Wall clock time and date at job start Sat Apr 11 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47055 * 269.99728 * 3 2 1 5 5 H 1.48495 * 109.47188 * 29.99518 * 3 2 1 6 6 H 1.48501 * 109.47091 * 149.99658 * 3 2 1 7 7 C 1.38810 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.47552 * 125.85616 * 0.02586 * 9 7 2 11 11 C 1.55062 * 104.84873 * 156.08917 * 10 9 7 12 12 C 1.55057 * 101.27311 * 35.97247 * 11 10 9 13 13 H 1.08997 * 106.68374 * 78.29753 * 12 11 10 14 14 C 1.48858 * 111.54543 * 194.53574 * 12 11 10 15 15 C 1.50601 * 117.91101 * 101.50583 * 14 12 11 16 16 N 1.45236 * 112.83457 * 27.69085 * 15 14 12 17 17 C 1.34773 * 119.34148 * 135.99758 * 16 15 14 18 18 O 1.21645 * 120.00142 * 179.65329 * 17 16 15 19 19 C 1.47056 * 119.99737 * 359.64892 * 17 16 15 20 20 C 1.35876 * 125.42706 * 206.87807 * 19 17 16 21 21 C 1.41590 * 107.72039 * 179.88606 * 20 19 17 22 22 C 1.40108 * 133.37140 * 180.10250 * 21 20 19 23 23 C 1.36437 * 119.82968 * 180.28033 * 22 21 20 24 24 C 1.38948 * 120.61320 * 359.97438 * 23 22 21 25 25 C 1.37673 * 120.64997 * 0.02562 * 24 23 22 26 26 C 1.39228 * 119.80739 * 359.97438 * 25 24 23 27 27 N 1.37479 * 133.17810 * 180.02562 * 26 25 24 28 28 H 0.96998 * 125.60684 * 359.94496 * 27 26 25 29 29 C 1.44671 * 120.74035 * 315.59744 * 16 15 14 30 30 C 1.47622 * 125.85662 * 179.97438 * 9 7 2 31 31 H 1.08997 * 108.10490 * 64.75170 * 30 9 7 32 32 H 0.96994 * 119.99853 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.36238 * 37.24787 * 10 9 7 34 34 H 1.08996 * 110.45709 * 274.98431 * 10 9 7 35 35 H 1.08997 * 111.06416 * 153.98307 * 11 10 9 36 36 H 1.08993 * 111.07353 * 277.95624 * 11 10 9 37 37 H 1.09003 * 107.75495 * 223.64738 * 14 12 11 38 38 H 1.09001 * 107.75278 * 339.41408 * 14 12 11 39 39 H 1.08999 * 108.80799 * 148.54736 * 15 14 12 40 40 H 1.08994 * 108.81204 * 266.81814 * 15 14 12 41 41 H 1.07995 * 126.14060 * 0.02628 * 20 19 17 42 42 H 1.07997 * 120.08925 * 0.29769 * 22 21 20 43 43 H 1.07995 * 119.69414 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.67160 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.09355 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.26901 * 288.40451 * 29 16 15 47 47 H 1.09003 * 108.17324 * 170.05925 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5387 -0.0005 11 6 -0.3973 -3.9426 -0.6076 12 6 0.8021 -4.7422 -0.0363 13 1 0.5540 -4.9824 0.9975 14 6 0.9833 -6.0378 -0.7466 15 6 2.0717 -6.1271 -1.7836 16 7 3.1714 -5.2140 -1.5264 17 6 4.4388 -5.6520 -1.6618 18 8 5.3690 -4.8957 -1.4556 19 6 4.6972 -7.0442 -2.0588 20 6 5.8120 -7.7572 -1.7506 21 6 5.6680 -9.0477 -2.3151 22 6 6.4797 -10.1896 -2.3248 23 6 6.0620 -11.3136 -2.9757 24 6 4.8367 -11.3380 -3.6304 25 6 4.0212 -10.2288 -3.6352 26 6 4.4254 -9.0699 -2.9780 27 7 3.8473 -7.8341 -2.8086 28 1 2.9849 -7.5613 -3.1590 29 6 2.9193 -3.8438 -1.1368 30 6 1.9294 -3.7352 0.0005 31 1 2.4712 -3.8635 0.9376 32 1 -0.4850 0.8400 -0.0004 33 1 -0.6021 -1.7685 -0.6198 34 1 -0.5311 -2.4888 1.0165 35 1 -1.3444 -4.3540 -0.2588 36 1 -0.3639 -3.9106 -1.6966 37 1 1.1757 -6.8044 0.0041 38 1 0.0399 -6.2846 -1.2336 39 1 2.4578 -7.1462 -1.8010 40 1 1.6459 -5.8983 -2.7605 41 1 6.6554 -7.4038 -1.1760 42 1 7.4334 -10.1804 -1.8181 43 1 6.6896 -12.1925 -2.9822 44 1 4.5209 -12.2360 -4.1406 45 1 3.0705 -10.2578 -4.1466 46 1 2.5349 -3.2910 -1.9939 47 1 3.8649 -3.3991 -0.8264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042346403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:15 Heat of formation + Delta-G solvation = 79.673974 kcal Electronic energy + Delta-G solvation = -29484.486897 eV Core-core repulsion = 25634.174049 eV Total energy + Delta-G solvation = -3850.312849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.98214 -40.09741 -38.31458 -37.01710 -35.65567 -33.26279 -32.43042 -31.71498 -30.26497 -29.46097 -28.88583 -28.52698 -25.39281 -24.76348 -23.21481 -22.75827 -22.09191 -21.26793 -20.48555 -20.01399 -18.43022 -17.65827 -17.23696 -16.93239 -16.13169 -15.94075 -15.58425 -15.13136 -14.81359 -14.73438 -14.40299 -14.34457 -14.12117 -13.92658 -13.63922 -13.48161 -13.09053 -12.78769 -12.51962 -12.39960 -11.96590 -11.94262 -11.73837 -11.71588 -11.41863 -11.14988 -11.02636 -10.91643 -10.75798 -10.17481 -10.11610 -10.07187 -10.01667 -9.89138 -9.71904 -9.47424 -8.72262 -8.53359 -8.41773 -7.97816 -6.93260 -5.70280 -3.12586 0.60604 1.37507 1.98958 2.64325 2.94624 3.32334 3.39518 3.45174 3.47229 3.67009 4.33119 4.43279 4.44203 4.63364 4.75754 4.85473 4.85573 4.93115 5.06650 5.16952 5.23675 5.27327 5.36916 5.41508 5.48848 5.54041 5.70530 5.74488 5.79193 5.81719 5.88056 5.96082 6.12625 6.18106 6.20073 6.29348 6.37914 6.40728 6.46549 6.49617 6.53592 6.71112 6.78106 6.84709 6.95977 7.12232 7.42146 7.46134 7.60190 7.79734 8.13148 8.28870 9.16441 9.76446 10.40278 11.33799 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.002688 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.705155 B =10413.282734 C =11352.975233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.150 3.850 11 C -0.141 4.141 12 C -0.091 4.091 13 H 0.062 0.938 14 C -0.110 4.110 15 C 0.088 3.912 16 N -0.587 5.587 17 C 0.573 3.427 18 O -0.519 6.519 19 C 0.032 3.968 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.062 4.062 23 C -0.151 4.151 24 C -0.092 4.092 25 C -0.131 4.131 26 C 0.104 3.896 27 N -0.580 5.580 28 H 0.423 0.577 29 C 0.103 3.897 30 C 0.164 3.836 31 H 0.028 0.972 32 H 0.252 0.748 33 H 0.106 0.894 34 H 0.014 0.986 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.155 0.845 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.072 0.928 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -23.225 -6.819 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.026 3.974 11 C -0.180 4.180 12 C -0.110 4.110 13 H 0.081 0.919 14 C -0.149 4.149 15 C -0.036 4.036 16 N -0.319 5.319 17 C 0.360 3.640 18 O -0.395 6.395 19 C -0.078 4.078 20 C -0.143 4.143 21 C -0.120 4.120 22 C -0.080 4.080 23 C -0.170 4.170 24 C -0.112 4.112 25 C -0.152 4.152 26 C -0.005 4.005 27 N -0.190 5.190 28 H 0.267 0.733 29 C -0.021 4.021 30 C 0.056 3.944 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.173 0.827 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.090 0.910 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.692 -22.397 -6.687 23.840 hybrid contribution -0.160 0.922 -0.091 0.940 sum 4.533 -21.475 -6.779 22.971 Atomic orbital electron populations 1.69806 1.04905 1.24880 1.57373 1.24780 0.95717 0.97734 1.02146 0.86077 0.78654 0.83194 0.77654 1.21520 1.21650 1.20567 1.19083 0.90605 0.82151 1.43392 0.90271 1.44760 1.01728 0.98845 1.86435 1.21960 0.84466 0.92628 0.98367 1.23214 0.95709 0.99102 0.99972 1.20441 0.97211 0.93487 0.99877 0.91913 1.20370 0.98217 0.98249 0.98025 1.21349 0.88856 0.93970 0.99397 1.47069 1.04723 1.13107 1.66958 1.17353 0.83268 0.84932 0.78428 1.90854 1.42843 1.54904 1.50899 1.20207 0.92924 0.92344 1.02277 1.20884 0.97749 0.92120 1.03555 1.18222 0.95383 0.95139 1.03262 1.20419 0.98590 0.91208 0.97816 1.20626 0.97246 0.98405 1.00718 1.20859 0.94137 0.97298 0.98879 1.20068 1.01142 0.91134 1.02815 1.18422 0.94273 0.86958 1.00888 1.42855 1.19282 1.10240 1.46647 0.73327 1.21555 1.01824 0.78998 0.99712 1.19954 0.92035 0.87118 0.95276 0.95420 0.93702 0.87673 0.96784 0.92274 0.92331 0.92283 0.90708 0.89545 0.91944 0.82747 0.85778 0.85974 0.85668 0.86036 0.90980 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.12 55.49 0.56 -25.83 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.12 9.77 -15.06 -0.15 -6.27 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.59 -14.66 3.16 -164.78 -0.52 -15.18 16 10 C 0.15 3.52 5.91 -2.38 -0.01 3.51 16 11 C -0.14 -2.50 6.24 -24.55 -0.15 -2.65 16 12 C -0.09 -1.50 2.63 -92.47 -0.24 -1.74 16 13 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 14 C -0.11 -1.35 5.55 -29.96 -0.17 -1.52 16 15 C 0.09 1.04 5.08 -5.92 -0.03 1.01 16 16 N -0.59 -9.19 3.03 -180.09 -0.55 -9.73 16 17 C 0.57 9.38 7.58 -12.69 -0.10 9.28 16 18 O -0.52 -10.34 16.23 5.24 0.09 -10.26 16 19 C 0.03 0.42 6.24 -82.29 -0.51 -0.09 16 20 C -0.12 -1.49 10.64 -39.15 -0.42 -1.90 16 21 C -0.12 -1.32 6.16 -106.93 -0.66 -1.98 16 22 C -0.06 -0.58 10.06 -39.53 -0.40 -0.97 16 23 C -0.15 -1.20 9.97 -39.97 -0.40 -1.59 16 24 C -0.09 -0.70 10.01 -39.52 -0.40 -1.10 16 25 C -0.13 -1.12 10.08 -39.42 -0.40 -1.51 16 26 C 0.10 1.11 7.25 -83.98 -0.61 0.50 16 27 N -0.58 -6.15 4.75 -7.36 -0.03 -6.19 16 28 H 0.42 3.56 6.26 -40.82 -0.26 3.30 16 29 C 0.10 1.98 5.47 -5.94 -0.03 1.95 16 30 C 0.16 3.35 3.28 -69.14 -0.23 3.12 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.11 2.78 5.91 -51.93 -0.31 2.47 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 38 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 39 H 0.09 0.86 4.12 -51.93 -0.21 0.65 16 40 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 41 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 47 H 0.09 1.90 6.81 -51.93 -0.35 1.55 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -31.99 367.71 -11.49 -43.48 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.56 Total: 3.36 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.99 Total: -2.29 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.54 Total: -56.93 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.99 -11.49 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042346403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.152 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds