Wall clock time and date at job start Sat Apr 11 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47126 * 240.00243 * 3 2 1 5 5 H 1.48504 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46814 * 119.99877 * 3 2 1 7 7 C 1.38808 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00115 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99874 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.53034 * 109.46274 * 185.00105 * 11 10 9 13 13 C 1.53194 * 109.31458 * 178.61364 * 12 11 10 14 14 N 1.46919 * 108.77415 * 54.63287 * 13 12 11 15 15 C 1.34779 * 120.63106 * 126.37219 * 14 13 12 16 16 O 1.21542 * 120.00053 * 3.98726 * 15 14 13 17 17 C 1.47907 * 120.00004 * 183.98502 * 15 14 13 18 18 C 1.38890 * 121.10976 * 306.61843 * 17 15 14 19 19 C 1.39275 * 119.57433 * 180.02562 * 18 17 15 20 20 N 1.30997 * 121.88457 * 359.73949 * 19 18 17 21 21 C 1.33535 * 121.82839 * 359.97438 * 20 19 18 22 22 C 1.40710 * 120.97384 * 179.97438 * 21 20 19 23 23 C 1.36070 * 119.73949 * 180.02562 * 22 21 20 24 24 C 1.39345 * 121.05384 * 0.02637 * 23 22 21 25 25 C 1.36241 * 120.84157 * 359.94982 * 24 23 22 26 26 C 1.40103 * 119.64099 * 0.05191 * 25 24 23 27 27 C 1.46928 * 118.74153 * 306.64374 * 14 13 12 28 28 C 1.52762 * 109.00568 * 53.30764 * 27 14 13 29 29 H 0.97005 * 120.00262 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00028 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47674 * 59.99801 * 10 9 7 32 32 H 1.09006 * 109.47377 * 299.99852 * 10 9 7 33 33 H 1.09002 * 109.44525 * 304.96157 * 11 10 9 34 34 H 1.08999 * 109.49884 * 58.65718 * 12 11 10 35 35 H 1.09008 * 109.52595 * 298.58132 * 12 11 10 36 36 H 1.08994 * 109.58128 * 294.84429 * 13 12 11 37 37 H 1.08999 * 109.70474 * 174.49193 * 13 12 11 38 38 H 1.07995 * 120.21284 * 359.73621 * 18 17 15 39 39 H 1.08001 * 119.05677 * 179.75467 * 19 18 17 40 40 H 1.07994 * 120.13529 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.46680 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.57587 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.17980 * 180.02562 * 25 24 23 44 44 H 1.08992 * 109.59151 * 173.14835 * 27 14 13 45 45 H 1.09002 * 109.58424 * 293.57795 * 27 14 13 46 46 H 1.09000 * 109.56636 * 185.55225 * 28 27 14 47 47 H 1.09004 * 109.35970 * 65.50597 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 6 1.8249 -6.1414 0.1246 13 6 0.8245 -7.3011 0.1585 14 7 -0.0411 -7.2135 -1.0254 15 6 -0.1820 -8.2683 -1.8526 16 8 0.3517 -9.3267 -1.5840 17 6 -0.9861 -8.1378 -3.0871 18 6 -2.2928 -7.6689 -3.0462 19 6 -3.0211 -7.5592 -4.2282 20 7 -2.5081 -7.8821 -5.3895 21 6 -1.2571 -8.3343 -5.5055 22 6 -0.7243 -8.6764 -6.7621 23 6 0.5536 -9.1353 -6.8512 24 6 1.3484 -9.2739 -5.7151 25 6 0.8666 -8.9520 -4.4821 26 6 -0.4450 -8.4765 -4.3531 27 6 -0.7455 -5.9524 -1.2939 28 6 0.2682 -4.8097 -1.3084 29 1 -0.4851 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6847 -3.7146 0.8894 32 1 2.6846 -3.7146 -0.8906 33 1 0.3799 -4.7130 0.8409 34 1 2.4097 -6.1383 1.0445 35 1 2.4914 -6.2607 -0.7297 36 1 0.2172 -7.2334 1.0610 37 1 1.3611 -8.2498 0.1495 38 1 -2.7428 -7.3955 -2.1033 39 1 -4.0379 -7.1974 -4.1862 40 1 -1.3272 -8.5753 -7.6524 41 1 0.9579 -9.3970 -7.8179 42 1 2.3595 -9.6408 -5.8134 43 1 1.4921 -9.0633 -3.6087 44 1 -1.2426 -6.0104 -2.2622 45 1 -1.4835 -5.7725 -0.5122 46 1 -0.2551 -3.8588 -1.4086 47 1 0.9489 -4.9411 -2.1496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205640542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:04 Heat of formation + Delta-G solvation = 32.809415 kcal Electronic energy + Delta-G solvation = -28996.879668 eV Core-core repulsion = 25144.534619 eV Total energy + Delta-G solvation = -3852.345048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.47187 -39.96073 -37.82417 -37.37344 -35.04051 -33.95025 -32.82002 -31.30651 -30.84794 -30.41962 -30.14238 -27.03441 -25.27025 -24.01139 -23.85226 -23.24138 -22.87757 -21.60638 -20.40441 -19.37881 -18.57104 -17.75885 -17.40906 -17.07267 -16.43313 -15.72063 -15.43029 -14.98580 -14.81926 -14.56239 -14.48581 -14.30913 -14.17570 -13.93562 -13.83649 -13.60164 -13.48788 -13.04632 -12.86105 -12.48959 -12.31973 -12.05351 -11.92768 -11.84118 -11.66997 -11.26118 -11.03677 -10.84975 -10.81687 -10.54888 -10.47994 -10.36774 -10.24416 -10.04259 -9.68119 -9.63437 -9.07415 -8.89498 -8.80275 -8.52830 -6.94599 -5.79546 -3.07775 -0.09565 0.49285 1.49963 2.36785 2.59459 2.80071 3.42274 3.46788 3.47608 3.80043 3.94288 4.03061 4.36716 4.41169 4.53066 4.56226 4.76568 4.82137 4.83235 4.93702 4.99234 5.02330 5.09207 5.18701 5.26290 5.28748 5.42236 5.49094 5.51827 5.57964 5.68399 5.72366 5.72541 5.86440 5.88119 6.01795 6.02689 6.12072 6.15616 6.17948 6.21828 6.32691 6.40385 6.52160 6.56246 6.75283 6.86748 7.13846 7.57112 7.67287 7.83259 8.39865 9.51010 10.08567 10.43304 11.43365 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002668 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.442956 B =10493.913783 C =11104.673663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.595 5.595 15 C 0.561 3.439 16 O -0.533 6.533 17 C -0.057 4.057 18 C -0.145 4.145 19 C 0.131 3.869 20 N -0.462 5.462 21 C 0.128 3.872 22 C -0.094 4.094 23 C -0.098 4.098 24 C -0.113 4.113 25 C -0.090 4.090 26 C -0.069 4.069 27 C 0.094 3.906 28 C -0.125 4.125 29 H 0.256 0.744 30 H 0.383 0.617 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.168 0.832 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -20.454 -8.852 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.327 5.327 15 C 0.348 3.652 16 O -0.410 6.410 17 C -0.069 4.069 18 C -0.165 4.165 19 C -0.041 4.041 20 N -0.171 5.171 21 C 0.007 3.993 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.071 4.071 27 C -0.028 4.028 28 C -0.163 4.163 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.527 -20.830 -9.510 23.168 hybrid contribution 0.597 1.071 0.849 1.491 sum -2.930 -19.759 -8.661 21.772 Atomic orbital electron populations 1.69638 1.05082 1.25776 1.57832 1.24721 0.95530 0.97654 1.03026 0.86272 0.78543 0.83548 0.77857 1.21279 1.21666 1.21292 1.19185 0.91008 0.84229 1.42678 0.91326 1.42357 1.05788 0.99957 1.89504 1.20662 0.93135 0.85355 0.97771 1.21315 0.97910 0.94445 0.97632 1.21925 0.97688 0.93983 1.02905 1.21709 0.92466 1.00277 0.86432 1.48111 1.46432 1.12606 1.25560 1.18114 0.80580 0.83973 0.82504 1.90791 1.48536 1.27147 1.74533 1.20341 0.95181 0.98100 0.93264 1.22443 0.93995 0.98959 1.01108 1.22937 1.00045 0.94278 0.86811 1.67818 1.11731 1.09829 1.27678 1.18840 0.89711 0.97736 0.93053 1.20826 0.95668 0.98956 0.95806 1.20970 0.93755 0.97990 0.99079 1.21007 1.00373 0.99477 0.92209 1.21126 0.94017 0.96959 0.98749 1.18578 0.95758 1.00583 0.92231 1.22099 0.95389 0.82920 1.02358 1.21853 0.98020 0.98166 0.98291 0.93469 0.78283 0.96320 0.96467 0.90832 0.90342 0.91541 0.91021 0.89039 0.83574 0.81515 0.84413 0.85022 0.85209 0.84693 0.89495 0.90533 0.89087 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -17.91 5.32 -59.90 -0.32 -18.23 16 10 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 11 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 12 C -0.13 -1.54 5.36 -26.61 -0.14 -1.69 16 13 C 0.11 1.29 6.43 -3.71 -0.02 1.27 16 14 N -0.59 -7.15 2.98 -174.13 -0.52 -7.67 16 15 C 0.56 7.44 6.57 -12.30 -0.08 7.36 16 16 O -0.53 -8.38 15.22 5.33 0.08 -8.30 16 17 C -0.06 -0.70 4.95 -104.34 -0.52 -1.22 16 18 C -0.14 -1.41 7.52 -38.95 -0.29 -1.70 16 19 C 0.13 1.24 11.14 -17.52 -0.20 1.05 16 20 N -0.46 -5.45 10.30 -11.01 -0.11 -5.56 16 21 C 0.13 1.56 6.61 -84.87 -0.56 1.00 16 22 C -0.09 -0.94 9.99 -39.43 -0.39 -1.33 16 23 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 24 C -0.11 -1.06 9.96 -39.89 -0.40 -1.46 16 25 C -0.09 -1.06 9.25 -39.60 -0.37 -1.42 16 26 C -0.07 -0.87 5.76 -106.52 -0.61 -1.48 16 27 C 0.09 1.07 5.53 -3.93 -0.02 1.05 16 28 C -0.13 -1.78 5.23 -26.84 -0.14 -1.92 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.70 6.84 -40.82 -0.28 9.42 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.08 7.02 -51.93 -0.36 0.71 16 38 H 0.15 1.08 7.38 -52.49 -0.39 0.69 16 39 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.14 1.67 6.49 -52.49 -0.34 1.33 16 44 H 0.09 0.92 4.73 -51.93 -0.25 0.68 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.49 7.15 -51.93 -0.37 1.12 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -33.31 378.43 -10.68 -44.00 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.61 Total: 7.36 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -4.61 Total: -7.53 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.23 Total: -58.41 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.31 -10.68 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205640542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.805 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds