02562 * 24 23 22 26 26 H 0.97007 * 125.01681 * 179.97438 * 25 24 23 27 27 C 1.37124 * 109.97003 * 359.97438 * 25 24 23 28 28 C 1.47409 * 108.64799 * 335.76529 * 15 14 13 29 29 C 1.47412 * 125.67078 * 180.02562 * 9 7 2 30 30 H 0.96996 * 120.00069 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.33353 * 322.70931 * 10 9 7 32 32 H 1.09005 * 110.33219 * 84.83997 * 10 9 7 33 33 H 1.08995 * 111.03518 * 206.46887 * 11 10 9 34 34 H 1.09001 * 111.02860 * 82.54368 * 11 10 9 35 35 H 1.08991 * 111.03868 * 323.00838 * 13 12 11 36 36 H 1.09003 * 111.03116 * 86.90078 * 13 12 11 37 37 H 1.08999 * 110.48771 * 276.93995 * 14 13 12 38 38 H 1.09005 * 110.30787 * 154.62520 * 14 13 12 39 39 H 1.08002 * 119.74852 * 0.04833 * 19 18 16 40 40 H 1.08005 * 119.70637 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.00404 * 179.69544 * 21 20 19 42 42 H 1.08000 * 126.55223 * 0.32006 * 23 22 21 43 43 H 1.08001 * 125.05059 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.98380 * 121.72063 * 28 15 14 45 45 H 1.08993 * 109.98515 * 242.99191 * 28 15 14 46 46 H 1.08997 * 109.98250 * 58.57495 * 29 9 7 47 47 H 1.09001 * 109.98179 * 297.26655 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1428 -2.5340 -0.0009 11 6 -0.4072 -3.9381 0.6047 12 6 0.7834 -4.7369 0.0522 13 6 0.4708 -5.3243 -1.3328 14 6 1.4440 -6.5354 -1.3770 15 7 1.4773 -7.0456 0.0072 16 6 1.7963 -8.3025 0.3743 17 8 1.7030 -8.6379 1.5393 18 6 2.2586 -9.2713 -0.6374 19 6 3.0624 -8.8508 -1.6952 20 6 3.4989 -9.7541 -2.6474 21 6 3.1425 -11.0840 -2.5686 22 6 2.3420 -11.5304 -1.5165 23 6 1.7944 -12.8363 -1.1381 24 6 1.0825 -12.6501 -0.0156 25 7 1.1305 -11.3326 0.3530 26 1 0.6915 -10.9562 1.1319 27 6 1.8905 -10.6235 -0.5412 28 6 1.1099 -5.9499 0.9224 29 6 1.9328 -3.7313 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.6003 -1.7622 0.6181 32 1 -0.5285 -2.4802 -1.0190 33 1 -1.3523 -4.3468 0.2470 34 1 -0.3845 -3.9049 1.6939 35 1 -0.5677 -5.6494 -1.3946 36 1 0.7023 -4.6093 -2.1223 37 1 2.4386 -6.2144 -1.6865 38 1 1.0646 -7.3011 -2.0538 39 1 3.3470 -7.8118 -1.7718 40 1 4.1217 -9.4143 -3.4616 41 1 3.4846 -11.7802 -3.3201 42 1 1.9369 -13.7699 -1.6620 43 1 0.5510 -13.4246 0.5175 44 1 0.2366 -6.2325 1.5102 45 1 1.9455 -5.7207 1.5835 46 1 2.5729 -3.8507 0.8736 47 1 2.5139 -3.8773 -0.9111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041705310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:55 Heat of formation + Delta-G solvation = 42.680289 kcal Electronic energy + Delta-G solvation = -29207.299005 eV Core-core repulsion = 25355.381990 eV Total energy + Delta-G solvation = -3851.917015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38463 -41.40595 -39.71453 -37.75067 -37.18004 -34.57008 -33.11116 -31.98873 -30.83406 -30.49694 -30.12847 -29.40709 -27.44981 -25.89027 -24.40854 -23.72845 -22.66046 -22.21850 -21.92584 -20.65331 -20.23776 -18.92454 -18.56362 -18.06437 -17.36590 -16.90670 -16.79493 -16.46695 -16.05059 -15.82308 -15.60203 -15.41709 -15.12233 -14.93101 -14.36255 -14.14380 -13.98571 -13.95049 -13.86430 -13.66022 -13.39732 -13.14920 -12.98500 -12.85051 -12.74249 -12.71479 -12.57204 -12.38639 -12.25632 -11.98685 -11.77700 -11.55052 -11.49841 -11.22977 -11.02463 -10.73177 -10.70604 -9.80029 -9.22491 -8.87084 -8.70630 -7.76843 -5.20322 -0.22133 0.64333 1.47231 1.47732 1.48077 1.57953 1.82107 1.97798 2.25799 2.49688 2.89948 3.25512 3.35987 3.50920 3.60464 3.63864 3.79304 3.89635 4.03274 4.10059 4.21500 4.22617 4.30125 4.33124 4.45754 4.56969 4.62279 4.66159 4.68442 4.74280 4.82641 4.86114 4.92354 4.97828 5.01125 5.03681 5.06675 5.18768 5.26915 5.31367 5.39452 5.47965 5.55807 5.65629 5.76348 5.80018 5.83554 6.15391 6.31893 6.37408 6.58609 6.95786 7.12078 7.78810 8.42877 9.25251 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.002387 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.048652 B =11725.449658 C =12217.171376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.625 5.625 10 C 0.159 3.841 11 C -0.117 4.117 12 C -0.071 4.071 13 C -0.108 4.108 14 C 0.103 3.897 15 N -0.607 5.607 16 C 0.571 3.429 17 O -0.589 6.589 18 C -0.167 4.167 19 C -0.062 4.062 20 C -0.157 4.157 21 C -0.042 4.042 22 C -0.139 4.139 23 C -0.211 4.211 24 C 0.049 3.951 25 N -0.594 5.594 26 H 0.419 0.581 27 C 0.116 3.884 28 C 0.132 3.868 29 C 0.151 3.849 30 H 0.246 0.754 31 H 0.068 0.932 32 H -0.004 1.004 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.175 0.825 43 H 0.207 0.793 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -26.605 -6.807 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.351 5.351 10 C 0.035 3.965 11 C -0.156 4.156 12 C -0.072 4.072 13 C -0.146 4.146 14 C -0.018 4.018 15 N -0.338 5.338 16 C 0.363 3.637 17 O -0.471 6.471 18 C -0.173 4.173 19 C -0.082 4.082 20 C -0.175 4.175 21 C -0.061 4.061 22 C -0.144 4.144 23 C -0.235 4.235 24 C -0.076 4.076 25 N -0.196 5.196 26 H 0.257 0.743 27 C 0.005 3.995 28 C 0.009 3.991 29 C 0.026 3.974 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.014 0.986 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.192 0.808 43 H 0.223 0.777 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.036 0.964 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.284 -26.628 -6.065 27.405 hybrid contribution 0.064 1.674 0.824 1.867 sum 2.347 -24.954 -5.241 25.606 Atomic orbital electron populations 1.70055 1.06110 1.24889 1.58764 1.25588 0.96625 1.00826 1.02892 0.85016 0.78095 0.79567 0.76697 1.19236 1.21835 1.22039 1.19459 0.90946 0.83772 1.42220 0.90316 1.44913 1.02728 1.00676 1.86817 1.21716 0.83892 0.94154 0.96783 1.22720 0.97006 0.95983 0.99881 1.21374 0.96264 0.92992 0.96545 1.22672 1.00191 0.96271 0.95480 1.22793 1.00581 0.96345 0.82108 1.48592 1.66589 1.09036 1.09624 1.18332 0.76615 0.80909 0.87831 1.90716 1.56822 1.78709 1.20891 1.18778 1.08414 0.90258 0.99807 1.21446 0.94336 1.01080 0.91320 1.21168 1.03115 0.92733 1.00529 1.21112 0.93321 0.96165 0.95466 1.19648 1.03434 0.94101 0.97174 1.22082 1.04957 0.96813 0.99658 1.22577 1.02003 0.84963 0.98064 1.42056 1.44394 1.08291 1.24832 0.74319 1.18246 0.96604 0.91894 0.92738 1.21700 1.00113 0.85032 0.92219 1.21261 0.93869 0.84360 0.97948 0.94374 0.91415 0.98624 0.89383 0.92179 0.89316 0.89607 0.89622 0.88315 0.83982 0.82363 0.82688 0.80802 0.77667 0.91155 0.92337 0.96403 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.07 10.10 21.65 0.22 -55.85 16 2 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 3 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.23 -13.07 10.28 84.03 0.86 -12.20 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -31.59 3.41 -693.03 -2.36 -33.95 16 10 C 0.16 7.64 5.83 86.93 0.51 8.15 16 11 C -0.12 -4.22 5.93 31.56 0.19 -4.04 16 12 C -0.07 -2.28 0.61 -51.87 -0.03 -2.31 16 13 C -0.11 -2.81 5.87 31.65 0.19 -2.62 16 14 C 0.10 2.28 5.18 87.01 0.45 2.73 16 15 N -0.61 -16.75 3.34 -816.12 -2.73 -19.48 16 16 C 0.57 17.24 7.50 86.69 0.65 17.89 16 17 O -0.59 -21.42 16.54 -4.01 -0.07 -21.49 16 18 C -0.17 -4.22 5.43 -20.02 -0.11 -4.33 16 19 C -0.06 -1.23 8.15 22.55 0.18 -1.05 16 20 C -0.16 -2.39 10.00 22.21 0.22 -2.17 16 21 C -0.04 -0.66 10.09 22.51 0.23 -0.43 16 22 C -0.14 -2.76 6.37 -20.21 -0.13 -2.89 16 23 C -0.21 -3.20 11.09 23.53 0.26 -2.94 16 24 C 0.05 0.71 11.82 82.98 0.98 1.69 16 25 N -0.59 -12.48 5.95 -186.98 -1.11 -13.60 16 26 H 0.42 8.91 8.34 -92.70 -0.77 8.14 16 27 C 0.12 2.81 6.87 39.44 0.27 3.08 16 28 C 0.13 4.05 6.14 86.14 0.53 4.58 16 29 C 0.15 6.02 6.39 86.14 0.55 6.57 16 30 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.07 3.77 5.89 -2.39 -0.01 3.76 16 32 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.09 2.71 7.78 -2.39 -0.02 2.69 16 34 H 0.06 2.20 8.09 -2.39 -0.02 2.18 16 35 H 0.09 2.09 7.82 -2.39 -0.02 2.07 16 36 H 0.09 2.37 7.94 -2.39 -0.02 2.35 16 37 H 0.09 1.71 6.90 -2.39 -0.02 1.69 16 38 H 0.10 1.82 7.26 -2.38 -0.02 1.80 16 39 H 0.14 2.47 5.70 -2.91 -0.02 2.45 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.07 2.16 7.86 -2.39 -0.02 2.15 16 45 H 0.06 1.95 7.42 -2.39 -0.02 1.93 16 46 H 0.02 0.74 7.44 -2.39 -0.02 0.73 16 47 H 0.03 1.27 7.78 -2.39 -0.02 1.25 16 Total: -1.00 -73.59 371.95 2.47 -71.11 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.23 Total: 19.27 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.27 Total: 6.41 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -5.98 Total: -122.88 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.07 Total: -21.49 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -73.59 2.47 -71.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041705310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.795 kcal (2) G-P(sol) polarization free energy of solvation -73.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds