Wall clock time and date at job start Sat Apr 11 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47055 * 269.99728 * 3 2 1 5 5 H 1.48495 * 109.47188 * 29.99518 * 3 2 1 6 6 H 1.48501 * 109.47091 * 149.99658 * 3 2 1 7 7 C 1.38810 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.47552 * 125.85616 * 0.02586 * 9 7 2 11 11 C 1.55062 * 104.84873 * 156.08917 * 10 9 7 12 12 C 1.55057 * 101.27311 * 35.97247 * 11 10 9 13 13 H 1.08997 * 106.68374 * 78.29753 * 12 11 10 14 14 C 1.48858 * 111.54543 * 194.53574 * 12 11 10 15 15 C 1.50601 * 117.91101 * 101.50583 * 14 12 11 16 16 N 1.45236 * 112.83457 * 27.69085 * 15 14 12 17 17 C 1.34773 * 119.34148 * 135.99758 * 16 15 14 18 18 O 1.21645 * 120.00142 * 179.65329 * 17 16 15 19 19 C 1.47056 * 119.99737 * 359.64892 * 17 16 15 20 20 C 1.35876 * 125.42706 * 206.87807 * 19 17 16 21 21 C 1.41590 * 107.72039 * 179.88606 * 20 19 17 22 22 C 1.40108 * 133.37140 * 180.10250 * 21 20 19 23 23 C 1.36437 * 119.82968 * 180.28033 * 22 21 20 24 24 C 1.38948 * 120.61320 * 359.97438 * 23 22 21 25 25 C 1.37673 * 120.64997 * 0.02562 * 24 23 22 26 26 C 1.39228 * 119.80739 * 359.97438 * 25 24 23 27 27 N 1.37479 * 133.17810 * 180.02562 * 26 25 24 28 28 H 0.96998 * 125.60684 * 359.94496 * 27 26 25 29 29 C 1.44671 * 120.74035 * 315.59744 * 16 15 14 30 30 C 1.47622 * 125.85662 * 179.97438 * 9 7 2 31 31 H 1.08997 * 108.10490 * 64.75170 * 30 9 7 32 32 H 0.96994 * 119.99853 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.36238 * 37.24787 * 10 9 7 34 34 H 1.08996 * 110.45709 * 274.98431 * 10 9 7 35 35 H 1.08997 * 111.06416 * 153.98307 * 11 10 9 36 36 H 1.08993 * 111.07353 * 277.95624 * 11 10 9 37 37 H 1.09003 * 107.75495 * 223.64738 * 14 12 11 38 38 H 1.09001 * 107.75278 * 339.41408 * 14 12 11 39 39 H 1.08999 * 108.80799 * 148.54736 * 15 14 12 40 40 H 1.08994 * 108.81204 * 266.81814 * 15 14 12 41 41 H 1.07995 * 126.14060 * 0.02628 * 20 19 17 42 42 H 1.07997 * 120.08925 * 0.29769 * 22 21 20 43 43 H 1.07995 * 119.69414 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.67160 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.09355 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.26901 * 288.40451 * 29 16 15 47 47 H 1.09003 * 108.17324 * 170.05925 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5387 -0.0005 11 6 -0.3973 -3.9426 -0.6076 12 6 0.8021 -4.7422 -0.0363 13 1 0.5540 -4.9824 0.9975 14 6 0.9833 -6.0378 -0.7466 15 6 2.0717 -6.1271 -1.7836 16 7 3.1714 -5.2140 -1.5264 17 6 4.4388 -5.6520 -1.6618 18 8 5.3690 -4.8957 -1.4556 19 6 4.6972 -7.0442 -2.0588 20 6 5.8120 -7.7572 -1.7506 21 6 5.6680 -9.0477 -2.3151 22 6 6.4797 -10.1896 -2.3248 23 6 6.0620 -11.3136 -2.9757 24 6 4.8367 -11.3380 -3.6304 25 6 4.0212 -10.2288 -3.6352 26 6 4.4254 -9.0699 -2.9780 27 7 3.8473 -7.8341 -2.8086 28 1 2.9849 -7.5613 -3.1590 29 6 2.9193 -3.8438 -1.1368 30 6 1.9294 -3.7352 0.0005 31 1 2.4712 -3.8635 0.9376 32 1 -0.4850 0.8400 -0.0004 33 1 -0.6021 -1.7685 -0.6198 34 1 -0.5311 -2.4888 1.0165 35 1 -1.3444 -4.3540 -0.2588 36 1 -0.3639 -3.9106 -1.6966 37 1 1.1757 -6.8044 0.0041 38 1 0.0399 -6.2846 -1.2336 39 1 2.4578 -7.1462 -1.8010 40 1 1.6459 -5.8983 -2.7605 41 1 6.6554 -7.4038 -1.1760 42 1 7.4334 -10.1804 -1.8181 43 1 6.6896 -12.1925 -2.9822 44 1 4.5209 -12.2360 -4.1406 45 1 3.0705 -10.2578 -4.1466 46 1 2.5349 -3.2910 -1.9939 47 1 3.8649 -3.3991 -0.8264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042346403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:14 Heat of formation + Delta-G solvation = 61.232119 kcal Electronic energy + Delta-G solvation = -29485.286596 eV Core-core repulsion = 25634.174049 eV Total energy + Delta-G solvation = -3851.112547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.88981 -41.33481 -39.74463 -37.81171 -37.08151 -34.93140 -33.42966 -33.14279 -31.52516 -30.59396 -30.05316 -29.82686 -26.83402 -26.37391 -24.31442 -24.04174 -22.92965 -22.27234 -22.06932 -21.18914 -19.60652 -19.00252 -18.57214 -18.23311 -17.24572 -17.03553 -16.95271 -16.58977 -16.40459 -15.78214 -15.61268 -15.33992 -15.19900 -15.12640 -14.72676 -14.54547 -14.26495 -14.11188 -13.87519 -13.68417 -13.52985 -13.38935 -13.07300 -12.79024 -12.71855 -12.58427 -12.44725 -12.30704 -12.04203 -11.79804 -11.73798 -11.53508 -11.40558 -11.33868 -11.04872 -10.88317 -10.77654 -9.84201 -9.21386 -8.95870 -8.76124 -7.82317 -5.26552 -0.22428 0.69643 1.04903 1.42852 1.43600 1.52623 1.64751 1.82472 2.24725 2.44740 2.98706 3.26560 3.28619 3.48793 3.63160 3.74324 3.76141 3.83046 4.10300 4.15127 4.18402 4.19688 4.24394 4.33265 4.38890 4.49940 4.50368 4.60181 4.69520 4.77963 4.82961 4.85172 4.88814 4.93730 5.02866 5.11373 5.17065 5.28160 5.33405 5.45003 5.48988 5.53013 5.57507 5.65257 5.67460 5.73216 5.79235 6.13467 6.20748 6.27101 6.40417 6.85761 7.07014 7.71984 8.35422 9.19187 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.002688 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.705155 B =10413.282734 C =11352.975233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.060 4.060 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.613 5.613 10 C 0.148 3.852 11 C -0.122 4.122 12 C -0.080 4.080 13 H 0.063 0.937 14 C -0.109 4.109 15 C 0.081 3.919 16 N -0.586 5.586 17 C 0.573 3.427 18 O -0.569 6.569 19 C 0.013 3.987 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.075 4.075 23 C -0.149 4.149 24 C -0.085 4.085 25 C -0.137 4.137 26 C 0.100 3.900 27 N -0.569 5.569 28 H 0.433 0.567 29 C 0.124 3.876 30 C 0.162 3.838 31 H 0.004 0.996 32 H 0.248 0.752 33 H 0.073 0.927 34 H -0.013 1.013 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.055 0.945 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -27.465 -8.554 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.024 3.976 11 C -0.160 4.160 12 C -0.100 4.100 13 H 0.081 0.919 14 C -0.147 4.147 15 C -0.041 4.041 16 N -0.316 5.316 17 C 0.362 3.638 18 O -0.448 6.448 19 C -0.096 4.096 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.094 4.094 23 C -0.167 4.167 24 C -0.104 4.104 25 C -0.157 4.157 26 C -0.009 4.009 27 N -0.180 5.180 28 H 0.279 0.721 29 C -0.001 4.001 30 C 0.055 3.945 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.005 0.995 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.167 0.833 42 H 0.153 0.847 43 H 0.166 0.834 44 H 0.175 0.825 45 H 0.166 0.834 46 H 0.073 0.927 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.943 -26.692 -8.439 28.271 hybrid contribution 0.150 2.089 0.450 2.142 sum 4.093 -24.603 -7.989 26.190 Atomic orbital electron populations 1.70037 1.05898 1.25070 1.58294 1.25520 0.96616 1.00563 1.02558 0.85156 0.77551 0.79526 0.77601 1.21089 1.21573 1.20178 1.19291 0.90617 0.83741 1.42836 0.91087 1.45007 1.02674 0.99809 1.86295 1.21805 0.83526 0.95666 0.96640 1.23073 0.97625 0.95178 1.00163 1.20415 0.94525 0.94188 1.00836 0.91884 1.20385 1.00091 0.95631 0.98626 1.21717 0.87588 0.94269 1.00512 1.47052 1.05933 1.12118 1.66498 1.17773 0.82714 0.85884 0.77453 1.90817 1.44309 1.56549 1.53170 1.19618 0.94278 0.91035 1.04694 1.21029 0.97369 0.93132 1.03250 1.18411 0.96718 0.95139 1.04309 1.20681 0.99073 0.91161 0.98460 1.21022 0.97725 0.98579 0.99419 1.21338 0.93431 0.98029 0.97590 1.20441 1.02460 0.90319 1.02520 1.18726 0.93977 0.87318 1.00906 1.42653 1.19282 1.09906 1.46198 0.72109 1.20945 0.99617 0.81193 0.98394 1.20089 0.93503 0.86540 0.94387 0.97780 0.94204 0.90937 0.99499 0.89038 0.91394 0.90510 0.87121 0.87119 0.89545 0.83332 0.84708 0.83398 0.82493 0.83430 0.92694 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.19 10.12 21.65 0.22 -55.97 16 2 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 3 Si 0.97 47.03 29.55 68.60 2.03 49.05 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.24 -13.53 9.77 84.03 0.82 -12.71 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.61 -31.67 3.16 -675.24 -2.13 -33.80 16 10 C 0.15 7.16 5.91 86.88 0.51 7.67 16 11 C -0.12 -4.10 6.24 32.00 0.20 -3.90 16 12 C -0.08 -2.53 2.63 -11.99 -0.03 -2.56 16 13 H 0.06 1.99 8.10 -2.39 -0.02 1.97 16 14 C -0.11 -2.27 5.55 28.50 0.16 -2.11 16 15 C 0.08 1.69 5.08 85.84 0.44 2.12 16 16 N -0.59 -18.33 3.03 -841.94 -2.55 -20.88 16 17 C 0.57 19.27 7.58 86.56 0.66 19.92 16 18 O -0.57 -24.19 16.23 -4.17 -0.07 -24.25 16 19 C 0.01 0.34 6.24 39.91 0.25 0.59 16 20 C -0.12 -3.09 10.64 22.55 0.24 -2.85 16 21 C -0.14 -3.04 6.16 -21.36 -0.13 -3.17 16 22 C -0.08 -1.24 10.06 22.30 0.22 -1.02 16 23 C -0.15 -1.79 9.97 22.02 0.22 -1.57 16 24 C -0.08 -0.89 10.01 22.31 0.22 -0.67 16 25 C -0.14 -1.75 10.08 22.37 0.23 -1.53 16 26 C 0.10 1.87 7.25 39.13 0.28 2.15 16 27 N -0.57 -10.78 4.75 -177.18 -0.84 -11.62 16 28 H 0.43 5.87 6.26 -92.71 -0.58 5.29 16 29 C 0.12 4.99 5.47 86.12 0.47 5.46 16 30 C 0.16 6.82 3.28 43.59 0.14 6.96 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.07 3.99 5.91 -2.39 -0.01 3.98 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 38 H 0.11 1.64 7.65 -2.39 -0.02 1.62 16 39 H 0.11 1.81 4.12 -2.39 -0.01 1.80 16 40 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 41 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.05 2.39 8.07 -2.39 -0.02 2.37 16 47 H 0.06 2.58 6.81 -2.39 -0.02 2.56 16 Total: -1.00 -75.95 367.71 2.44 -73.51 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.42 Total: 14.12 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.37 Total: 9.83 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -5.30 Total: -122.27 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.25 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -75.95 2.44 -73.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042346403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.746 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds