Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46994 * 299.99511 * 3 2 1 6 6 H 1.48495 * 109.47477 * 59.99544 * 3 2 1 7 7 C 1.38815 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99471 * 164.51737 * 7 2 1 9 9 N 1.36925 * 120.00064 * 344.51820 * 7 2 1 10 10 C 1.47009 * 121.37707 * 335.96919 * 9 7 2 11 11 C 1.50327 * 109.16554 * 222.97002 * 10 9 7 12 12 C 1.29451 * 123.65425 * 349.02041 * 11 10 9 13 13 C 1.50694 * 117.69384 * 180.86095 * 12 11 10 14 14 C 1.52991 * 109.47250 * 95.00286 * 13 12 11 15 15 N 1.46503 * 109.47350 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00273 * 180.02562 * 15 14 13 17 17 O 1.21642 * 120.00274 * 359.97438 * 16 15 14 18 18 C 1.47064 * 119.99833 * 179.97438 * 16 15 14 19 19 C 1.35871 * 125.42752 * 180.02562 * 18 16 15 20 20 C 1.41583 * 107.72357 * 179.97438 * 19 18 16 21 21 C 1.40104 * 133.37399 * 179.97438 * 20 19 18 22 22 C 1.36442 * 119.82781 * 180.02562 * 21 20 19 23 23 C 1.38943 * 120.61775 * 359.96461 * 22 21 20 24 24 C 1.37667 * 120.64588 * 0.04713 * 23 22 21 25 25 C 1.39224 * 119.81444 * 359.97008 * 24 23 22 26 26 N 1.37482 * 133.18839 * 179.97438 * 25 24 23 27 27 H 0.97005 * 125.60108 * 0.02562 * 26 25 24 28 28 C 1.49968 * 124.60656 * 1.13852 * 12 11 10 29 29 C 1.47345 * 121.37581 * 155.99150 * 9 7 2 30 30 H 0.97002 * 119.99947 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.52061 * 103.06509 * 10 9 7 32 32 H 1.08994 * 109.52035 * 342.87559 * 10 9 7 33 33 H 1.08003 * 118.17086 * 169.00228 * 11 10 9 34 34 H 1.08999 * 109.47410 * 334.99481 * 13 12 11 35 35 H 1.09007 * 109.46906 * 215.00397 * 13 12 11 36 36 H 1.08995 * 109.47713 * 59.99780 * 14 13 12 37 37 H 1.09003 * 109.47407 * 299.99424 * 14 13 12 38 38 H 0.97008 * 119.99811 * 359.97438 * 15 14 13 39 39 H 1.08000 * 126.13909 * 359.94208 * 19 18 16 40 40 H 1.08002 * 120.08622 * 0.05721 * 21 20 19 41 41 H 1.08006 * 119.69238 * 180.02562 * 22 21 20 42 42 H 1.07993 * 119.67649 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.09306 * 180.24917 * 24 23 22 44 44 H 1.09008 * 109.31319 * 101.01212 * 28 12 11 45 45 H 1.09003 * 109.31370 * 220.43053 * 28 12 11 46 46 H 1.08996 * 109.77656 * 237.78814 * 29 9 7 47 47 H 1.09003 * 109.77642 * 358.59847 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2192 -0.2491 9 7 1.3629 -2.3663 0.3176 10 6 0.1444 -2.3650 1.1401 11 6 0.2247 -3.4821 2.1428 12 6 1.1203 -4.4161 2.1062 13 6 1.0638 -5.4827 3.1692 14 6 0.2871 -6.6898 2.6396 15 7 0.2316 -7.7265 3.6732 16 6 -0.4064 -8.8883 3.4289 17 8 -0.9365 -9.0760 2.3502 18 6 -0.4615 -9.9292 4.4663 19 6 -1.0718 -11.1365 4.3390 20 6 -0.8960 -11.8387 5.5558 21 6 -1.2976 -13.1042 6.0031 22 6 -0.9699 -13.5145 7.2624 23 6 -0.2396 -12.6886 8.1081 24 6 0.1663 -11.4407 7.6919 25 6 -0.1561 -10.9993 6.4115 26 7 0.0993 -9.8357 5.7253 27 1 0.5925 -9.0742 6.0687 28 6 2.2138 -4.5079 1.0839 29 6 1.8590 -3.6722 -0.1511 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7265 -2.5110 0.5011 32 1 0.0586 -1.4122 1.6624 33 1 -0.5055 -3.5067 2.9383 34 1 0.5636 -5.0882 4.0536 35 1 2.0767 -5.7888 3.4310 36 1 0.7873 -7.0843 1.7553 37 1 -0.7258 -6.3838 2.3779 38 1 0.6547 -7.5771 4.5333 39 1 -1.5971 -11.4958 3.4665 40 1 -1.8646 -13.7536 5.3525 41 1 -1.2802 -14.4907 7.6048 42 1 0.0118 -13.0289 9.1017 43 1 0.7370 -10.8078 8.3552 44 1 3.1442 -4.1406 1.5172 45 1 2.3437 -5.5488 0.7876 46 1 1.0846 -4.1744 -0.7310 47 1 2.7476 -3.5300 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161834755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = 56.384552 kcal Electronic energy + Delta-G solvation = -27323.235724 eV Core-core repulsion = 23471.912970 eV Total energy + Delta-G solvation = -3851.322754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.94442 -39.66480 -37.95329 -37.13073 -35.59541 -33.67235 -32.55233 -31.49973 -30.20313 -29.77815 -29.42736 -28.55001 -25.67140 -24.19552 -22.95856 -22.57342 -22.43884 -21.51761 -21.01932 -20.34062 -18.78769 -17.65922 -17.48790 -16.49169 -16.11407 -15.90864 -15.57368 -15.13950 -15.01213 -14.79582 -14.44825 -14.19236 -14.12282 -13.93580 -13.71889 -13.59574 -13.34254 -13.23965 -12.68092 -12.28559 -12.13095 -12.06639 -12.01140 -11.62523 -11.45682 -11.33093 -11.07498 -10.93747 -10.75758 -10.50450 -10.29951 -10.29212 -10.21348 -9.82555 -9.57445 -9.36202 -8.67334 -8.65042 -8.18141 -7.96021 -6.73699 -5.79698 -3.18427 0.39035 1.21726 1.76749 2.47337 2.69264 3.01159 3.05504 3.36588 3.44181 3.46317 3.51256 4.26130 4.36844 4.48805 4.61204 4.71190 4.89647 5.00408 5.02554 5.04285 5.13818 5.20309 5.33689 5.38607 5.51538 5.57117 5.59213 5.63547 5.73108 5.93407 5.95237 6.01710 6.06766 6.10768 6.16591 6.20068 6.23835 6.28724 6.36671 6.53223 6.65926 6.76953 6.89202 6.92040 7.16252 7.21272 7.30722 7.38355 7.74325 7.83838 7.85912 8.38193 9.19766 9.82609 10.41221 11.30719 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.001629 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.378114 B =17183.883691 C =17467.585530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.092 4.092 14 C 0.124 3.876 15 N -0.726 5.726 16 C 0.580 3.420 17 O -0.518 6.518 18 C 0.018 3.982 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.060 4.060 22 C -0.150 4.150 23 C -0.088 4.088 24 C -0.133 4.133 25 C 0.112 3.888 26 N -0.579 5.579 27 H 0.417 0.583 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.394 0.606 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.025 0.975 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -24.917 17.135 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.164 4.164 12 C -0.145 4.145 13 C -0.129 4.129 14 C 0.001 3.999 15 N -0.377 5.377 16 C 0.365 3.635 17 O -0.393 6.393 18 C -0.091 4.091 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.078 4.078 22 C -0.170 4.170 23 C -0.108 4.108 24 C -0.154 4.154 25 C 0.002 3.998 26 N -0.184 5.184 27 H 0.255 0.745 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.175 0.825 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.567 -24.698 16.280 29.586 hybrid contribution 0.840 1.394 0.791 1.810 sum 0.273 -23.304 17.071 28.889 Atomic orbital electron populations 1.70027 1.05173 1.25353 1.54902 1.24994 0.95389 0.98280 1.01329 0.86187 0.79229 0.83921 0.77250 1.20329 1.21739 1.21636 1.19229 0.92234 0.84388 1.41586 0.91345 1.44138 1.29251 1.01161 1.57320 1.19714 0.88697 0.94742 0.89770 1.23138 0.96555 0.97328 0.99341 1.20204 0.99469 0.96575 0.98255 1.20912 0.99910 0.94122 0.97990 1.21538 1.01679 0.86422 0.90235 1.46019 1.56548 1.16665 1.18498 1.17201 0.79065 0.80990 0.86211 1.90881 1.45558 1.79120 1.23719 1.20223 1.04871 0.97957 0.86031 1.20948 1.02039 0.92228 0.98133 1.18229 1.03788 0.95820 0.94605 1.20443 0.97902 0.93659 0.95840 1.20660 1.01510 1.00455 0.94335 1.20895 0.97300 0.93016 0.99584 1.20084 1.04569 0.97654 0.93083 1.18347 1.00252 0.86867 0.94307 1.41937 1.48716 1.15817 1.11914 0.74469 1.20794 0.96503 0.99028 0.96676 1.20995 0.97366 0.87224 0.92815 0.93676 0.94337 0.89121 0.89081 0.91541 0.91461 0.90772 0.90794 0.77287 0.82543 0.85637 0.85816 0.85527 0.85956 0.91924 0.92909 0.95740 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.32 11.08 55.49 0.61 -25.71 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 3 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.73 9.71 -15.06 -0.15 -6.88 16 8 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 9 N -0.60 -14.99 3.01 -173.56 -0.52 -15.52 16 10 C 0.20 4.68 5.23 -5.10 -0.03 4.66 16 11 C -0.14 -2.73 9.47 -35.78 -0.34 -3.07 16 12 C -0.14 -2.41 5.11 -100.99 -0.52 -2.93 16 13 C -0.09 -1.12 5.32 -27.89 -0.15 -1.27 16 14 C 0.12 1.52 5.66 -4.04 -0.02 1.49 16 15 N -0.73 -7.30 5.55 -61.50 -0.34 -7.64 16 16 C 0.58 7.07 7.80 -12.68 -0.10 6.97 16 17 O -0.52 -8.32 16.84 5.24 0.09 -8.23 16 18 C 0.02 0.19 6.97 -82.29 -0.57 -0.38 16 19 C -0.11 -1.12 10.53 -39.16 -0.41 -1.53 16 20 C -0.12 -1.15 6.16 -106.93 -0.66 -1.81 16 21 C -0.06 -0.47 10.06 -39.53 -0.40 -0.86 16 22 C -0.15 -0.98 9.97 -39.97 -0.40 -1.38 16 23 C -0.09 -0.55 10.01 -39.53 -0.40 -0.95 16 24 C -0.13 -0.93 10.08 -39.42 -0.40 -1.32 16 25 C 0.11 0.98 7.25 -83.97 -0.61 0.37 16 26 N -0.58 -4.53 6.07 -7.35 -0.04 -4.57 16 27 H 0.42 2.01 8.12 -40.82 -0.33 1.68 16 28 C -0.09 -1.57 5.95 -28.09 -0.17 -1.74 16 29 C 0.14 2.99 6.59 -3.43 -0.02 2.97 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 2.40 6.41 -51.93 -0.33 2.07 16 33 H 0.09 1.52 7.73 -52.48 -0.41 1.12 16 34 H 0.07 0.75 7.78 -51.93 -0.40 0.34 16 35 H 0.07 0.73 8.11 -51.92 -0.42 0.31 16 36 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.39 2.70 7.53 -40.82 -0.31 2.39 16 39 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.54 8.06 -52.48 -0.42 0.11 16 42 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 43 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 45 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -33.19 389.21 -11.60 -44.78 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.81 Total: 2.17 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -5.42 Total: -7.82 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.29 Total: -53.44 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.19 -11.60 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161834755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.168 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds