Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48504 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47493 * 300.00357 * 3 2 1 6 6 H 1.48508 * 109.47002 * 60.00374 * 3 2 1 7 7 C 1.40063 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00190 * 194.57601 * 7 2 1 9 9 C 1.40903 * 119.99576 * 14.58578 * 7 2 1 10 10 C 1.40267 * 120.70250 * 24.88060 * 9 7 2 11 11 C 1.40234 * 118.13814 * 180.22522 * 10 9 7 12 12 C 1.40842 * 120.57162 * 179.73784 * 11 10 9 13 13 C 1.36136 * 119.70311 * 180.02562 * 12 11 10 14 14 C 1.39299 * 120.77732 * 0.02562 * 13 12 11 15 15 C 1.36285 * 121.06124 * 0.02562 * 14 13 12 16 16 C 1.40431 * 119.97138 * 359.97438 * 15 14 13 17 17 N 1.34031 * 120.11710 * 179.97438 * 16 15 14 18 18 C 1.31366 * 121.96831 * 180.02562 * 17 16 15 19 19 N 1.38080 * 119.76730 * 179.97438 * 18 17 16 20 20 C 1.46502 * 120.00036 * 0.02562 * 19 18 17 21 21 C 1.53003 * 109.46926 * 180.02562 * 20 19 18 22 22 C 1.54268 * 113.17167 * 297.07082 * 21 20 19 23 23 N 1.48506 * 104.73886 * 212.64800 * 22 21 20 24 24 C 1.48504 * 104.20286 * 39.78761 * 23 22 21 25 25 C 1.54261 * 104.74662 * 320.22246 * 24 23 22 26 26 H 1.09001 * 113.17440 * 147.32599 * 25 24 23 27 27 C 1.54395 * 108.77496 * 273.37841 * 25 24 23 28 28 O 1.44380 * 104.91263 * 87.12577 * 27 25 24 29 29 C 1.44377 * 105.26101 * 40.76091 * 28 27 25 30 30 H 0.97005 * 119.99689 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.93106 * 359.97438 * 10 9 7 32 32 H 1.07994 * 120.15072 * 0.04856 * 12 11 10 33 33 H 1.08001 * 119.61295 * 180.02562 * 13 12 11 34 34 H 1.07992 * 119.46915 * 179.97438 * 14 13 12 35 35 H 1.08009 * 120.01020 * 180.02562 * 15 14 13 36 36 H 0.97004 * 120.00379 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.46978 * 59.99941 * 20 19 18 38 38 H 1.08998 * 109.47231 * 299.99304 * 20 19 18 39 39 H 1.09001 * 110.38463 * 331.46127 * 22 21 20 40 40 H 1.08993 * 110.38298 * 93.82838 * 22 21 20 41 41 H 1.00902 * 110.99863 * 159.33462 * 23 22 21 42 42 H 1.09004 * 110.38105 * 201.40077 * 24 23 22 43 43 H 1.08996 * 110.38232 * 79.04410 * 24 23 22 44 44 H 1.08996 * 110.35316 * 328.26321 * 27 25 24 45 45 H 1.08998 * 110.34935 * 205.98085 * 27 25 24 46 46 H 1.08999 * 110.35439 * 200.38700 * 29 28 27 47 47 H 1.09009 * 110.34958 * 78.10978 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.7019 1.3463 -0.0006 5 1 1.8832 2.3965 -1.2124 6 1 1.8832 2.3964 1.2126 7 6 2.0082 -1.2130 -0.0005 8 1 3.0621 -1.2281 0.2348 9 6 1.3377 -2.4134 -0.3084 10 6 0.1753 -2.4034 -1.0934 11 6 -0.4513 -3.6287 -1.3628 12 6 -1.6243 -3.6776 -2.1408 13 6 -2.2183 -4.8767 -2.3910 14 6 -1.6801 -6.0580 -1.8858 15 6 -0.5470 -6.0470 -1.1285 16 6 0.0969 -4.8312 -0.8470 17 7 1.2111 -4.8170 -0.1021 18 6 1.8424 -3.7010 0.1838 19 7 2.9865 -3.7391 0.9559 20 6 3.4927 -5.0210 1.4526 21 6 4.7610 -4.7843 2.2750 22 6 5.9171 -4.1837 1.4487 23 7 7.1489 -4.7483 2.0563 24 6 6.7931 -6.1581 2.3582 25 6 5.3421 -6.0942 2.8781 26 1 4.7548 -6.9755 2.6201 27 6 5.3702 -5.8214 4.3975 28 8 5.4193 -4.3833 4.5160 29 6 4.5131 -3.8878 3.5072 30 1 -0.4850 0.8401 0.0004 31 1 -0.2281 -1.4776 -1.4762 32 1 -2.0504 -2.7680 -2.5376 33 1 -3.1175 -4.9126 -2.9881 34 1 -2.1689 -6.9975 -2.0969 35 1 -0.1441 -6.9732 -0.7457 36 1 3.4552 -2.9170 1.1694 37 1 3.7223 -5.6723 0.6093 38 1 2.7360 -5.4919 2.0801 39 1 5.8352 -4.4871 0.4049 40 1 5.9173 -3.0969 1.5301 41 1 7.9242 -4.7010 1.4123 42 1 7.4541 -6.5605 3.1259 43 1 6.8462 -6.7650 1.4544 44 1 6.2566 -6.2693 4.8468 45 1 4.4677 -6.2100 4.8692 46 1 4.7401 -2.8481 3.2714 47 1 3.4810 -3.9841 3.8445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163153317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = -6.699189 kcal Electronic energy + Delta-G solvation = -29545.886418 eV Core-core repulsion = 25691.828148 eV Total energy + Delta-G solvation = -3854.058270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.72762 -40.78487 -38.31073 -37.09686 -36.20271 -35.36236 -33.22582 -32.36374 -31.66510 -30.92157 -29.59192 -27.29113 -26.96465 -26.53364 -24.78584 -23.53923 -23.38193 -22.34899 -21.67338 -20.45895 -19.81662 -18.67326 -17.94133 -17.46130 -17.25300 -16.79661 -16.51415 -16.35010 -16.29761 -15.70771 -15.37138 -15.24449 -14.80657 -14.76406 -14.69551 -14.51409 -14.27360 -14.11017 -13.80066 -13.53608 -13.35692 -13.00597 -12.93525 -12.74479 -12.51490 -12.43707 -12.25133 -12.18758 -12.04586 -11.94596 -11.82103 -11.67084 -11.56359 -11.25913 -10.64769 -10.60068 -10.30874 -9.98961 -9.50310 -8.98408 -8.67754 -8.26066 -6.25932 0.14174 0.54118 1.35941 1.40571 1.53813 1.74246 2.16211 2.34648 2.43871 2.94291 3.01577 3.30320 3.32349 3.51951 3.82898 3.85829 3.91258 4.04159 4.09242 4.20545 4.23216 4.34138 4.45686 4.49132 4.50314 4.61844 4.70272 4.73568 4.75498 4.77549 4.79527 4.82043 4.87085 4.88562 4.89549 4.94059 5.06158 5.09999 5.26093 5.44218 5.60318 5.69209 5.71021 5.84914 5.89138 5.96558 6.03426 6.28643 6.32366 6.40021 6.63462 6.69199 6.78222 6.94865 7.72644 8.26729 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.004227 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.400991 B = 6622.744008 C = 9135.222675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.457 4.457 8 H 0.091 0.909 9 C 0.018 3.982 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.140 4.140 13 C -0.130 4.130 14 C -0.151 4.151 15 C -0.102 4.102 16 C 0.058 3.942 17 N -0.567 5.567 18 C 0.377 3.623 19 N -0.707 5.707 20 C 0.173 3.827 21 C -0.100 4.100 22 C 0.053 3.947 23 N -0.663 5.663 24 C 0.047 3.953 25 C -0.116 4.116 26 H 0.113 0.887 27 C 0.053 3.947 28 O -0.379 6.379 29 C 0.064 3.936 30 H 0.289 0.711 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.409 0.591 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.345 0.655 42 H 0.097 0.903 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.364 -8.540 3.254 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.486 4.486 8 H 0.109 0.891 9 C 0.012 3.988 10 C -0.242 4.242 11 C -0.097 4.097 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.170 4.170 15 C -0.122 4.122 16 C -0.059 4.059 17 N -0.289 5.289 18 C 0.122 3.878 19 N -0.344 5.344 20 C 0.049 3.951 21 C -0.101 4.101 22 C -0.076 4.076 23 N -0.292 5.292 24 C -0.082 4.082 25 C -0.135 4.135 26 H 0.131 0.869 27 C -0.023 4.023 28 O -0.298 6.298 29 C -0.013 4.013 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.247 0.753 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.162 0.838 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.491 -8.987 4.413 13.796 hybrid contribution -0.440 1.623 -1.354 2.159 sum 9.051 -7.364 3.059 12.063 Atomic orbital electron populations 1.69877 1.09232 1.30631 1.33945 1.26773 0.95435 1.04517 0.91654 0.85144 0.79828 0.76133 0.78670 1.17182 1.19507 1.19328 1.19608 0.97154 0.90973 1.40870 0.89072 1.19302 0.94840 0.91499 0.93199 1.21257 1.01438 0.95555 1.05956 1.18917 0.96980 0.94229 0.99556 1.21030 0.95745 0.98501 1.00677 1.20889 1.00661 0.92029 1.01287 1.20806 0.96916 0.98796 1.00502 1.20682 0.96296 0.95469 0.99756 1.18536 0.93754 0.93368 1.00281 1.67061 1.11642 1.28064 1.22152 1.20247 0.88158 0.89343 0.90099 1.43975 1.25746 1.09236 1.55445 1.20851 0.92639 0.85496 0.96163 1.22777 0.94371 0.96932 0.96044 1.22814 0.89271 1.00023 0.95513 1.63655 1.05526 1.15120 1.44942 1.22961 0.94688 0.89905 1.00666 1.23334 0.96953 0.97071 0.96162 0.86937 1.23552 1.02748 0.81615 0.94415 1.89105 1.64598 1.20382 1.55669 1.23321 0.93052 0.98386 0.86507 0.90009 0.86862 0.87131 0.84215 0.83705 0.85826 0.75319 0.92701 0.92980 0.94045 0.90411 0.83817 0.88465 0.93101 0.87355 0.92025 0.89327 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.81 10.83 21.85 0.24 -40.57 16 2 C 0.03 1.53 5.23 85.29 0.45 1.98 16 3 Si 0.98 35.49 29.58 68.60 2.03 37.52 16 4 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 6 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.46 -22.12 8.60 23.37 0.20 -21.92 16 8 H 0.09 4.00 6.75 -2.91 -0.02 3.98 16 9 C 0.02 0.94 5.74 -19.89 -0.11 0.83 16 10 C -0.22 -11.60 8.52 23.25 0.20 -11.41 16 11 C -0.09 -4.68 5.74 -21.26 -0.12 -4.81 16 12 C -0.14 -6.08 9.75 22.42 0.22 -5.86 16 13 C -0.13 -4.68 9.96 22.04 0.22 -4.46 16 14 C -0.15 -5.24 9.95 22.07 0.22 -5.02 16 15 C -0.10 -4.13 9.94 22.35 0.22 -3.91 16 16 C 0.06 2.78 6.60 40.24 0.27 3.05 16 17 N -0.57 -27.03 9.45 -180.99 -1.71 -28.74 16 18 C 0.38 17.66 7.67 135.71 1.04 18.70 16 19 N -0.71 -26.31 5.31 -339.38 -1.80 -28.11 16 20 C 0.17 5.26 4.74 86.38 0.41 5.67 16 21 C -0.10 -2.43 0.72 -50.43 -0.04 -2.47 16 22 C 0.05 1.25 6.10 86.42 0.53 1.78 16 23 N -0.66 -13.37 7.47 -501.55 -3.75 -17.12 16 24 C 0.05 0.79 6.87 86.42 0.59 1.39 16 25 C -0.12 -2.24 3.85 -9.04 -0.03 -2.27 16 26 H 0.11 1.92 7.96 -2.39 -0.02 1.90 16 27 C 0.05 1.06 7.05 72.46 0.51 1.57 16 28 O -0.38 -10.26 11.50 -148.98 -1.71 -11.97 16 29 C 0.06 1.73 6.15 72.45 0.45 2.17 16 30 H 0.29 13.18 8.30 -92.70 -0.77 12.41 16 31 H 0.11 6.35 6.16 -2.91 -0.02 6.33 16 32 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 35 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.41 14.50 6.31 -92.71 -0.59 13.91 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.00 8.01 -2.39 -0.02 0.99 16 40 H 0.08 1.92 7.51 -2.39 -0.02 1.91 16 41 H 0.35 5.74 8.92 -89.69 -0.80 4.94 16 42 H 0.10 1.39 7.51 -2.38 -0.02 1.37 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 1.75 7.50 -2.39 -0.02 1.73 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 2.41 7.50 -2.39 -0.02 2.39 16 47 H 0.05 1.45 7.99 -2.38 -0.02 1.43 16 Total: -1.00 -62.42 373.86 -1.87 -64.29 By element: Atomic # 1 Polarization: 50.08 SS G_CDS: -0.37 Total: 49.71 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 5.21 Total: -24.99 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -7.02 Total: -114.55 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.71 Total: -11.97 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Total: -62.42 -1.87 -64.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163153317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.586 kcal (2) G-P(sol) polarization free energy of solvation -62.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds