Wall clock time and date at job start Sat Apr 11 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00097 * 2 1 4 4 H 1.48507 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46826 * 299.99340 * 3 2 1 6 6 H 1.48496 * 109.47337 * 59.99814 * 3 2 1 7 7 C 1.38817 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.47169 * 125.59497 * 359.97438 * 9 7 2 11 11 C 1.54660 * 107.35138 * 179.11410 * 10 9 7 12 12 C 1.53313 * 102.71757 * 339.48947 * 11 10 9 13 13 C 1.53301 * 112.22381 * 155.00090 * 12 11 10 14 14 C 1.54663 * 102.71878 * 88.17413 * 13 12 11 15 15 N 1.47169 * 107.34453 * 20.50970 * 14 13 12 16 16 C 1.34784 * 125.58947 * 180.88237 * 15 14 13 17 17 O 1.21646 * 119.99867 * 180.02562 * 16 15 14 18 18 C 1.47058 * 120.00065 * 359.75110 * 16 15 14 19 19 C 1.35864 * 125.43077 * 179.69089 * 18 16 15 20 20 C 1.41591 * 107.72482 * 179.88063 * 19 18 16 21 21 C 1.40101 * 133.37676 * 180.08245 * 20 19 18 22 22 C 1.36437 * 119.83252 * 180.32290 * 21 20 19 23 23 C 1.38947 * 120.61213 * 0.02562 * 22 21 20 24 24 C 1.37669 * 120.64941 * 359.97438 * 23 22 21 25 25 C 1.39231 * 119.80826 * 0.03366 * 24 23 22 26 26 N 1.37481 * 133.17537 * 179.97438 * 25 24 23 27 27 H 0.96991 * 125.61067 * 0.02562 * 26 25 24 28 28 C 1.47784 * 108.81854 * 1.14579 * 15 14 13 29 29 C 1.47788 * 125.59161 * 180.02562 * 9 7 2 30 30 H 0.96998 * 119.99993 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.86848 * 59.67261 * 10 9 7 32 32 H 1.09002 * 109.97935 * 298.61684 * 10 9 7 33 33 H 1.08989 * 110.76288 * 221.18369 * 11 10 9 34 34 H 1.09003 * 110.92225 * 97.86807 * 11 10 9 35 35 H 1.09009 * 110.76195 * 329.87072 * 13 12 11 36 36 H 1.09001 * 110.92476 * 206.56028 * 13 12 11 37 37 H 1.09000 * 109.87171 * 261.07219 * 14 13 12 38 38 H 1.08994 * 109.98305 * 140.01376 * 14 13 12 39 39 H 1.07994 * 126.13647 * 0.02562 * 19 18 16 40 40 H 1.08004 * 120.08279 * 0.30396 * 21 20 19 41 41 H 1.07995 * 119.69316 * 180.02562 * 22 21 20 42 42 H 1.07991 * 119.67106 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.09430 * 180.02562 * 24 23 22 44 44 H 1.09000 * 110.39897 * 96.37031 * 28 15 14 45 45 H 1.08994 * 110.40452 * 218.79058 * 28 15 14 46 46 H 1.08993 * 110.40389 * 83.35619 * 29 9 7 47 47 H 1.09002 * 110.39935 * 320.93974 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2127 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1392 -2.5315 0.0028 11 6 -0.4544 -4.0455 -0.0191 12 6 0.8469 -4.6535 -0.5552 13 6 1.0310 -6.1102 -0.1146 14 6 0.3032 -6.8976 -1.2292 15 7 0.2145 -6.0150 -2.4036 16 6 -0.3673 -6.3286 -3.5783 17 8 -0.3821 -5.5179 -4.4852 18 6 -0.9788 -7.6528 -3.7657 19 6 -1.5975 -8.0817 -4.8967 20 6 -2.0426 -9.4064 -4.6686 21 6 -2.7284 -10.3401 -5.4565 22 6 -3.0310 -11.5681 -4.9448 23 6 -2.6657 -11.9033 -3.6468 24 6 -1.9914 -11.0032 -2.8528 25 6 -1.6714 -9.7436 -3.3525 26 7 -1.0216 -8.6566 -2.8174 27 1 -0.6532 -8.6034 -1.9218 28 6 0.8734 -4.7310 -2.0857 29 6 1.9362 -3.7339 0.0028 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5590 -2.0529 -0.8819 32 1 -0.5570 -2.0791 0.9022 33 1 -1.2856 -4.2574 -0.6915 34 1 -0.6679 -4.4132 0.9846 35 1 0.5589 -6.2840 0.8525 36 1 2.0875 -6.3760 -0.0804 37 1 -0.6975 -7.1724 -0.8958 38 1 0.8687 -7.7945 -1.4817 39 1 -1.7246 -7.5150 -5.8071 40 1 -3.0170 -10.0883 -6.4664 41 1 -3.5592 -12.2862 -5.5543 42 1 -2.9133 -12.8795 -3.2569 43 1 -1.7115 -11.2733 -1.8453 44 1 1.9004 -4.7304 -2.4509 45 1 0.3151 -3.9003 -2.5174 46 1 2.2008 -4.0302 1.0178 47 1 2.8156 -3.7527 -0.6410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041820689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:07 Heat of formation + Delta-G solvation = 46.896106 kcal Electronic energy + Delta-G solvation = -29073.508732 eV Core-core repulsion = 25221.774528 eV Total energy + Delta-G solvation = -3851.734204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.73316 -41.37831 -39.73562 -37.73859 -37.34157 -34.57948 -33.17477 -32.36071 -30.90089 -30.71678 -29.98994 -29.71339 -27.55255 -26.14384 -24.37129 -23.97236 -22.75239 -22.18507 -21.96667 -20.93622 -20.31328 -18.96804 -18.45132 -18.34467 -17.25859 -16.87487 -16.78449 -16.63965 -16.11141 -15.75303 -15.62758 -15.24739 -15.10052 -14.92813 -14.66589 -14.50677 -14.40693 -14.01940 -13.87697 -13.79157 -13.46871 -13.10432 -13.04256 -12.87315 -12.69460 -12.59292 -12.55282 -12.51429 -12.00443 -11.89702 -11.80337 -11.63626 -11.47553 -11.40342 -11.29050 -10.91805 -10.73048 -9.93265 -9.23737 -8.90230 -8.77434 -7.86102 -5.21120 -0.27360 0.68738 1.04011 1.43492 1.45082 1.54907 1.59540 1.98564 2.16520 2.48094 2.97337 3.20484 3.33811 3.39287 3.60119 3.62059 3.74459 3.76952 4.04613 4.09710 4.16922 4.20868 4.25482 4.36476 4.42074 4.47526 4.54440 4.59089 4.64392 4.71469 4.74642 4.85527 4.91237 4.92630 4.95087 4.99223 5.11829 5.15680 5.21935 5.31132 5.45307 5.49996 5.55673 5.63547 5.66205 5.71537 5.75460 6.13716 6.18227 6.26431 6.42169 6.83105 7.08861 7.76955 8.40617 9.24531 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027857 B = 0.002326 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.884547 B =12036.595774 C =12502.782992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.086 0.914 9 N -0.628 5.628 10 C 0.187 3.813 11 C -0.112 4.112 12 C -0.073 4.073 13 C -0.100 4.100 14 C 0.084 3.916 15 N -0.611 5.611 16 C 0.589 3.411 17 O -0.572 6.572 18 C 0.010 3.990 19 C -0.120 4.120 20 C -0.145 4.145 21 C -0.075 4.075 22 C -0.149 4.149 23 C -0.084 4.084 24 C -0.138 4.138 25 C 0.101 3.899 26 N -0.570 5.570 27 H 0.430 0.570 28 C 0.135 3.865 29 C 0.148 3.852 30 H 0.244 0.756 31 H -0.003 1.003 32 H 0.007 0.993 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.047 0.953 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -29.863 -2.615 30.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.265 4.265 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.104 0.896 9 N -0.354 5.354 10 C 0.062 3.938 11 C -0.150 4.150 12 C -0.074 4.074 13 C -0.138 4.138 14 C -0.037 4.037 15 N -0.343 5.343 16 C 0.379 3.621 17 O -0.452 6.452 18 C -0.100 4.100 19 C -0.148 4.148 20 C -0.149 4.149 21 C -0.094 4.094 22 C -0.168 4.168 23 C -0.103 4.103 24 C -0.159 4.159 25 C -0.009 4.009 26 N -0.180 5.180 27 H 0.276 0.724 28 C 0.013 3.987 29 C 0.023 3.977 30 H 0.053 0.947 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.176 0.824 43 H 0.166 0.834 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.341 -29.166 -2.978 29.507 hybrid contribution 0.318 2.135 0.026 2.159 sum -3.023 -27.030 -2.952 27.358 Atomic orbital electron populations 1.70210 1.06401 1.24999 1.58752 1.25673 0.96580 1.01176 1.03031 0.85029 0.78380 0.79578 0.76497 1.18612 1.22498 1.21882 1.19515 0.91085 0.83686 1.42155 0.89597 1.44902 1.02156 1.01328 1.87048 1.20916 0.83983 0.91794 0.97114 1.22485 0.96099 0.95176 1.01263 1.21495 0.96542 0.96646 0.92751 1.22450 1.02979 0.89925 0.98447 1.22638 1.02070 0.93987 0.85049 1.48613 1.55590 1.17152 1.12969 1.17225 0.77819 0.85668 0.81365 1.90838 1.61030 1.50920 1.42389 1.19711 1.08506 0.89487 0.92278 1.21050 1.00624 0.95193 0.97904 1.18439 1.06050 0.94992 0.95448 1.20686 0.96209 0.92857 0.99616 1.21026 1.02383 0.96657 0.96734 1.21346 0.95677 0.99761 0.93516 1.20447 1.03423 0.90054 1.01955 1.18731 0.98184 0.90331 0.93655 1.42520 1.49962 1.10618 1.14940 0.72445 1.21838 0.96915 0.84617 0.95367 1.21460 0.94259 0.83632 0.98363 0.94650 0.98505 0.97472 0.92271 0.89187 0.86753 0.87780 0.89496 0.88402 0.83406 0.84735 0.83347 0.82406 0.83382 0.90998 0.94009 0.93548 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 10.30 21.65 0.22 -59.05 16 2 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.20 10.28 84.03 0.86 -12.34 16 8 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.63 -31.75 3.41 -693.59 -2.37 -34.12 16 10 C 0.19 9.36 5.38 86.82 0.47 9.82 16 11 C -0.11 -3.92 5.92 31.26 0.19 -3.73 16 12 C -0.07 -2.18 0.62 -51.86 -0.03 -2.21 16 13 C -0.10 -1.74 5.97 31.26 0.19 -1.55 16 14 C 0.08 1.41 5.09 86.82 0.44 1.85 16 15 N -0.61 -17.03 3.34 -817.32 -2.73 -19.76 16 16 C 0.59 19.13 7.83 86.56 0.68 19.81 16 17 O -0.57 -23.88 17.12 -4.18 -0.07 -23.95 16 18 C 0.01 0.26 6.82 39.91 0.27 0.53 16 19 C -0.12 -3.14 10.53 22.55 0.24 -2.90 16 20 C -0.15 -3.18 6.16 -21.36 -0.13 -3.31 16 21 C -0.08 -1.26 10.06 22.30 0.22 -1.04 16 22 C -0.15 -1.82 9.97 22.02 0.22 -1.60 16 23 C -0.08 -0.89 10.01 22.31 0.22 -0.66 16 24 C -0.14 -1.79 10.08 22.37 0.23 -1.57 16 25 C 0.10 1.92 7.25 39.14 0.28 2.20 16 26 N -0.57 -10.77 5.68 -177.18 -1.01 -11.77 16 27 H 0.43 5.58 4.78 -92.71 -0.44 5.14 16 28 C 0.13 4.56 5.87 86.22 0.51 5.06 16 29 C 0.15 5.45 6.28 86.16 0.54 5.99 16 30 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.00 -0.20 7.39 -2.39 -0.02 -0.21 16 32 H 0.01 0.40 7.49 -2.39 -0.02 0.38 16 33 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 34 H 0.09 2.66 7.82 -2.39 -0.02 2.64 16 35 H 0.11 1.49 7.78 -2.38 -0.02 1.47 16 36 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 37 H 0.09 1.18 7.09 -2.39 -0.02 1.16 16 38 H 0.10 1.11 7.16 -2.39 -0.02 1.09 16 39 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.16 0.67 8.06 -2.92 -0.02 0.64 16 43 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.07 2.40 7.85 -2.39 -0.02 2.38 16 45 H 0.04 1.80 7.95 -2.39 -0.02 1.78 16 46 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 47 H 0.05 1.65 7.80 -2.39 -0.02 1.63 16 Total: -1.00 -80.14 374.05 2.48 -77.66 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.55 Total: 11.47 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 5.86 Total: 10.62 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -5.88 Total: -124.71 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.07 Total: -23.95 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -80.14 2.48 -77.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041820689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.556 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds