Wall clock time and date at job start Sat Apr 11 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99602 * 2 1 4 4 H 1.48500 * 109.47246 * 239.99742 * 3 2 1 5 5 H 1.48498 * 109.47540 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47195 * 119.99888 * 3 2 1 7 7 C 1.38811 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99799 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.39514 * 0.03521 * 9 7 2 11 11 C 1.55301 * 107.03915 * 174.96458 * 10 9 7 12 12 C 1.53693 * 101.81481 * 337.55796 * 11 10 9 13 13 H 1.09000 * 111.69518 * 281.16307 * 12 11 10 14 14 C 1.51974 * 115.00902 * 153.46976 * 12 11 10 15 15 C 1.53888 * 107.29588 * 184.55347 * 14 12 11 16 16 N 1.46596 * 110.70477 * 51.81047 * 15 14 12 17 17 C 1.34776 * 119.75055 * 132.25725 * 16 15 14 18 18 O 1.21650 * 120.00236 * 186.54627 * 17 16 15 19 19 C 1.47061 * 120.00184 * 6.54920 * 17 16 15 20 20 C 1.35868 * 125.43007 * 203.45068 * 19 17 16 21 21 C 1.41593 * 107.72542 * 180.02562 * 20 19 17 22 22 C 1.40099 * 133.37631 * 180.02562 * 21 20 19 23 23 C 1.36441 * 119.82987 * 180.02562 * 22 21 20 24 24 C 1.38941 * 120.61280 * 359.96560 * 23 22 21 25 25 C 1.37668 * 120.65107 * 0.02562 * 24 23 22 26 26 C 1.39235 * 119.80937 * 359.97438 * 25 24 23 27 27 N 1.37473 * 133.18012 * 179.97438 * 26 25 24 28 28 H 0.97004 * 125.60607 * 0.27188 * 27 26 25 29 29 C 1.47792 * 120.49532 * 312.52706 * 16 15 14 30 30 C 1.45501 * 126.39667 * 180.02562 * 9 7 2 31 31 H 1.08998 * 109.57225 * 93.41052 * 30 9 7 32 32 H 0.96998 * 120.00567 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.92142 * 294.31028 * 10 9 7 34 34 H 1.08996 * 109.92258 * 55.41795 * 10 9 7 35 35 H 1.08993 * 110.96050 * 219.42170 * 11 10 9 36 36 H 1.09003 * 110.95660 * 95.68583 * 11 10 9 37 37 H 1.09002 * 109.89757 * 65.10438 * 14 12 11 38 38 H 1.09006 * 109.88946 * 303.99907 * 14 12 11 39 39 H 1.08999 * 109.22899 * 291.49645 * 15 14 12 40 40 H 1.08999 * 109.19663 * 172.10757 * 15 14 12 41 41 H 1.08000 * 126.13634 * 0.02747 * 20 19 17 42 42 H 1.08002 * 120.08985 * 359.96945 * 22 21 20 43 43 H 1.07995 * 119.69438 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.67506 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.09609 * 180.02562 * 25 24 23 46 46 H 1.09000 * 110.06276 * 170.20208 * 29 16 15 47 47 H 1.09005 * 110.06365 * 291.76613 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1467 -2.5532 -0.0007 11 6 -0.4340 -4.0738 -0.1305 12 6 0.8691 -4.5874 -0.7633 13 1 0.9017 -4.3903 -1.8348 14 6 1.1982 -6.0410 -0.4663 15 6 2.5787 -6.3323 -1.0807 16 7 3.5611 -5.3355 -0.6443 17 6 4.7637 -5.7372 -0.1875 18 8 5.5364 -4.9259 0.2864 19 6 5.1421 -7.1564 -0.2618 20 6 6.0663 -7.7674 0.5246 21 6 6.1330 -9.1269 0.1346 22 6 6.8899 -10.2192 0.5784 23 6 6.7296 -11.4398 -0.0098 24 6 5.8206 -11.6117 -1.0465 25 6 5.0651 -10.5541 -1.5001 26 6 5.2107 -9.2986 -0.9160 27 7 4.6154 -8.0805 -1.1433 28 1 3.9345 -7.9004 -1.8103 29 6 3.2403 -3.8938 -0.6960 30 6 1.9084 -3.7213 0.0016 31 1 1.9978 -4.0799 1.0270 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5636 -2.1748 0.9326 34 1 -0.5798 -2.0170 -0.8451 35 1 -1.2845 -4.2553 -0.7875 36 1 -0.5962 -4.5249 0.8485 37 1 0.4475 -6.6908 -0.9161 38 1 1.2307 -6.2012 0.6115 39 1 2.5004 -6.3073 -2.1676 40 1 2.9087 -7.3228 -0.7674 41 1 6.6459 -7.3000 1.3069 42 1 7.5992 -10.0951 1.3833 43 1 7.3145 -12.2801 0.3337 44 1 5.7062 -12.5845 -1.5014 45 1 4.3610 -10.6979 -2.3062 46 1 4.0092 -3.3208 -0.1777 47 1 3.1621 -3.5650 -1.7323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042346395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:02 Heat of formation + Delta-G solvation = 74.452579 kcal Electronic energy + Delta-G solvation = -29409.166362 eV Core-core repulsion = 25558.627097 eV Total energy + Delta-G solvation = -3850.539265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94150 -40.02271 -38.30101 -37.00146 -35.55471 -32.99115 -32.41453 -31.40886 -30.35723 -29.46179 -28.88844 -28.44798 -25.04411 -24.58494 -23.14023 -22.53522 -21.99435 -21.20148 -20.28565 -19.86400 -19.41862 -17.72633 -17.51572 -16.64516 -16.06771 -15.93709 -15.45596 -14.86253 -14.67175 -14.62721 -14.37831 -14.29780 -14.03636 -13.90636 -13.46406 -13.36349 -13.14580 -13.02728 -12.78210 -12.38012 -12.02051 -11.91138 -11.86512 -11.56158 -11.36532 -11.16293 -10.99906 -10.86827 -10.76654 -10.21368 -10.12831 -10.06323 -10.01704 -9.91907 -9.68460 -9.54743 -8.67121 -8.62352 -8.45113 -7.99550 -6.89087 -5.74238 -3.08418 0.59263 1.36993 1.97687 2.63802 2.88045 3.29730 3.41456 3.45713 3.47204 3.66475 4.31044 4.43584 4.47833 4.65219 4.75166 4.83700 4.85985 4.97723 5.05081 5.16442 5.22044 5.29663 5.32217 5.48230 5.53966 5.59157 5.68316 5.73126 5.78712 5.81942 5.91430 5.96854 6.02726 6.09300 6.18466 6.26657 6.30056 6.35613 6.41729 6.46044 6.48657 6.61826 6.67103 6.83282 6.97951 7.11841 7.37055 7.51928 7.56908 7.78342 8.09153 8.20516 9.16294 9.79193 10.45373 11.37961 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.002662 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.751462 B =10517.819121 C =11478.029025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.117 4.117 15 C 0.087 3.913 16 N -0.601 5.601 17 C 0.577 3.423 18 O -0.519 6.519 19 C 0.030 3.970 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.061 4.061 23 C -0.151 4.151 24 C -0.092 4.092 25 C -0.132 4.132 26 C 0.105 3.895 27 N -0.580 5.580 28 H 0.422 0.578 29 C 0.116 3.884 30 C 0.156 3.844 31 H 0.025 0.975 32 H 0.253 0.747 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.155 0.845 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.096 0.904 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 -23.971 -3.651 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.156 4.156 15 C -0.036 4.036 16 N -0.335 5.335 17 C 0.364 3.636 18 O -0.394 6.394 19 C -0.080 4.080 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.080 4.080 23 C -0.170 4.170 24 C -0.111 4.111 25 C -0.152 4.152 26 C -0.004 4.004 27 N -0.189 5.189 28 H 0.265 0.735 29 C -0.006 4.006 30 C 0.047 3.953 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.173 0.827 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.114 0.886 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.760 -23.121 -3.496 24.341 hybrid contribution -0.038 0.941 -0.385 1.018 sum 6.722 -22.179 -3.881 23.498 Atomic orbital electron populations 1.69927 1.04905 1.25255 1.56795 1.24784 0.95686 0.97679 1.02009 0.86214 0.78491 0.83124 0.78063 1.21091 1.21611 1.21042 1.18998 0.90421 0.82238 1.44205 0.90287 1.44153 1.01633 0.99089 1.86733 1.21556 0.83649 0.88430 1.01105 1.22711 0.95831 0.99686 0.99281 1.22274 0.97644 0.93153 1.00197 0.90405 1.21783 0.94562 0.97777 1.01460 1.22186 0.90427 0.91813 0.99188 1.48218 1.13545 1.08322 1.63387 1.17324 0.82102 0.85615 0.78599 1.90862 1.51319 1.52736 1.44487 1.20227 1.00736 0.90021 0.96968 1.20905 0.99485 0.92176 1.01598 1.18225 1.00410 0.94330 0.99125 1.20423 0.97556 0.91232 0.98774 1.20626 1.00699 0.97321 0.98379 1.20858 0.95612 0.97928 0.96728 1.20066 1.03109 0.89897 1.02143 1.18413 0.96666 0.87012 0.98347 1.42749 1.36537 1.06891 1.32762 0.73496 1.21738 0.99546 0.77543 1.01736 1.20899 0.90850 0.87805 0.95750 0.95801 0.93665 0.94380 0.92524 0.92173 0.92483 0.90669 0.91134 0.91487 0.89712 0.82727 0.85767 0.85967 0.85666 0.86049 0.88592 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.43 55.49 0.58 -26.19 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.33 9.87 -15.06 -0.15 -6.48 16 8 H 0.08 2.12 7.41 -52.49 -0.39 1.73 16 9 N -0.59 -14.68 3.35 -163.14 -0.55 -15.23 16 10 C 0.18 4.17 5.46 -1.91 -0.01 4.16 16 11 C -0.14 -2.42 6.54 -25.15 -0.16 -2.58 16 12 C -0.11 -1.84 2.62 -89.50 -0.23 -2.07 16 13 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 14 C -0.12 -1.44 5.72 -26.79 -0.15 -1.59 16 15 C 0.09 0.98 4.95 -3.53 -0.02 0.97 16 16 N -0.60 -9.10 3.02 -174.40 -0.53 -9.62 16 17 C 0.58 9.30 7.60 -12.68 -0.10 9.20 16 18 O -0.52 -10.26 16.30 5.23 0.09 -10.18 16 19 C 0.03 0.39 6.25 -82.29 -0.51 -0.12 16 20 C -0.12 -1.47 10.61 -39.15 -0.42 -1.88 16 21 C -0.12 -1.33 6.16 -106.93 -0.66 -1.99 16 22 C -0.06 -0.57 10.06 -39.53 -0.40 -0.97 16 23 C -0.15 -1.19 9.97 -39.97 -0.40 -1.59 16 24 C -0.09 -0.69 10.01 -39.53 -0.40 -1.09 16 25 C -0.13 -1.11 10.08 -39.42 -0.40 -1.51 16 26 C 0.11 1.11 7.25 -83.98 -0.61 0.50 16 27 N -0.58 -6.04 4.78 -7.36 -0.04 -6.08 16 28 H 0.42 3.44 6.29 -40.82 -0.26 3.18 16 29 C 0.12 2.15 5.67 -4.17 -0.02 2.13 16 30 C 0.16 3.14 2.74 -68.03 -0.19 2.96 16 31 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 34 H 0.06 1.47 7.19 -51.93 -0.37 1.10 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 39 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.09 0.82 4.44 -51.93 -0.23 0.59 16 41 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.10 2.02 6.73 -51.93 -0.35 1.67 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -32.49 368.93 -11.44 -43.93 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.61 Total: 2.80 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -4.92 Total: -2.19 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.53 Total: -57.12 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.49 -11.44 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042346395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.381 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds