Wall clock time and date at job start Sat Apr 11 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46994 * 299.99511 * 3 2 1 6 6 H 1.48495 * 109.47477 * 59.99544 * 3 2 1 7 7 C 1.38815 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99471 * 164.51737 * 7 2 1 9 9 N 1.36925 * 120.00064 * 344.51820 * 7 2 1 10 10 C 1.47009 * 121.37707 * 335.96919 * 9 7 2 11 11 C 1.50327 * 109.16554 * 222.97002 * 10 9 7 12 12 C 1.29451 * 123.65425 * 349.02041 * 11 10 9 13 13 C 1.50694 * 117.69384 * 180.86095 * 12 11 10 14 14 C 1.52991 * 109.47250 * 95.00286 * 13 12 11 15 15 N 1.46503 * 109.47350 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00273 * 180.02562 * 15 14 13 17 17 O 1.21642 * 120.00274 * 359.97438 * 16 15 14 18 18 C 1.47064 * 119.99833 * 179.97438 * 16 15 14 19 19 C 1.35871 * 125.42752 * 180.02562 * 18 16 15 20 20 C 1.41583 * 107.72357 * 179.97438 * 19 18 16 21 21 C 1.40104 * 133.37399 * 179.97438 * 20 19 18 22 22 C 1.36442 * 119.82781 * 180.02562 * 21 20 19 23 23 C 1.38943 * 120.61775 * 359.96461 * 22 21 20 24 24 C 1.37667 * 120.64588 * 0.04713 * 23 22 21 25 25 C 1.39224 * 119.81444 * 359.97008 * 24 23 22 26 26 N 1.37482 * 133.18839 * 179.97438 * 25 24 23 27 27 H 0.97005 * 125.60108 * 0.02562 * 26 25 24 28 28 C 1.49968 * 124.60656 * 1.13852 * 12 11 10 29 29 C 1.47345 * 121.37581 * 155.99150 * 9 7 2 30 30 H 0.97002 * 119.99947 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.52061 * 103.06509 * 10 9 7 32 32 H 1.08994 * 109.52035 * 342.87559 * 10 9 7 33 33 H 1.08003 * 118.17086 * 169.00228 * 11 10 9 34 34 H 1.08999 * 109.47410 * 334.99481 * 13 12 11 35 35 H 1.09007 * 109.46906 * 215.00397 * 13 12 11 36 36 H 1.08995 * 109.47713 * 59.99780 * 14 13 12 37 37 H 1.09003 * 109.47407 * 299.99424 * 14 13 12 38 38 H 0.97008 * 119.99811 * 359.97438 * 15 14 13 39 39 H 1.08000 * 126.13909 * 359.94208 * 19 18 16 40 40 H 1.08002 * 120.08622 * 0.05721 * 21 20 19 41 41 H 1.08006 * 119.69238 * 180.02562 * 22 21 20 42 42 H 1.07993 * 119.67649 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.09306 * 180.24917 * 24 23 22 44 44 H 1.09008 * 109.31319 * 101.01212 * 28 12 11 45 45 H 1.09003 * 109.31370 * 220.43053 * 28 12 11 46 46 H 1.08996 * 109.77656 * 237.78814 * 29 9 7 47 47 H 1.09003 * 109.77642 * 358.59847 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2192 -0.2491 9 7 1.3629 -2.3663 0.3176 10 6 0.1444 -2.3650 1.1401 11 6 0.2247 -3.4821 2.1428 12 6 1.1203 -4.4161 2.1062 13 6 1.0638 -5.4827 3.1692 14 6 0.2871 -6.6898 2.6396 15 7 0.2316 -7.7265 3.6732 16 6 -0.4064 -8.8883 3.4289 17 8 -0.9365 -9.0760 2.3502 18 6 -0.4615 -9.9292 4.4663 19 6 -1.0718 -11.1365 4.3390 20 6 -0.8960 -11.8387 5.5558 21 6 -1.2976 -13.1042 6.0031 22 6 -0.9699 -13.5145 7.2624 23 6 -0.2396 -12.6886 8.1081 24 6 0.1663 -11.4407 7.6919 25 6 -0.1561 -10.9993 6.4115 26 7 0.0993 -9.8357 5.7253 27 1 0.5925 -9.0742 6.0687 28 6 2.2138 -4.5079 1.0839 29 6 1.8590 -3.6722 -0.1511 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7265 -2.5110 0.5011 32 1 0.0586 -1.4122 1.6624 33 1 -0.5055 -3.5067 2.9383 34 1 0.5636 -5.0882 4.0536 35 1 2.0767 -5.7888 3.4310 36 1 0.7873 -7.0843 1.7553 37 1 -0.7258 -6.3838 2.3779 38 1 0.6547 -7.5771 4.5333 39 1 -1.5971 -11.4958 3.4665 40 1 -1.8646 -13.7536 5.3525 41 1 -1.2802 -14.4907 7.6048 42 1 0.0118 -13.0289 9.1017 43 1 0.7370 -10.8078 8.3552 44 1 3.1442 -4.1406 1.5172 45 1 2.3437 -5.5488 0.7876 46 1 1.0846 -4.1744 -0.7310 47 1 2.7476 -3.5300 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161834755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:49 Heat of formation + Delta-G solvation = 36.400796 kcal Electronic energy + Delta-G solvation = -27324.102285 eV Core-core repulsion = 23471.912970 eV Total energy + Delta-G solvation = -3852.189314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.59917 -40.59924 -39.46690 -37.71583 -36.85568 -35.21039 -33.26835 -33.10840 -31.54896 -30.95368 -30.15645 -29.67793 -27.25451 -25.33630 -24.46364 -23.72960 -23.15307 -22.52191 -22.19295 -21.20999 -19.56143 -19.41734 -18.19239 -17.62630 -17.14958 -17.00985 -16.75144 -16.61425 -15.86108 -15.74181 -15.66089 -15.33708 -15.19214 -15.05178 -14.80940 -14.75206 -14.49594 -14.29922 -13.89470 -13.85319 -13.41655 -13.22811 -12.88318 -12.82124 -12.62705 -12.60312 -12.57032 -12.39388 -12.14188 -11.93489 -11.82800 -11.68986 -11.49596 -11.16520 -10.91771 -10.70442 -10.32296 -9.50951 -9.24666 -8.78438 -8.76237 -7.89217 -5.31345 -0.26896 0.66981 1.05373 1.37761 1.45552 1.46500 1.57549 1.81678 2.04326 2.20693 2.50010 2.95983 3.27641 3.58527 3.66902 3.75178 3.93877 4.04473 4.07103 4.10366 4.21146 4.26878 4.36503 4.47808 4.54375 4.55675 4.57814 4.66136 4.79528 4.85070 4.88818 4.93475 4.95153 5.01414 5.14675 5.15928 5.22054 5.22894 5.40604 5.46402 5.49649 5.54082 5.60149 5.65427 5.70483 5.85933 6.11690 6.26108 6.31151 6.32610 6.48672 6.96224 7.12176 7.82258 8.37067 9.19525 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.001629 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.378114 B =17183.883691 C =17467.585530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.173 4.173 12 C -0.121 4.121 13 C -0.078 4.078 14 C 0.131 3.869 15 N -0.709 5.709 16 C 0.581 3.419 17 O -0.565 6.565 18 C 0.007 3.993 19 C -0.121 4.121 20 C -0.145 4.145 21 C -0.076 4.076 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.140 4.140 25 C 0.103 3.897 26 N -0.565 5.565 27 H 0.431 0.569 28 C -0.087 4.087 29 C 0.134 3.866 30 H 0.249 0.751 31 H 0.002 0.998 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.413 0.587 39 H 0.150 0.850 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.018 0.982 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -26.807 20.185 33.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.192 4.192 12 C -0.122 4.122 13 C -0.116 4.116 14 C 0.008 3.992 15 N -0.360 5.360 16 C 0.369 3.631 17 O -0.444 6.444 18 C -0.103 4.103 19 C -0.148 4.148 20 C -0.150 4.150 21 C -0.094 4.094 22 C -0.169 4.169 23 C -0.106 4.106 24 C -0.160 4.160 25 C -0.007 4.007 26 N -0.172 5.172 27 H 0.272 0.728 28 C -0.126 4.126 29 C 0.009 3.991 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.250 0.750 39 H 0.168 0.832 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.173 0.827 43 H 0.164 0.836 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.473 -26.595 19.379 32.939 hybrid contribution 0.243 1.820 -0.144 1.841 sum 1.716 -24.775 19.234 31.412 Atomic orbital electron populations 1.70204 1.06672 1.25714 1.56290 1.25797 0.96173 1.01511 1.01661 0.85146 0.78568 0.79655 0.76732 1.18937 1.22012 1.21675 1.19583 0.92587 0.85605 1.40924 0.91068 1.44427 1.29418 1.02078 1.57964 1.19361 0.87292 0.95300 0.90014 1.22829 0.99387 0.97117 0.99845 1.20555 0.97207 0.96253 0.98177 1.20805 1.01798 0.92245 0.96736 1.21288 1.00540 0.86820 0.90565 1.45754 1.55904 1.15480 1.18894 1.17406 0.78341 0.81501 0.85887 1.90855 1.47686 1.80101 1.25721 1.19873 1.06211 0.97450 0.86745 1.21081 1.02279 0.92843 0.98646 1.18452 1.05002 0.96967 0.94548 1.20699 0.98447 0.93408 0.96866 1.21024 1.00718 1.01484 0.93724 1.21332 0.96036 0.92520 1.00666 1.20431 1.04653 0.98345 0.92575 1.18639 1.00256 0.86856 0.94971 1.41791 1.48321 1.16224 1.10827 0.72795 1.20750 0.96783 1.00055 0.94969 1.21201 0.97061 0.86065 0.94794 0.94160 0.98018 0.92675 0.86851 0.89654 0.88678 0.91648 0.92674 0.75046 0.83188 0.84665 0.83514 0.82694 0.83613 0.91223 0.89572 0.96398 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.83 11.08 21.65 0.24 -56.59 16 2 C -0.06 -3.23 5.01 84.86 0.43 -2.80 16 3 Si 0.97 45.39 29.58 68.60 2.03 47.42 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.26 -14.39 9.71 84.04 0.82 -13.57 16 8 H 0.07 3.85 7.88 -2.91 -0.02 3.82 16 9 N -0.61 -31.70 3.01 -703.02 -2.11 -33.82 16 10 C 0.21 10.29 5.23 85.42 0.45 10.74 16 11 C -0.17 -6.52 9.47 27.11 0.26 -6.26 16 12 C -0.12 -3.80 5.11 -15.14 -0.08 -3.88 16 13 C -0.08 -1.62 5.32 29.84 0.16 -1.47 16 14 C 0.13 2.94 5.66 86.38 0.49 3.43 16 15 N -0.71 -12.71 5.55 -466.73 -2.59 -15.30 16 16 C 0.58 13.85 7.80 86.56 0.68 14.52 16 17 O -0.56 -18.53 16.84 -4.16 -0.07 -18.60 16 18 C 0.01 0.14 6.97 39.92 0.28 0.42 16 19 C -0.12 -2.58 10.53 22.55 0.24 -2.34 16 20 C -0.15 -2.69 6.16 -21.36 -0.13 -2.82 16 21 C -0.08 -1.09 10.06 22.30 0.22 -0.87 16 22 C -0.15 -1.58 9.97 22.02 0.22 -1.37 16 23 C -0.09 -0.79 10.01 22.30 0.22 -0.56 16 24 C -0.14 -1.52 10.08 22.37 0.23 -1.30 16 25 C 0.10 1.61 7.25 39.14 0.28 1.90 16 26 N -0.57 -7.80 6.07 -177.18 -1.08 -8.88 16 27 H 0.43 2.96 8.12 -92.70 -0.75 2.21 16 28 C -0.09 -2.81 5.95 29.72 0.18 -2.64 16 29 C 0.13 5.61 6.59 86.31 0.57 6.18 16 30 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 31 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.06 3.09 6.41 -2.39 -0.02 3.08 16 33 H 0.11 3.71 7.73 -2.91 -0.02 3.69 16 34 H 0.08 1.55 7.78 -2.39 -0.02 1.53 16 35 H 0.09 1.56 8.11 -2.38 -0.02 1.54 16 36 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.41 4.26 7.53 -92.70 -0.70 3.56 16 39 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 43 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 Total: -1.00 -76.03 389.21 1.46 -74.57 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.45 Total: 13.88 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 5.50 Total: -2.69 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -5.54 Total: -114.59 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.07 Total: -18.60 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.03 1.46 -74.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161834755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.973 kcal (2) G-P(sol) polarization free energy of solvation -76.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds