Wall clock time and date at job start Sat Apr 11 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86792 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47446 * 265.53194 * 3 2 1 5 5 H 1.48501 * 109.47402 * 25.53764 * 3 2 1 6 6 H 1.48497 * 109.47023 * 145.53626 * 3 2 1 7 7 C 1.40072 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00022 * 342.76078 * 7 2 1 9 9 C 1.40901 * 119.99554 * 162.75928 * 7 2 1 10 10 C 1.40267 * 120.70254 * 329.91985 * 9 7 2 11 11 C 1.40227 * 118.13881 * 179.97438 * 10 9 7 12 12 C 1.40847 * 120.56767 * 179.97438 * 11 10 9 13 13 C 1.36132 * 119.70888 * 180.02562 * 12 11 10 14 14 C 1.39298 * 120.76874 * 0.02562 * 13 12 11 15 15 C 1.36285 * 121.07317 * 359.96244 * 14 13 12 16 16 C 1.40433 * 119.96299 * 0.03843 * 15 14 13 17 17 N 1.34041 * 120.12436 * 179.70873 * 16 15 14 18 18 C 1.31366 * 121.96720 * 179.75616 * 17 16 15 19 19 N 1.38086 * 119.76408 * 180.26889 * 18 17 16 20 20 C 1.46503 * 120.00037 * 0.25334 * 19 18 17 21 21 C 1.52997 * 109.47155 * 180.02562 * 20 19 18 22 22 H 1.08996 * 110.68525 * 57.30839 * 21 20 19 23 23 C 1.54277 * 110.77313 * 294.02707 * 21 20 19 24 24 O 1.43142 * 107.50816 * 219.39087 * 23 21 20 25 25 C 1.43437 * 110.59892 * 0.61235 * 24 23 21 26 26 H 1.08998 * 113.17413 * 256.97113 * 25 24 23 27 27 C 1.54751 * 108.41890 * 130.38534 * 25 24 23 28 28 N 1.47706 * 105.23139 * 285.34625 * 27 25 24 29 29 C 1.47354 * 108.59922 * 335.90942 * 28 27 25 30 30 C 1.54855 * 110.77017 * 180.79217 * 21 20 19 31 31 H 1.09007 * 113.66266 * 274.16535 * 30 21 20 32 32 H 0.97000 * 119.99377 * 0.02562 * 1 2 3 33 33 H 1.07997 * 120.92774 * 359.95493 * 10 9 7 34 34 H 1.07997 * 120.14439 * 0.03742 * 12 11 10 35 35 H 1.07995 * 119.61403 * 179.97438 * 13 12 11 36 36 H 1.08006 * 119.46292 * 179.97438 * 14 13 12 37 37 H 1.07996 * 120.01553 * 180.02562 * 15 14 13 38 38 H 0.96998 * 120.00079 * 180.25633 * 19 18 17 39 39 H 1.09004 * 109.47186 * 300.00039 * 20 19 18 40 40 H 1.08995 * 109.47167 * 59.99788 * 20 19 18 41 41 H 1.09001 * 109.84250 * 338.87787 * 23 21 20 42 42 H 1.08999 * 109.84337 * 99.89543 * 23 21 20 43 43 H 1.09002 * 110.29154 * 44.28390 * 27 25 24 44 44 H 1.08999 * 110.29041 * 166.40210 * 27 25 24 45 45 H 1.00896 * 111.00222 * 98.19984 * 28 27 25 46 46 H 1.09000 * 109.83220 * 121.32393 * 29 28 27 47 47 H 1.08998 * 109.83631 * 242.20660 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.5839 1.9919 -1.3958 5 1 1.3955 2.6781 0.6036 6 1 3.4891 1.4691 0.7923 7 6 2.0082 -1.2131 0.0005 8 1 1.5045 -2.1272 0.2781 9 6 3.3697 -1.2407 -0.3611 10 6 3.8863 -0.3127 -1.2773 11 6 5.2492 -0.3887 -1.5984 12 6 5.8214 0.5171 -2.5126 13 6 7.1463 0.4271 -2.8121 14 6 7.9446 -0.5519 -2.2250 15 6 7.4240 -1.4443 -1.3362 16 6 6.0618 -1.3859 -1.0000 17 7 5.5451 -2.2657 -0.1306 18 6 4.2775 -2.2412 0.2131 19 7 3.7944 -3.1663 1.1174 20 6 4.6960 -4.1668 1.6940 21 6 3.9145 -5.0626 2.6572 22 1 3.0773 -5.5386 2.1468 23 6 3.4245 -4.2568 3.8781 24 8 3.5724 -5.0907 5.0321 25 6 4.1289 -6.3617 4.6682 26 1 3.3882 -7.1607 4.6353 27 6 5.3149 -6.6653 5.6147 28 7 6.4116 -5.7884 5.1562 29 6 6.1840 -5.4530 3.7395 30 6 4.8447 -6.1206 3.3001 31 1 4.9644 -7.0215 2.6981 32 1 -0.4849 0.8401 -0.0004 33 1 3.2520 0.4391 -1.7232 34 1 5.2117 1.2799 -2.9739 35 1 7.5833 1.1222 -3.5136 36 1 8.9933 -0.6044 -2.4781 37 1 8.0587 -2.1961 -0.8909 38 1 2.8582 -3.1537 1.3708 39 1 5.1210 -4.7757 0.8960 40 1 5.4983 -3.6645 2.2343 41 1 4.0272 -3.3559 3.9930 42 1 2.3762 -3.9882 3.7476 43 1 5.0470 -6.4285 6.6444 44 1 5.6074 -7.7119 5.5305 45 1 6.4676 -4.9541 5.7208 46 1 6.1100 -4.3718 3.6227 47 1 7.0049 -5.8349 3.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163102615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:04 Heat of formation + Delta-G solvation = -5.817016 kcal Electronic energy + Delta-G solvation = -29361.708972 eV Core-core repulsion = 25507.688956 eV Total energy + Delta-G solvation = -3854.020016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.75771 -40.98157 -38.48658 -36.69240 -36.40653 -35.66375 -33.81035 -33.40704 -31.45198 -30.20862 -29.85086 -28.29491 -27.16132 -26.69928 -23.87266 -23.40404 -23.33138 -22.51593 -21.79324 -20.74828 -20.07311 -18.63064 -18.31672 -17.93203 -17.58592 -17.16935 -16.64735 -16.37579 -16.22297 -15.84936 -15.62530 -15.33290 -15.09195 -14.89683 -14.73636 -14.55728 -14.35052 -13.98743 -13.80786 -13.68871 -13.63354 -13.34340 -13.00158 -12.97761 -12.80985 -12.58039 -12.35756 -12.15101 -11.99116 -11.93136 -11.87005 -11.75834 -11.54122 -11.44147 -10.75975 -10.71538 -10.37619 -10.00191 -9.44019 -9.12860 -9.04591 -8.37651 -6.46652 -0.03874 0.39158 1.19319 1.27954 1.32336 1.52593 2.04761 2.19692 2.34850 2.62025 2.84353 3.16476 3.26996 3.63194 3.66722 3.69344 3.83600 3.96501 3.98054 4.08600 4.10881 4.18681 4.20809 4.35778 4.42479 4.55485 4.57898 4.59422 4.63157 4.68352 4.74407 4.76732 4.80529 4.88078 4.96448 5.00552 5.04847 5.13025 5.17324 5.26455 5.42504 5.47872 5.77411 5.83688 5.84723 5.86886 5.96571 6.06188 6.19108 6.27077 6.33953 6.57393 6.61802 6.76151 7.59370 7.99840 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003778 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.016492 B = 7410.331075 C = 9516.243166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.062 3.938 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.442 4.442 8 H 0.084 0.916 9 C 0.017 3.983 10 C -0.283 4.283 11 C -0.084 4.084 12 C -0.146 4.146 13 C -0.123 4.123 14 C -0.143 4.143 15 C -0.101 4.101 16 C 0.067 3.933 17 N -0.560 5.560 18 C 0.388 3.612 19 N -0.709 5.709 20 C 0.153 3.847 21 C -0.118 4.118 22 H 0.102 0.898 23 C 0.058 3.942 24 O -0.394 6.394 25 C 0.043 3.957 26 H 0.112 0.888 27 C 0.048 3.952 28 N -0.684 5.684 29 C 0.049 3.951 30 C -0.119 4.119 31 H 0.130 0.870 32 H 0.299 0.701 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.411 0.589 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.341 0.659 46 H 0.051 0.949 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.376 -8.853 5.817 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.156 4.156 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.010 3.990 10 C -0.308 4.308 11 C -0.087 4.087 12 C -0.165 4.165 13 C -0.142 4.142 14 C -0.162 4.162 15 C -0.120 4.120 16 C -0.049 4.049 17 N -0.282 5.282 18 C 0.132 3.868 19 N -0.345 5.345 20 C 0.030 3.970 21 C -0.137 4.137 22 H 0.120 0.880 23 C -0.018 4.018 24 O -0.314 6.314 25 C -0.015 4.015 26 H 0.130 0.870 27 C -0.081 4.081 28 N -0.312 5.312 29 C -0.081 4.081 30 C -0.139 4.139 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.248 0.752 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.121 0.879 45 H 0.157 0.843 46 H 0.069 0.931 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.290 -9.897 6.267 14.951 hybrid contribution -2.005 2.159 -0.517 2.991 sum 7.285 -7.739 5.750 12.084 Atomic orbital electron populations 1.69639 1.08611 1.31902 1.34292 1.26568 0.95173 1.03354 0.90535 0.85607 0.78484 0.77755 0.79659 1.18675 1.20170 1.19689 1.19237 0.92651 0.95988 1.39264 0.89787 1.19270 0.93439 0.93126 0.93197 1.21168 0.95160 1.07746 1.06712 1.18712 0.94109 0.97223 0.98674 1.21075 0.96547 0.99301 0.99552 1.20949 0.93083 0.99425 1.00735 1.20892 1.00788 0.96101 0.98440 1.20726 0.92152 1.00187 0.98970 1.18581 0.94870 0.93913 0.97560 1.67140 1.12311 1.28143 1.20579 1.20122 0.88610 0.89223 0.88872 1.44174 1.12299 1.32402 1.45660 1.21196 0.91851 0.88804 0.95165 1.22786 0.99227 0.96018 0.95683 0.88005 1.23134 1.01043 0.93432 0.84205 1.88282 1.84904 1.26389 1.31802 1.24758 0.95663 0.86842 0.94261 0.87031 1.23111 0.87272 0.99211 0.98553 1.61770 1.44979 1.21336 1.03093 1.23026 0.96072 0.99103 0.89849 1.24196 0.94690 0.98740 0.96242 0.85238 0.89046 0.87152 0.86617 0.83790 0.83364 0.85404 0.75180 0.92067 0.92279 0.92440 0.91076 0.90352 0.87869 0.84332 0.93061 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.80 13.93 21.85 0.30 -40.50 16 2 C 0.06 3.09 5.43 85.29 0.46 3.55 16 3 Si 0.96 42.29 24.72 68.60 1.70 43.99 16 4 H -0.26 -11.28 6.22 99.48 0.62 -10.66 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.44 -22.14 9.00 23.37 0.21 -21.93 16 8 H 0.08 4.23 7.12 -2.91 -0.02 4.21 16 9 C 0.02 0.82 5.26 -19.90 -0.10 0.72 16 10 C -0.28 -13.93 7.16 23.25 0.17 -13.77 16 11 C -0.08 -3.87 5.74 -21.26 -0.12 -3.99 16 12 C -0.15 -5.71 9.75 22.42 0.22 -5.49 16 13 C -0.12 -3.96 9.96 22.03 0.22 -3.74 16 14 C -0.14 -4.45 9.95 22.07 0.22 -4.23 16 15 C -0.10 -3.71 9.94 22.35 0.22 -3.49 16 16 C 0.07 3.00 6.60 40.24 0.27 3.26 16 17 N -0.56 -25.04 9.45 -180.98 -1.71 -26.75 16 18 C 0.39 17.41 7.67 135.70 1.04 18.45 16 19 N -0.71 -25.70 5.47 -339.38 -1.86 -27.56 16 20 C 0.15 4.40 4.54 86.38 0.39 4.79 16 21 C -0.12 -2.62 2.87 -9.73 -0.03 -2.65 16 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 23 C 0.06 1.46 6.49 72.42 0.47 1.93 16 24 O -0.39 -9.63 10.80 -148.98 -1.61 -11.24 16 25 C 0.04 0.78 4.66 32.33 0.15 0.94 16 26 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 27 C 0.05 0.79 7.18 86.75 0.62 1.41 16 28 N -0.68 -13.36 7.38 -502.16 -3.70 -17.06 16 29 C 0.05 1.00 6.26 87.25 0.55 1.54 16 30 C -0.12 -2.17 4.12 -7.99 -0.03 -2.20 16 31 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.30 13.47 8.29 -92.71 -0.77 12.70 16 33 H 0.11 5.44 4.50 -2.91 -0.01 5.43 16 34 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.41 14.54 6.74 -92.71 -0.62 13.92 16 39 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.06 1.81 5.86 -2.39 -0.01 1.79 16 41 H 0.06 1.61 7.66 -2.39 -0.02 1.59 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.34 6.71 8.91 -89.70 -0.80 5.91 16 46 H 0.05 1.22 5.32 -2.39 -0.01 1.21 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -59.52 366.55 -2.45 -61.96 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -0.49 Total: 42.05 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 4.92 Total: -24.90 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -6.97 Total: -111.87 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.61 Total: -11.24 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.70 Total: 43.99 kcal Total: -59.52 -2.45 -61.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163102615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.146 kcal (2) G-P(sol) polarization free energy of solvation -59.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds