Wall clock time and date at job start Sat Apr 11 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99602 * 2 1 4 4 H 1.48500 * 109.47246 * 239.99742 * 3 2 1 5 5 H 1.48498 * 109.47540 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47195 * 119.99888 * 3 2 1 7 7 C 1.38811 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99799 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.39514 * 0.03521 * 9 7 2 11 11 C 1.55301 * 107.03915 * 174.96458 * 10 9 7 12 12 C 1.53693 * 101.81481 * 337.55796 * 11 10 9 13 13 H 1.09000 * 111.69518 * 281.16307 * 12 11 10 14 14 C 1.51974 * 115.00902 * 153.46976 * 12 11 10 15 15 C 1.53888 * 107.29588 * 184.55347 * 14 12 11 16 16 N 1.46596 * 110.70477 * 51.81047 * 15 14 12 17 17 C 1.34776 * 119.75055 * 132.25725 * 16 15 14 18 18 O 1.21650 * 120.00236 * 186.54627 * 17 16 15 19 19 C 1.47061 * 120.00184 * 6.54920 * 17 16 15 20 20 C 1.35868 * 125.43007 * 203.45068 * 19 17 16 21 21 C 1.41593 * 107.72542 * 180.02562 * 20 19 17 22 22 C 1.40099 * 133.37631 * 180.02562 * 21 20 19 23 23 C 1.36441 * 119.82987 * 180.02562 * 22 21 20 24 24 C 1.38941 * 120.61280 * 359.96560 * 23 22 21 25 25 C 1.37668 * 120.65107 * 0.02562 * 24 23 22 26 26 C 1.39235 * 119.80937 * 359.97438 * 25 24 23 27 27 N 1.37473 * 133.18012 * 179.97438 * 26 25 24 28 28 H 0.97004 * 125.60607 * 0.27188 * 27 26 25 29 29 C 1.47792 * 120.49532 * 312.52706 * 16 15 14 30 30 C 1.45501 * 126.39667 * 180.02562 * 9 7 2 31 31 H 1.08998 * 109.57225 * 93.41052 * 30 9 7 32 32 H 0.96998 * 120.00567 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.92142 * 294.31028 * 10 9 7 34 34 H 1.08996 * 109.92258 * 55.41795 * 10 9 7 35 35 H 1.08993 * 110.96050 * 219.42170 * 11 10 9 36 36 H 1.09003 * 110.95660 * 95.68583 * 11 10 9 37 37 H 1.09002 * 109.89757 * 65.10438 * 14 12 11 38 38 H 1.09006 * 109.88946 * 303.99907 * 14 12 11 39 39 H 1.08999 * 109.22899 * 291.49645 * 15 14 12 40 40 H 1.08999 * 109.19663 * 172.10757 * 15 14 12 41 41 H 1.08000 * 126.13634 * 0.02747 * 20 19 17 42 42 H 1.08002 * 120.08985 * 359.96945 * 22 21 20 43 43 H 1.07995 * 119.69438 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.67506 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.09609 * 180.02562 * 25 24 23 46 46 H 1.09000 * 110.06276 * 170.20208 * 29 16 15 47 47 H 1.09005 * 110.06365 * 291.76613 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1467 -2.5532 -0.0007 11 6 -0.4340 -4.0738 -0.1305 12 6 0.8691 -4.5874 -0.7633 13 1 0.9017 -4.3903 -1.8348 14 6 1.1982 -6.0410 -0.4663 15 6 2.5787 -6.3323 -1.0807 16 7 3.5611 -5.3355 -0.6443 17 6 4.7637 -5.7372 -0.1875 18 8 5.5364 -4.9259 0.2864 19 6 5.1421 -7.1564 -0.2618 20 6 6.0663 -7.7674 0.5246 21 6 6.1330 -9.1269 0.1346 22 6 6.8899 -10.2192 0.5784 23 6 6.7296 -11.4398 -0.0098 24 6 5.8206 -11.6117 -1.0465 25 6 5.0651 -10.5541 -1.5001 26 6 5.2107 -9.2986 -0.9160 27 7 4.6154 -8.0805 -1.1433 28 1 3.9345 -7.9004 -1.8103 29 6 3.2403 -3.8938 -0.6960 30 6 1.9084 -3.7213 0.0016 31 1 1.9978 -4.0799 1.0270 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5636 -2.1748 0.9326 34 1 -0.5798 -2.0170 -0.8451 35 1 -1.2845 -4.2553 -0.7875 36 1 -0.5962 -4.5249 0.8485 37 1 0.4475 -6.6908 -0.9161 38 1 1.2307 -6.2012 0.6115 39 1 2.5004 -6.3073 -2.1676 40 1 2.9087 -7.3228 -0.7674 41 1 6.6459 -7.3000 1.3069 42 1 7.5992 -10.0951 1.3833 43 1 7.3145 -12.2801 0.3337 44 1 5.7062 -12.5845 -1.5014 45 1 4.3610 -10.6979 -2.3062 46 1 4.0092 -3.3208 -0.1777 47 1 3.1621 -3.5650 -1.7323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042346395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:01 Heat of formation + Delta-G solvation = 55.276153 kcal Electronic energy + Delta-G solvation = -29409.997914 eV Core-core repulsion = 25558.627097 eV Total energy + Delta-G solvation = -3851.370818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.82445 -41.26276 -39.71255 -37.78101 -36.99254 -34.73583 -33.21352 -32.97385 -31.62387 -30.54840 -30.02313 -29.73454 -26.62812 -26.09777 -24.17188 -23.79223 -22.84940 -22.08128 -21.84919 -21.31071 -20.60752 -18.85866 -18.51701 -18.31881 -17.21364 -16.94662 -16.83407 -16.36289 -16.06983 -15.78192 -15.53536 -15.27767 -15.20461 -15.02645 -14.69424 -14.52596 -14.46471 -14.08732 -13.88667 -13.80432 -13.60733 -13.17553 -13.12163 -12.78531 -12.63600 -12.58640 -12.45823 -12.20033 -12.06632 -11.80546 -11.79765 -11.58922 -11.46691 -11.26718 -11.08670 -10.88485 -10.74942 -9.91334 -9.21289 -8.94247 -8.76557 -7.88968 -5.24145 -0.23213 0.69597 1.05398 1.42071 1.44688 1.50727 1.59230 1.85077 2.23382 2.46851 2.98592 3.27784 3.29039 3.44240 3.66069 3.75854 3.87266 3.87997 4.10488 4.15869 4.17566 4.22565 4.25506 4.35967 4.40514 4.49419 4.54747 4.59777 4.60860 4.73725 4.75594 4.82291 4.86603 4.93450 5.03228 5.09800 5.16886 5.17156 5.26481 5.43615 5.49449 5.53218 5.57083 5.63547 5.67277 5.73017 5.75841 6.12714 6.16174 6.20214 6.42026 6.85329 7.05333 7.73359 8.40046 9.21664 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.002662 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.751462 B =10517.819121 C =11478.029025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.612 5.612 10 C 0.179 3.821 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.083 0.917 14 C -0.108 4.108 15 C 0.082 3.918 16 N -0.598 5.598 17 C 0.575 3.425 18 O -0.570 6.570 19 C 0.012 3.988 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.076 4.076 23 C -0.149 4.149 24 C -0.085 4.085 25 C -0.137 4.137 26 C 0.102 3.898 27 N -0.568 5.568 28 H 0.433 0.567 29 C 0.129 3.871 30 C 0.147 3.853 31 H 0.004 0.996 32 H 0.248 0.752 33 H -0.002 1.002 34 H 0.026 0.974 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.134 0.866 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.060 0.940 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -28.430 -5.437 29.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.337 5.337 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.114 4.114 13 H 0.101 0.899 14 C -0.146 4.146 15 C -0.039 4.039 16 N -0.330 5.330 17 C 0.364 3.636 18 O -0.450 6.450 19 C -0.097 4.097 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.094 4.094 23 C -0.168 4.168 24 C -0.104 4.104 25 C -0.157 4.157 26 C -0.008 4.008 27 N -0.178 5.178 28 H 0.278 0.722 29 C 0.006 3.994 30 C 0.039 3.961 31 H 0.021 0.979 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.175 0.825 45 H 0.166 0.834 46 H 0.078 0.922 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.695 -27.643 -5.309 28.933 hybrid contribution 0.057 2.169 0.223 2.181 sum 6.752 -25.474 -5.087 26.840 Atomic orbital electron populations 1.70132 1.06044 1.25381 1.58056 1.25550 0.96572 1.00685 1.02568 0.85262 0.77294 0.79332 0.78143 1.20201 1.21608 1.20916 1.19274 0.90619 0.83770 1.43204 0.90710 1.44415 1.02568 1.00197 1.86524 1.21383 0.82830 0.92562 0.97733 1.22582 0.97642 0.94785 1.00872 1.22199 0.94656 0.95035 0.99556 0.89913 1.21782 0.96108 0.95178 1.01581 1.22539 0.88825 0.91500 1.01062 1.48224 1.14262 1.07406 1.63097 1.17738 0.81740 0.86586 0.77546 1.90824 1.52846 1.54419 1.46863 1.19657 1.02299 0.88781 0.98959 1.21037 0.99132 0.93347 1.01396 1.18414 1.01928 0.94044 1.00290 1.20679 0.97820 0.91417 0.99521 1.21018 1.00516 0.97338 0.97893 1.21338 0.94179 0.99059 0.95815 1.20443 1.03737 0.88878 1.02651 1.18714 0.96326 0.87584 0.98215 1.42543 1.36605 1.06291 1.32398 0.72186 1.21310 0.97480 0.79792 1.00849 1.21038 0.93124 0.86435 0.95516 0.97854 0.94290 0.98342 0.95617 0.89246 0.91369 0.86230 0.91942 0.88294 0.87481 0.83500 0.84794 0.83428 0.82476 0.83363 0.92156 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 10.43 21.65 0.23 -57.28 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 3 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.24 -13.78 9.87 84.03 0.83 -12.95 16 8 H 0.08 4.24 7.41 -2.91 -0.02 4.22 16 9 N -0.61 -31.74 3.35 -670.05 -2.24 -33.98 16 10 C 0.18 8.78 5.46 86.85 0.47 9.26 16 11 C -0.12 -4.10 6.54 31.62 0.21 -3.90 16 12 C -0.09 -2.91 2.62 -10.07 -0.03 -2.93 16 13 H 0.08 2.51 8.13 -2.39 -0.02 2.49 16 14 C -0.11 -2.25 5.72 30.56 0.17 -2.08 16 15 C 0.08 1.59 4.95 86.66 0.43 2.02 16 16 N -0.60 -17.91 3.02 -823.92 -2.49 -20.39 16 17 C 0.57 19.03 7.60 86.56 0.66 19.68 16 18 O -0.57 -24.09 16.30 -4.19 -0.07 -24.16 16 19 C 0.01 0.32 6.25 39.91 0.25 0.57 16 20 C -0.12 -3.14 10.61 22.55 0.24 -2.90 16 21 C -0.14 -3.07 6.16 -21.36 -0.13 -3.20 16 22 C -0.08 -1.26 10.06 22.30 0.22 -1.04 16 23 C -0.15 -1.80 9.97 22.02 0.22 -1.58 16 24 C -0.08 -0.88 10.01 22.30 0.22 -0.66 16 25 C -0.14 -1.72 10.08 22.37 0.23 -1.49 16 26 C 0.10 1.87 7.25 39.14 0.28 2.15 16 27 N -0.57 -10.49 4.78 -177.19 -0.85 -11.34 16 28 H 0.43 5.53 6.29 -92.71 -0.58 4.94 16 29 C 0.13 4.95 5.67 85.59 0.49 5.43 16 30 C 0.15 6.06 2.74 45.47 0.12 6.19 16 31 H 0.00 0.18 7.93 -2.39 -0.02 0.16 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.00 -0.09 7.77 -2.39 -0.02 -0.11 16 34 H 0.03 1.39 7.19 -2.39 -0.02 1.38 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.46 7.98 -2.38 -0.02 1.44 16 39 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 40 H 0.11 1.67 4.44 -2.39 -0.01 1.66 16 41 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 45 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.06 2.73 6.73 -2.39 -0.02 2.71 16 47 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -77.70 368.93 2.38 -75.32 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.41 Total: 12.99 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.36 Total: 9.52 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -5.35 Total: -122.99 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.07 Total: -24.16 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -77.70 2.38 -75.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042346395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.597 kcal (2) G-P(sol) polarization free energy of solvation -77.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds