Wall clock time and date at job start Sat Apr 11 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86792 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47446 * 265.53194 * 3 2 1 5 5 H 1.48501 * 109.47402 * 25.53764 * 3 2 1 6 6 H 1.48497 * 109.47023 * 145.53626 * 3 2 1 7 7 C 1.40072 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00022 * 342.76078 * 7 2 1 9 9 C 1.40901 * 119.99554 * 162.75928 * 7 2 1 10 10 C 1.40267 * 120.70254 * 329.91985 * 9 7 2 11 11 C 1.40227 * 118.13881 * 179.97438 * 10 9 7 12 12 C 1.40847 * 120.56767 * 179.97438 * 11 10 9 13 13 C 1.36132 * 119.70888 * 180.02562 * 12 11 10 14 14 C 1.39298 * 120.76874 * 0.02562 * 13 12 11 15 15 C 1.36285 * 121.07317 * 359.96244 * 14 13 12 16 16 C 1.40433 * 119.96299 * 0.03843 * 15 14 13 17 17 N 1.34041 * 120.12436 * 179.70873 * 16 15 14 18 18 C 1.31366 * 121.96720 * 179.75616 * 17 16 15 19 19 N 1.38086 * 119.76408 * 180.26889 * 18 17 16 20 20 C 1.46503 * 120.00037 * 0.25334 * 19 18 17 21 21 C 1.52997 * 109.47155 * 180.02562 * 20 19 18 22 22 H 1.08996 * 110.68525 * 57.30839 * 21 20 19 23 23 C 1.54277 * 110.77313 * 294.02707 * 21 20 19 24 24 O 1.43142 * 107.50816 * 219.39087 * 23 21 20 25 25 C 1.43437 * 110.59892 * 0.61235 * 24 23 21 26 26 H 1.08998 * 113.17413 * 256.97113 * 25 24 23 27 27 C 1.54751 * 108.41890 * 130.38534 * 25 24 23 28 28 N 1.47706 * 105.23139 * 285.34625 * 27 25 24 29 29 C 1.47354 * 108.59922 * 335.90942 * 28 27 25 30 30 C 1.54855 * 110.77017 * 180.79217 * 21 20 19 31 31 H 1.09007 * 113.66266 * 274.16535 * 30 21 20 32 32 H 0.97000 * 119.99377 * 0.02562 * 1 2 3 33 33 H 1.07997 * 120.92774 * 359.95493 * 10 9 7 34 34 H 1.07997 * 120.14439 * 0.03742 * 12 11 10 35 35 H 1.07995 * 119.61403 * 179.97438 * 13 12 11 36 36 H 1.08006 * 119.46292 * 179.97438 * 14 13 12 37 37 H 1.07996 * 120.01553 * 180.02562 * 15 14 13 38 38 H 0.96998 * 120.00079 * 180.25633 * 19 18 17 39 39 H 1.09004 * 109.47186 * 300.00039 * 20 19 18 40 40 H 1.08995 * 109.47167 * 59.99788 * 20 19 18 41 41 H 1.09001 * 109.84250 * 338.87787 * 23 21 20 42 42 H 1.08999 * 109.84337 * 99.89543 * 23 21 20 43 43 H 1.09002 * 110.29154 * 44.28390 * 27 25 24 44 44 H 1.08999 * 110.29041 * 166.40210 * 27 25 24 45 45 H 1.00896 * 111.00222 * 98.19984 * 28 27 25 46 46 H 1.09000 * 109.83220 * 121.32393 * 29 28 27 47 47 H 1.08998 * 109.83631 * 242.20660 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.5839 1.9919 -1.3958 5 1 1.3955 2.6781 0.6036 6 1 3.4891 1.4691 0.7923 7 6 2.0082 -1.2131 0.0005 8 1 1.5045 -2.1272 0.2781 9 6 3.3697 -1.2407 -0.3611 10 6 3.8863 -0.3127 -1.2773 11 6 5.2492 -0.3887 -1.5984 12 6 5.8214 0.5171 -2.5126 13 6 7.1463 0.4271 -2.8121 14 6 7.9446 -0.5519 -2.2250 15 6 7.4240 -1.4443 -1.3362 16 6 6.0618 -1.3859 -1.0000 17 7 5.5451 -2.2657 -0.1306 18 6 4.2775 -2.2412 0.2131 19 7 3.7944 -3.1663 1.1174 20 6 4.6960 -4.1668 1.6940 21 6 3.9145 -5.0626 2.6572 22 1 3.0773 -5.5386 2.1468 23 6 3.4245 -4.2568 3.8781 24 8 3.5724 -5.0907 5.0321 25 6 4.1289 -6.3617 4.6682 26 1 3.3882 -7.1607 4.6353 27 6 5.3149 -6.6653 5.6147 28 7 6.4116 -5.7884 5.1562 29 6 6.1840 -5.4530 3.7395 30 6 4.8447 -6.1206 3.3001 31 1 4.9644 -7.0215 2.6981 32 1 -0.4849 0.8401 -0.0004 33 1 3.2520 0.4391 -1.7232 34 1 5.2117 1.2799 -2.9739 35 1 7.5833 1.1222 -3.5136 36 1 8.9933 -0.6044 -2.4781 37 1 8.0587 -2.1961 -0.8909 38 1 2.8582 -3.1537 1.3708 39 1 5.1210 -4.7757 0.8960 40 1 5.4983 -3.6645 2.2343 41 1 4.0272 -3.3559 3.9930 42 1 2.3762 -3.9882 3.7476 43 1 5.0470 -6.4285 6.6444 44 1 5.6074 -7.7119 5.5305 45 1 6.4676 -4.9541 5.7208 46 1 6.1100 -4.3718 3.6227 47 1 7.0049 -5.8349 3.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163102615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:05 Heat of formation + Delta-G solvation = 11.314326 kcal Electronic energy + Delta-G solvation = -29360.966101 eV Core-core repulsion = 25507.688956 eV Total energy + Delta-G solvation = -3853.277145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.83410 -39.37327 -37.01099 -35.76827 -35.00966 -34.01714 -32.24281 -32.04991 -29.84481 -29.25551 -28.52894 -27.30900 -25.55949 -25.35096 -22.71365 -22.01303 -21.82252 -21.01949 -20.80579 -19.70694 -18.44521 -17.43329 -16.96590 -16.63485 -16.22312 -15.83452 -15.54558 -15.14285 -14.78969 -14.66616 -14.35331 -13.81243 -13.79615 -13.45994 -13.31815 -13.16469 -12.82824 -12.73273 -12.56766 -12.48424 -12.25243 -12.10682 -12.04876 -11.43758 -11.37762 -11.25315 -11.11624 -11.00062 -10.86055 -10.60839 -10.53975 -10.27867 -10.02923 -9.77601 -9.65390 -9.05706 -8.91675 -8.60928 -8.29623 -7.46348 -7.24435 -6.81103 -4.65293 1.58353 2.02731 2.94703 3.03196 3.08874 3.27247 3.49564 3.70217 3.81380 3.83013 4.06899 4.14096 4.57920 4.59138 4.60646 4.78247 4.87177 5.01869 5.14293 5.23288 5.31502 5.36225 5.47413 5.49422 5.61186 5.63567 5.66599 5.69972 5.74234 5.82732 5.84034 5.90165 6.03362 6.08978 6.18567 6.23284 6.32088 6.60731 6.62727 6.78390 6.86277 6.87319 7.04095 7.13291 7.15382 7.30429 7.47532 7.56336 7.69324 7.77910 8.01877 8.08511 8.37269 8.46173 9.25909 9.74846 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003778 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.016492 B = 7410.331075 C = 9516.243166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.085 3.915 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.422 4.422 8 H 0.094 0.906 9 C 0.035 3.965 10 C -0.273 4.273 11 C -0.048 4.048 12 C -0.131 4.131 13 C -0.132 4.132 14 C -0.163 4.163 15 C -0.086 4.086 16 C 0.087 3.913 17 N -0.554 5.554 18 C 0.399 3.601 19 N -0.717 5.717 20 C 0.147 3.853 21 C -0.129 4.129 22 H 0.092 0.908 23 C 0.056 3.944 24 O -0.379 6.379 25 C 0.047 3.953 26 H 0.093 0.907 27 C 0.046 3.954 28 N -0.679 5.679 29 C 0.048 3.952 30 C -0.127 4.127 31 H 0.109 0.891 32 H 0.291 0.709 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.409 0.591 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.342 0.658 46 H 0.067 0.933 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 -8.177 6.322 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.137 4.137 3 Si 0.747 3.253 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.173 1.173 7 C -0.450 4.450 8 H 0.112 0.888 9 C 0.028 3.972 10 C -0.298 4.298 11 C -0.052 4.052 12 C -0.151 4.151 13 C -0.150 4.150 14 C -0.183 4.183 15 C -0.106 4.106 16 C -0.029 4.029 17 N -0.275 5.275 18 C 0.143 3.857 19 N -0.355 5.355 20 C 0.023 3.977 21 C -0.148 4.148 22 H 0.111 0.889 23 C -0.021 4.021 24 O -0.299 6.299 25 C -0.012 4.012 26 H 0.111 0.889 27 C -0.083 4.083 28 N -0.307 5.307 29 C -0.081 4.081 30 C -0.147 4.147 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.158 0.842 46 H 0.086 0.914 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.949 -9.203 6.756 13.365 hybrid contribution -1.549 1.975 -0.604 2.582 sum 5.400 -7.228 6.152 10.920 Atomic orbital electron populations 1.69638 1.08136 1.31046 1.32467 1.26198 0.94806 1.01982 0.90685 0.86178 0.80035 0.79006 0.80056 1.18848 1.21895 1.17289 1.19269 0.92222 0.96032 1.37480 0.88791 1.19089 0.93203 0.92143 0.92765 1.21022 0.94298 1.07819 1.06664 1.18433 0.94233 0.95574 0.96916 1.20832 0.95020 0.99406 0.99807 1.20476 0.94183 0.99263 1.01125 1.20358 0.98839 0.98152 1.00955 1.20430 0.93210 0.98867 0.98045 1.18043 0.93423 0.93948 0.97496 1.67048 1.12486 1.27816 1.20139 1.19979 0.88745 0.88758 0.88218 1.44062 1.11789 1.32804 1.46827 1.21136 0.92162 0.89411 0.95019 1.22894 0.98930 0.96281 0.96737 0.88934 1.23249 1.01565 0.93631 0.83630 1.88293 1.84605 1.25286 1.31677 1.24521 0.94980 0.87457 0.94252 0.88900 1.23023 0.88056 0.98607 0.98650 1.61728 1.44420 1.21197 1.03343 1.23063 0.95563 1.00038 0.89400 1.24163 0.95628 0.98795 0.96155 0.87292 0.89820 0.86435 0.87490 0.87788 0.87623 0.87060 0.75330 0.91829 0.91594 0.90849 0.90718 0.90615 0.89582 0.84222 0.91421 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.10 13.93 55.55 0.77 -18.33 16 2 C 0.09 2.03 5.43 -17.31 -0.09 1.94 16 3 Si 0.92 20.05 24.72 -169.99 -4.20 15.85 16 4 H -0.26 -5.65 6.22 56.52 0.35 -5.30 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.25 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.42 -10.08 9.00 -37.89 -0.34 -10.42 16 8 H 0.09 2.23 7.12 -52.49 -0.37 1.86 16 9 C 0.04 0.83 5.26 -104.67 -0.55 0.28 16 10 C -0.27 -6.55 7.16 -38.07 -0.27 -6.82 16 11 C -0.05 -1.11 5.74 -106.77 -0.61 -1.72 16 12 C -0.13 -2.68 9.75 -39.35 -0.38 -3.06 16 13 C -0.13 -2.37 9.96 -39.94 -0.40 -2.77 16 14 C -0.16 -2.89 9.95 -39.89 -0.40 -3.29 16 15 C -0.09 -1.68 9.94 -39.46 -0.39 -2.08 16 16 C 0.09 1.96 6.60 -84.69 -0.56 1.40 16 17 N -0.55 -12.28 9.45 -8.56 -0.08 -12.36 16 18 C 0.40 8.69 7.67 -153.66 -1.18 7.51 16 19 N -0.72 -12.62 5.47 -58.62 -0.32 -12.94 16 20 C 0.15 2.10 4.54 -4.04 -0.02 2.08 16 21 C -0.13 -1.48 2.87 -88.97 -0.26 -1.73 16 22 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 23 C 0.06 0.69 6.49 37.83 0.25 0.93 16 24 O -0.38 -4.76 10.80 -35.23 -0.38 -5.14 16 25 C 0.05 0.47 4.66 -24.05 -0.11 0.36 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 C 0.05 0.43 7.18 -2.46 -0.02 0.41 16 28 N -0.68 -7.04 7.38 -110.07 -0.81 -7.85 16 29 C 0.05 0.52 6.26 -1.99 -0.01 0.51 16 30 C -0.13 -1.27 4.12 -86.30 -0.36 -1.63 16 31 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.29 6.42 8.29 -40.82 -0.34 6.08 16 33 H 0.12 2.81 4.50 -52.49 -0.24 2.57 16 34 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.41 6.94 6.74 -40.82 -0.28 6.66 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.99 5.86 -51.93 -0.30 0.69 16 41 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.34 3.45 8.91 -39.29 -0.35 3.10 16 46 H 0.07 0.80 5.32 -51.93 -0.28 0.52 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -26.99 366.55 -11.68 -38.67 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.47 Total: 14.68 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -5.71 Total: -18.10 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.44 Total: -51.48 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.38 Total: -5.14 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.20 Total: 15.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.99 -11.68 -38.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163102615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.980 kcal (2) G-P(sol) polarization free energy of solvation -26.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds