Wall clock time and date at job start Sat Apr 11 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47000 * 239.99314 * 3 2 1 5 5 H 1.48492 * 109.47491 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46899 * 120.00115 * 3 2 1 7 7 C 1.38811 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40070 * 0.02711 * 9 7 2 11 11 C 1.55296 * 107.04593 * 184.98022 * 10 9 7 12 12 C 1.53703 * 101.81648 * 22.44071 * 11 10 9 13 13 H 1.08995 * 111.11182 * 78.60617 * 12 11 10 14 14 C 1.51981 * 114.99761 * 206.55591 * 12 11 10 15 15 C 1.53501 * 107.36750 * 175.28823 * 14 12 11 16 16 N 1.46597 * 110.93283 * 308.44283 * 15 14 12 17 17 C 1.34778 * 119.75185 * 227.68510 * 16 15 14 18 18 O 1.21582 * 119.99834 * 183.47562 * 17 16 15 19 19 C 1.47657 * 120.00370 * 3.48270 * 17 16 15 20 20 C 1.40202 * 119.97876 * 129.99739 * 19 17 16 21 21 C 1.36312 * 120.67138 * 180.02562 * 20 19 17 22 22 C 1.39373 * 120.23913 * 359.97438 * 21 20 19 23 23 N 1.37396 * 133.25231 * 180.02562 * 22 21 20 24 24 H 0.96994 * 125.00540 * 359.97438 * 23 22 21 25 25 C 1.36860 * 109.98021 * 179.75901 * 23 22 21 26 26 C 1.34199 * 109.96164 * 0.44604 * 25 23 22 27 27 C 1.40874 * 119.63423 * 0.02562 * 22 21 20 28 28 C 1.39150 * 119.96917 * 310.01979 * 19 17 16 29 29 C 1.47792 * 120.49282 * 47.40533 * 16 15 14 30 30 C 1.45507 * 126.39823 * 179.97438 * 9 7 2 31 31 H 1.09000 * 109.56469 * 265.86642 * 30 9 7 32 32 H 0.97007 * 119.99887 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.91835 * 304.32661 * 10 9 7 34 34 H 1.09000 * 109.91849 * 65.62787 * 10 9 7 35 35 H 1.08993 * 110.96460 * 140.57406 * 11 10 9 36 36 H 1.09006 * 110.95581 * 264.31467 * 11 10 9 37 37 H 1.08999 * 109.88819 * 294.87020 * 14 12 11 38 38 H 1.08997 * 109.89142 * 55.90444 * 14 12 11 39 39 H 1.09000 * 109.18392 * 188.01579 * 15 14 12 40 40 H 1.08994 * 109.05178 * 68.77963 * 15 14 12 41 41 H 1.07997 * 119.66262 * 0.04488 * 20 19 17 42 42 H 1.08003 * 119.88408 * 180.02562 * 21 20 19 43 43 H 1.07998 * 125.02317 * 180.26826 * 25 23 22 44 44 H 1.07993 * 126.54280 * 179.83291 * 26 25 23 45 45 H 1.08005 * 120.30657 * 0.02562 * 28 19 17 46 46 H 1.09006 * 110.06422 * 68.20956 * 29 16 15 47 47 H 1.08993 * 110.07269 * 189.78040 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1468 -2.5531 -0.0006 11 6 -0.4345 -4.0737 0.1288 12 6 0.8676 -4.5875 0.7637 13 1 0.8903 -4.3820 1.8339 14 6 1.1971 -6.0411 0.4666 15 6 2.5747 -6.3328 1.0776 16 7 3.5599 -5.3357 0.6482 17 6 4.7630 -5.7374 0.1925 18 8 5.6062 -4.9136 -0.1051 19 6 5.0570 -7.1778 0.0545 20 6 5.5870 -7.6728 -1.1454 21 6 5.8632 -8.9999 -1.2884 22 6 5.6215 -9.8842 -0.2386 23 7 5.7945 -11.2392 -0.0902 24 1 6.1476 -11.8329 -0.7711 25 6 5.3998 -11.6267 1.1616 26 6 4.9572 -10.5643 1.8518 27 6 5.0892 -9.3992 0.9722 28 6 4.8074 -8.0429 1.1154 29 6 3.2413 -3.8937 0.7056 30 6 1.9080 -3.7214 0.0005 31 1 1.9863 -4.0855 -1.0239 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5809 -2.0198 0.8452 34 1 -0.5622 -2.1747 -0.9345 35 1 -1.2860 -4.2551 0.7845 36 1 -0.5952 -4.5248 -0.8505 37 1 0.4457 -6.6908 0.9153 38 1 1.2297 -6.2012 -0.6111 39 1 2.9044 -7.3225 0.7615 40 1 2.4935 -6.3123 2.1643 41 1 5.7786 -6.9956 -1.9646 42 1 6.2716 -9.3675 -2.2182 43 1 5.4361 -12.6385 1.5375 44 1 4.5805 -10.5665 2.8639 45 1 4.3985 -7.6661 2.0413 46 1 3.1605 -3.5696 1.7432 47 1 4.0125 -3.3195 0.1922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042205413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:38 Heat of formation + Delta-G solvation = 65.291811 kcal Electronic energy + Delta-G solvation = -29470.141754 eV Core-core repulsion = 25619.205248 eV Total energy + Delta-G solvation = -3850.936506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55493 -40.13870 -38.31491 -36.63336 -35.32929 -32.86616 -32.32411 -31.22940 -30.39445 -29.09400 -28.90555 -28.23983 -24.84252 -24.30944 -23.10091 -22.23589 -22.04521 -21.11547 -20.07609 -19.69614 -18.96997 -18.30865 -17.19109 -16.45967 -16.36606 -15.68771 -15.12199 -14.80603 -14.67382 -14.42099 -14.31087 -14.17229 -13.91253 -13.73294 -13.40740 -13.18897 -12.95276 -12.86361 -12.61352 -12.50995 -12.18687 -11.82890 -11.77596 -11.42077 -11.26945 -11.08677 -10.87246 -10.74313 -10.68602 -10.12990 -10.05922 -9.93106 -9.78090 -9.66472 -9.55276 -9.41453 -8.58010 -8.48289 -8.31199 -7.99367 -6.80873 -5.67342 -3.00874 0.83723 1.16330 2.43536 2.80433 2.89252 3.20775 3.46363 3.50118 3.52071 3.71788 4.39153 4.51096 4.55526 4.66077 4.83106 4.99173 5.04814 5.07027 5.17334 5.20201 5.32385 5.44404 5.48837 5.60248 5.65146 5.68140 5.75196 5.83115 5.84549 5.96638 6.07607 6.10825 6.14725 6.20886 6.23760 6.29136 6.38592 6.43310 6.44494 6.55640 6.62276 6.76810 6.81312 6.85289 7.11905 7.17494 7.59640 7.62870 7.68128 7.85500 8.27662 8.40501 9.23800 9.86759 10.53675 11.44979 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002745 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.837713 B =10196.343773 C =11010.184300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.100 3.900 16 N -0.599 5.599 17 C 0.558 3.442 18 O -0.538 6.538 19 C -0.145 4.145 20 C -0.049 4.049 21 C -0.135 4.135 22 C 0.110 3.890 23 N -0.595 5.595 24 H 0.415 0.585 25 C 0.045 3.955 26 C -0.196 4.196 27 C -0.118 4.118 28 C -0.036 4.036 29 C 0.117 3.883 30 C 0.156 3.844 31 H 0.024 0.976 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.171 0.829 44 H 0.149 0.851 45 H 0.131 0.869 46 H 0.071 0.929 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -26.493 2.095 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.158 4.158 15 C -0.023 4.023 16 N -0.331 5.331 17 C 0.346 3.654 18 O -0.416 6.416 19 C -0.149 4.149 20 C -0.069 4.069 21 C -0.155 4.155 22 C 0.001 3.999 23 N -0.198 5.198 24 H 0.252 0.748 25 C -0.081 4.081 26 C -0.220 4.220 27 C -0.123 4.123 28 C -0.055 4.055 29 C -0.005 4.005 30 C 0.047 3.953 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.188 0.812 44 H 0.166 0.834 45 H 0.149 0.851 46 H 0.089 0.911 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.250 -25.871 1.886 26.934 hybrid contribution 0.499 0.528 -0.292 0.783 sum 7.750 -25.344 1.595 26.550 Atomic orbital electron populations 1.69939 1.04882 1.25128 1.57061 1.24776 0.95675 0.97621 1.02213 0.86222 0.78472 0.83215 0.78040 1.21128 1.21668 1.21093 1.19009 0.90431 0.82286 1.43824 0.90301 1.44165 1.01648 0.99189 1.86691 1.21541 0.83683 0.88505 1.00937 1.22728 0.96035 0.99639 0.99230 1.22289 0.97369 0.93496 1.00180 0.90467 1.21729 0.95413 0.97317 1.01295 1.21935 0.89249 0.92140 0.98978 1.48209 1.13760 1.07863 1.63299 1.18302 0.82116 0.87928 0.77053 1.90792 1.46145 1.54330 1.50318 1.19655 1.05938 0.93259 0.96037 1.20506 0.95532 0.94324 0.96580 1.19658 1.06174 0.92202 0.97513 1.18397 1.01257 0.83791 0.96408 1.41769 1.57176 1.06543 1.14318 0.74793 1.21821 1.01741 0.99757 0.84772 1.21745 1.09468 0.90531 1.00301 1.19093 1.05403 0.93505 0.94297 1.20730 0.96051 0.90664 0.98033 1.21735 0.99000 0.78246 1.01479 1.20998 0.91072 0.87565 0.95638 0.95901 0.93752 0.92639 0.94484 0.92272 0.92609 0.90917 0.91471 0.89369 0.91760 0.84906 0.85762 0.81227 0.83364 0.85089 0.91075 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 10.44 55.49 0.58 -26.70 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.39 9.88 -15.06 -0.15 -6.54 16 8 H 0.08 2.17 7.41 -52.49 -0.39 1.78 16 9 N -0.59 -15.13 3.35 -162.88 -0.55 -15.67 16 10 C 0.18 4.30 5.45 -1.91 -0.01 4.29 16 11 C -0.14 -2.54 6.54 -25.15 -0.16 -2.71 16 12 C -0.11 -1.96 2.62 -89.50 -0.23 -2.20 16 13 H 0.08 1.37 8.13 -51.93 -0.42 0.95 16 14 C -0.12 -1.60 5.70 -26.99 -0.15 -1.75 16 15 C 0.10 1.28 5.03 -3.73 -0.02 1.26 16 16 N -0.60 -9.78 3.01 -174.15 -0.53 -10.31 16 17 C 0.56 9.53 7.21 -12.41 -0.09 9.44 16 18 O -0.54 -11.27 16.42 5.29 0.09 -11.18 16 19 C -0.14 -1.98 4.94 -104.98 -0.52 -2.50 16 20 C -0.05 -0.61 9.64 -39.54 -0.38 -0.99 16 21 C -0.13 -1.34 10.00 -39.85 -0.40 -1.74 16 22 C 0.11 1.08 7.27 -83.95 -0.61 0.47 16 23 N -0.60 -3.97 6.05 -10.61 -0.06 -4.04 16 24 H 0.42 1.50 8.96 -40.82 -0.37 1.13 16 25 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 26 C -0.20 -1.59 11.09 -37.64 -0.42 -2.01 16 27 C -0.12 -1.26 6.36 -105.16 -0.67 -1.93 16 28 C -0.04 -0.41 7.42 -38.86 -0.29 -0.70 16 29 C 0.12 2.31 5.68 -3.94 -0.02 2.29 16 30 C 0.16 3.28 2.77 -67.80 -0.19 3.09 16 31 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 32 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 1.48 7.21 -51.93 -0.37 1.11 16 34 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 39 H 0.09 1.00 4.70 -51.93 -0.24 0.75 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.36 7.01 -52.48 -0.37 1.00 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.09 2.04 6.78 -51.93 -0.35 1.68 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -34.49 370.11 -11.20 -45.69 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.68 Total: 1.46 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.61 Total: -2.43 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.56 Total: -56.72 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.49 -11.20 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042205413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.983 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds