Wall clock time and date at job start Sat Apr 11 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48504 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47493 * 300.00357 * 3 2 1 6 6 H 1.48508 * 109.47002 * 60.00374 * 3 2 1 7 7 C 1.40063 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00190 * 194.57601 * 7 2 1 9 9 C 1.40903 * 119.99576 * 14.58578 * 7 2 1 10 10 C 1.40267 * 120.70250 * 24.88060 * 9 7 2 11 11 C 1.40234 * 118.13814 * 180.22522 * 10 9 7 12 12 C 1.40842 * 120.57162 * 179.73784 * 11 10 9 13 13 C 1.36136 * 119.70311 * 180.02562 * 12 11 10 14 14 C 1.39299 * 120.77732 * 0.02562 * 13 12 11 15 15 C 1.36285 * 121.06124 * 0.02562 * 14 13 12 16 16 C 1.40431 * 119.97138 * 359.97438 * 15 14 13 17 17 N 1.34031 * 120.11710 * 179.97438 * 16 15 14 18 18 C 1.31366 * 121.96831 * 180.02562 * 17 16 15 19 19 N 1.38080 * 119.76730 * 179.97438 * 18 17 16 20 20 C 1.46502 * 120.00036 * 0.02562 * 19 18 17 21 21 C 1.53003 * 109.46926 * 180.02562 * 20 19 18 22 22 C 1.54268 * 113.17167 * 297.07082 * 21 20 19 23 23 N 1.48506 * 104.73886 * 212.64800 * 22 21 20 24 24 C 1.48504 * 104.20286 * 39.78761 * 23 22 21 25 25 C 1.54261 * 104.74662 * 320.22246 * 24 23 22 26 26 H 1.09001 * 113.17440 * 147.32599 * 25 24 23 27 27 C 1.54395 * 108.77496 * 273.37841 * 25 24 23 28 28 O 1.44380 * 104.91263 * 87.12577 * 27 25 24 29 29 C 1.44377 * 105.26101 * 40.76091 * 28 27 25 30 30 H 0.97005 * 119.99689 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.93106 * 359.97438 * 10 9 7 32 32 H 1.07994 * 120.15072 * 0.04856 * 12 11 10 33 33 H 1.08001 * 119.61295 * 180.02562 * 13 12 11 34 34 H 1.07992 * 119.46915 * 179.97438 * 14 13 12 35 35 H 1.08009 * 120.01020 * 180.02562 * 15 14 13 36 36 H 0.97004 * 120.00379 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.46978 * 59.99941 * 20 19 18 38 38 H 1.08998 * 109.47231 * 299.99304 * 20 19 18 39 39 H 1.09001 * 110.38463 * 331.46127 * 22 21 20 40 40 H 1.08993 * 110.38298 * 93.82838 * 22 21 20 41 41 H 1.00902 * 110.99863 * 159.33462 * 23 22 21 42 42 H 1.09004 * 110.38105 * 201.40077 * 24 23 22 43 43 H 1.08996 * 110.38232 * 79.04410 * 24 23 22 44 44 H 1.08996 * 110.35316 * 328.26321 * 27 25 24 45 45 H 1.08998 * 110.34935 * 205.98085 * 27 25 24 46 46 H 1.08999 * 110.35439 * 200.38700 * 29 28 27 47 47 H 1.09009 * 110.34958 * 78.10978 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.7019 1.3463 -0.0006 5 1 1.8832 2.3965 -1.2124 6 1 1.8832 2.3964 1.2126 7 6 2.0082 -1.2130 -0.0005 8 1 3.0621 -1.2281 0.2348 9 6 1.3377 -2.4134 -0.3084 10 6 0.1753 -2.4034 -1.0934 11 6 -0.4513 -3.6287 -1.3628 12 6 -1.6243 -3.6776 -2.1408 13 6 -2.2183 -4.8767 -2.3910 14 6 -1.6801 -6.0580 -1.8858 15 6 -0.5470 -6.0470 -1.1285 16 6 0.0969 -4.8312 -0.8470 17 7 1.2111 -4.8170 -0.1021 18 6 1.8424 -3.7010 0.1838 19 7 2.9865 -3.7391 0.9559 20 6 3.4927 -5.0210 1.4526 21 6 4.7610 -4.7843 2.2750 22 6 5.9171 -4.1837 1.4487 23 7 7.1489 -4.7483 2.0563 24 6 6.7931 -6.1581 2.3582 25 6 5.3421 -6.0942 2.8781 26 1 4.7548 -6.9755 2.6201 27 6 5.3702 -5.8214 4.3975 28 8 5.4193 -4.3833 4.5160 29 6 4.5131 -3.8878 3.5072 30 1 -0.4850 0.8401 0.0004 31 1 -0.2281 -1.4776 -1.4762 32 1 -2.0504 -2.7680 -2.5376 33 1 -3.1175 -4.9126 -2.9881 34 1 -2.1689 -6.9975 -2.0969 35 1 -0.1441 -6.9732 -0.7457 36 1 3.4552 -2.9170 1.1694 37 1 3.7223 -5.6723 0.6093 38 1 2.7360 -5.4919 2.0801 39 1 5.8352 -4.4871 0.4049 40 1 5.9173 -3.0969 1.5301 41 1 7.9242 -4.7010 1.4123 42 1 7.4541 -6.5605 3.1259 43 1 6.8462 -6.7650 1.4544 44 1 6.2566 -6.2693 4.8468 45 1 4.4677 -6.2100 4.8692 46 1 4.7401 -2.8481 3.2714 47 1 3.4810 -3.9841 3.8445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163153317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:10 Heat of formation + Delta-G solvation = 10.246958 kcal Electronic energy + Delta-G solvation = -29545.151578 eV Core-core repulsion = 25691.828148 eV Total energy + Delta-G solvation = -3853.323430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.72585 -39.11936 -36.76475 -36.08217 -34.61481 -33.80317 -31.50580 -31.09817 -30.74756 -29.25694 -28.04075 -26.02727 -25.56039 -25.23110 -23.82404 -21.92194 -21.78859 -20.93249 -20.40028 -19.38924 -18.18019 -17.21121 -16.53166 -16.08207 -15.90066 -15.52106 -15.43607 -15.25997 -14.77223 -14.33186 -14.12464 -13.73501 -13.64338 -13.60810 -13.20445 -12.98188 -12.90382 -12.78658 -12.46233 -11.98806 -11.84547 -11.67494 -11.55420 -11.43602 -11.34560 -11.11401 -10.95649 -10.89458 -10.79852 -10.71269 -10.59521 -10.39585 -9.89163 -9.63597 -9.54119 -8.85552 -8.76001 -8.65471 -8.22337 -7.24418 -6.95317 -6.61332 -4.45092 1.82022 2.22853 2.88233 2.96472 2.99670 3.50177 3.75000 3.80854 3.91364 4.01833 4.21668 4.35162 4.44335 4.73535 4.85038 4.92627 5.00725 5.12771 5.32907 5.46030 5.52518 5.60042 5.62619 5.66383 5.67387 5.70132 5.76077 5.79885 5.85230 5.87135 5.92007 6.07910 6.09950 6.19478 6.31817 6.45099 6.53012 6.56317 6.80834 6.86486 6.91452 7.07679 7.16153 7.26919 7.43810 7.47142 7.64112 7.79399 7.86847 8.09265 8.23254 8.42644 8.55352 8.69196 9.45977 9.96913 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.004227 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.400991 B = 6622.744008 C = 9135.222675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.438 4.438 8 H 0.079 0.921 9 C 0.044 3.956 10 C -0.186 4.186 11 C -0.066 4.066 12 C -0.119 4.119 13 C -0.141 4.141 14 C -0.165 4.165 15 C -0.089 4.089 16 C 0.085 3.915 17 N -0.560 5.560 18 C 0.385 3.615 19 N -0.718 5.718 20 C 0.165 3.835 21 C -0.106 4.106 22 C 0.050 3.950 23 N -0.656 5.656 24 C 0.045 3.955 25 C -0.120 4.120 26 H 0.100 0.900 27 C 0.058 3.942 28 O -0.361 6.361 29 C 0.063 3.937 30 H 0.284 0.716 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.406 0.594 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.335 0.665 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.093 0.907 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 -7.029 3.204 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.097 0.903 9 C 0.037 3.963 10 C -0.211 4.211 11 C -0.069 4.069 12 C -0.138 4.138 13 C -0.159 4.159 14 C -0.185 4.185 15 C -0.109 4.109 16 C -0.033 4.033 17 N -0.280 5.280 18 C 0.131 3.869 19 N -0.356 5.356 20 C 0.039 3.961 21 C -0.108 4.108 22 C -0.079 4.079 23 N -0.284 5.284 24 C -0.084 4.084 25 C -0.139 4.139 26 H 0.118 0.882 27 C -0.019 4.019 28 O -0.279 6.279 29 C -0.014 4.014 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.243 0.757 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.150 0.850 42 H 0.100 0.900 43 H 0.058 0.942 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.648 -7.450 4.355 12.217 hybrid contribution -0.098 1.281 -1.329 1.849 sum 8.550 -6.169 3.026 10.969 Atomic orbital electron populations 1.69790 1.07602 1.29504 1.33175 1.25895 0.94835 1.01361 0.92646 0.86211 0.80822 0.80709 0.78832 1.18251 1.19548 1.19769 1.19304 0.96505 0.90642 1.40361 0.90344 1.18952 0.94454 0.90057 0.92811 1.21313 1.00022 0.95590 1.04209 1.18657 0.95666 0.94312 0.98312 1.20846 0.95920 0.96926 1.00139 1.20442 1.00114 0.93045 1.02340 1.20306 0.98175 0.97144 1.02863 1.20400 0.95504 0.95941 0.99029 1.18036 0.93139 0.92354 0.99746 1.66985 1.11303 1.28155 1.21562 1.20092 0.87129 0.89916 0.89746 1.43929 1.27173 1.07830 1.56688 1.20842 0.91775 0.87127 0.96329 1.22924 0.95504 0.95587 0.96756 1.22919 0.88777 1.00365 0.95867 1.63666 1.05816 1.14198 1.44744 1.22896 0.95269 0.90497 0.99762 1.23283 0.96224 0.97900 0.96525 0.88161 1.23341 1.01431 0.83099 0.94057 1.89126 1.64666 1.18517 1.55575 1.23403 0.93615 0.98302 0.86081 0.90498 0.84920 0.87492 0.88083 0.87959 0.87480 0.75682 0.92305 0.92064 0.93561 0.89684 0.84991 0.89997 0.94156 0.89258 0.92664 0.88894 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.69 10.83 55.55 0.60 -18.09 16 2 C 0.07 1.65 5.23 -17.31 -0.09 1.56 16 3 Si 0.91 17.10 29.58 -169.99 -5.03 12.07 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 7 C -0.44 -10.24 8.60 -37.89 -0.33 -10.57 16 8 H 0.08 1.68 6.75 -52.49 -0.35 1.33 16 9 C 0.04 1.08 5.74 -104.67 -0.60 0.48 16 10 C -0.19 -4.70 8.52 -38.07 -0.32 -5.02 16 11 C -0.07 -1.60 5.74 -106.77 -0.61 -2.21 16 12 C -0.12 -2.56 9.75 -39.35 -0.38 -2.94 16 13 C -0.14 -2.69 9.96 -39.94 -0.40 -3.09 16 14 C -0.16 -3.11 9.95 -39.89 -0.40 -3.51 16 15 C -0.09 -1.85 9.94 -39.46 -0.39 -2.24 16 16 C 0.08 2.01 6.60 -84.69 -0.56 1.45 16 17 N -0.56 -13.00 9.45 -8.56 -0.08 -13.08 16 18 C 0.38 8.70 7.67 -153.66 -1.18 7.52 16 19 N -0.72 -13.02 5.31 -58.62 -0.31 -13.33 16 20 C 0.16 2.49 4.74 -4.04 -0.02 2.47 16 21 C -0.11 -1.33 0.72 -151.80 -0.11 -1.44 16 22 C 0.05 0.60 6.10 -2.27 -0.01 0.59 16 23 N -0.66 -7.20 7.47 -109.88 -0.82 -8.02 16 24 C 0.05 0.44 6.87 -2.28 -0.02 0.42 16 25 C -0.12 -1.27 3.85 -87.91 -0.34 -1.61 16 26 H 0.10 0.97 7.96 -51.93 -0.41 0.55 16 27 C 0.06 0.63 7.05 37.89 0.27 0.90 16 28 O -0.36 -5.07 11.50 -35.23 -0.41 -5.47 16 29 C 0.06 0.85 6.15 37.88 0.23 1.08 16 30 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 31 H 0.13 3.46 6.16 -52.49 -0.32 3.13 16 32 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 2.03 8.06 -52.48 -0.42 1.61 16 36 H 0.41 6.99 6.31 -40.82 -0.26 6.74 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.58 8.01 -51.93 -0.42 0.16 16 40 H 0.08 1.06 7.51 -51.93 -0.39 0.67 16 41 H 0.33 3.10 8.92 -39.29 -0.35 2.75 16 42 H 0.08 0.72 7.51 -51.93 -0.39 0.33 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.84 7.50 -51.93 -0.39 0.46 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.25 7.50 -51.93 -0.39 0.86 16 47 H 0.06 0.87 7.99 -51.92 -0.41 0.45 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -27.75 373.86 -12.28 -40.02 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -6.61 Total: 16.42 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -5.26 Total: -16.16 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.61 Total: -52.52 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.41 Total: -5.47 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.75 -12.28 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163153317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.270 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds