Wall clock time and date at job start Sat Apr 11 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47126 * 240.00243 * 3 2 1 5 5 H 1.48504 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46814 * 119.99877 * 3 2 1 7 7 C 1.38808 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00115 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99874 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.53034 * 109.46274 * 185.00105 * 11 10 9 13 13 C 1.53194 * 109.31458 * 178.61364 * 12 11 10 14 14 N 1.46919 * 108.77415 * 54.63287 * 13 12 11 15 15 C 1.34779 * 120.63106 * 126.37219 * 14 13 12 16 16 O 1.21542 * 120.00053 * 3.98726 * 15 14 13 17 17 C 1.47907 * 120.00004 * 183.98502 * 15 14 13 18 18 C 1.38890 * 121.10976 * 306.61843 * 17 15 14 19 19 C 1.39275 * 119.57433 * 180.02562 * 18 17 15 20 20 N 1.30997 * 121.88457 * 359.73949 * 19 18 17 21 21 C 1.33535 * 121.82839 * 359.97438 * 20 19 18 22 22 C 1.40710 * 120.97384 * 179.97438 * 21 20 19 23 23 C 1.36070 * 119.73949 * 180.02562 * 22 21 20 24 24 C 1.39345 * 121.05384 * 0.02637 * 23 22 21 25 25 C 1.36241 * 120.84157 * 359.94982 * 24 23 22 26 26 C 1.40103 * 119.64099 * 0.05191 * 25 24 23 27 27 C 1.46928 * 118.74153 * 306.64374 * 14 13 12 28 28 C 1.52762 * 109.00568 * 53.30764 * 27 14 13 29 29 H 0.97005 * 120.00262 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00028 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47674 * 59.99801 * 10 9 7 32 32 H 1.09006 * 109.47377 * 299.99852 * 10 9 7 33 33 H 1.09002 * 109.44525 * 304.96157 * 11 10 9 34 34 H 1.08999 * 109.49884 * 58.65718 * 12 11 10 35 35 H 1.09008 * 109.52595 * 298.58132 * 12 11 10 36 36 H 1.08994 * 109.58128 * 294.84429 * 13 12 11 37 37 H 1.08999 * 109.70474 * 174.49193 * 13 12 11 38 38 H 1.07995 * 120.21284 * 359.73621 * 18 17 15 39 39 H 1.08001 * 119.05677 * 179.75467 * 19 18 17 40 40 H 1.07994 * 120.13529 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.46680 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.57587 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.17980 * 180.02562 * 25 24 23 44 44 H 1.08992 * 109.59151 * 173.14835 * 27 14 13 45 45 H 1.09002 * 109.58424 * 293.57795 * 27 14 13 46 46 H 1.09000 * 109.56636 * 185.55225 * 28 27 14 47 47 H 1.09004 * 109.35970 * 65.50597 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 6 1.8249 -6.1414 0.1246 13 6 0.8245 -7.3011 0.1585 14 7 -0.0411 -7.2135 -1.0254 15 6 -0.1820 -8.2683 -1.8526 16 8 0.3517 -9.3267 -1.5840 17 6 -0.9861 -8.1378 -3.0871 18 6 -2.2928 -7.6689 -3.0462 19 6 -3.0211 -7.5592 -4.2282 20 7 -2.5081 -7.8821 -5.3895 21 6 -1.2571 -8.3343 -5.5055 22 6 -0.7243 -8.6764 -6.7621 23 6 0.5536 -9.1353 -6.8512 24 6 1.3484 -9.2739 -5.7151 25 6 0.8666 -8.9520 -4.4821 26 6 -0.4450 -8.4765 -4.3531 27 6 -0.7455 -5.9524 -1.2939 28 6 0.2682 -4.8097 -1.3084 29 1 -0.4851 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6847 -3.7146 0.8894 32 1 2.6846 -3.7146 -0.8906 33 1 0.3799 -4.7130 0.8409 34 1 2.4097 -6.1383 1.0445 35 1 2.4914 -6.2607 -0.7297 36 1 0.2172 -7.2334 1.0610 37 1 1.3611 -8.2498 0.1495 38 1 -2.7428 -7.3955 -2.1033 39 1 -4.0379 -7.1974 -4.1862 40 1 -1.3272 -8.5753 -7.6524 41 1 0.9579 -9.3970 -7.8179 42 1 2.3595 -9.6408 -5.8134 43 1 1.4921 -9.0633 -3.6087 44 1 -1.2426 -6.0104 -2.2622 45 1 -1.4835 -5.7725 -0.5122 46 1 -0.2551 -3.8588 -1.4086 47 1 0.9489 -4.9411 -2.1496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205640542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:03 Heat of formation + Delta-G solvation = 13.067726 kcal Electronic energy + Delta-G solvation = -28997.735732 eV Core-core repulsion = 25144.534619 eV Total energy + Delta-G solvation = -3853.201112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32140 -40.91380 -38.99654 -38.12354 -36.60622 -34.95605 -34.27789 -32.46685 -32.00090 -31.60725 -31.00221 -28.43240 -26.41929 -25.25888 -24.82977 -24.27237 -23.99400 -22.87635 -21.57271 -20.38509 -19.43492 -19.09599 -18.56486 -18.20918 -17.42681 -16.74855 -16.54320 -16.34981 -15.80016 -15.62874 -15.50117 -15.35967 -15.31344 -15.27936 -14.97117 -14.68299 -14.55775 -14.16696 -14.08869 -13.81587 -13.57051 -13.16522 -12.95529 -12.82353 -12.73429 -12.61030 -12.38784 -12.28124 -12.21756 -11.97290 -11.73083 -11.68296 -11.64755 -11.35746 -11.24464 -10.91518 -10.50332 -9.83926 -9.81403 -9.32782 -8.98188 -7.94980 -5.22773 -0.89483 -0.26918 0.67093 1.39609 1.47449 1.49629 1.55818 1.77127 1.94245 2.56137 3.00201 3.09466 3.28779 3.38374 3.58657 3.63936 3.71681 3.74653 3.81327 3.85650 4.00979 4.12187 4.16126 4.26240 4.30224 4.34883 4.37343 4.46413 4.53091 4.54627 4.66914 4.75135 4.75928 4.82003 4.92444 4.96241 4.98117 5.02803 5.05384 5.13509 5.21510 5.30169 5.40136 5.42997 5.45214 5.49496 5.51966 5.80870 6.14812 6.27977 6.78879 6.84130 7.34884 8.10817 8.35289 9.28060 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002668 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.442956 B =10493.913783 C =11104.673663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.741 5.741 10 C 0.157 3.843 11 C -0.083 4.083 12 C -0.116 4.116 13 C 0.115 3.885 14 N -0.592 5.592 15 C 0.564 3.436 16 O -0.564 6.564 17 C -0.083 4.083 18 C -0.134 4.134 19 C 0.130 3.870 20 N -0.480 5.480 21 C 0.105 3.895 22 C -0.103 4.103 23 C -0.093 4.093 24 C -0.106 4.106 25 C -0.118 4.118 26 C -0.089 4.089 27 C 0.103 3.897 28 C -0.119 4.119 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.020 0.980 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.172 0.828 39 H 0.203 0.797 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.154 0.846 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.068 0.932 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 -20.956 -9.320 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.031 3.969 11 C -0.102 4.102 12 C -0.155 4.155 13 C -0.007 4.007 14 N -0.324 5.324 15 C 0.352 3.648 16 O -0.443 6.443 17 C -0.094 4.094 18 C -0.154 4.154 19 C -0.042 4.042 20 N -0.188 5.188 21 C -0.016 4.016 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.137 4.137 26 C -0.091 4.091 27 C -0.019 4.019 28 C -0.157 4.157 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.189 0.811 39 H 0.220 0.780 40 H 0.171 0.829 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.138 0.862 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.086 0.914 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.695 -21.351 -9.976 23.854 hybrid contribution 0.701 1.189 0.959 1.680 sum -2.994 -20.162 -9.018 22.289 Atomic orbital electron populations 1.69781 1.06380 1.26146 1.59314 1.25494 0.96409 1.00833 1.03645 0.85272 0.77299 0.79467 0.78085 1.20636 1.21976 1.20508 1.19566 0.91385 0.85590 1.41489 0.91145 1.42529 1.05690 1.00927 1.89329 1.20808 0.93895 0.85055 0.97184 1.21197 0.97126 0.93892 0.98003 1.21834 0.97613 0.92676 1.03366 1.21746 0.92474 0.99547 0.86921 1.48147 1.46300 1.12426 1.25480 1.18281 0.80199 0.83638 0.82678 1.90763 1.49954 1.28375 1.75250 1.20385 0.96271 1.00050 0.92703 1.22760 0.92945 0.97329 1.02387 1.23553 1.01332 0.93263 0.86085 1.67868 1.11723 1.10415 1.28800 1.19173 0.90093 0.98594 0.93729 1.21145 0.96525 0.98848 0.95648 1.21348 0.93053 0.96619 1.00202 1.21361 1.01500 0.97902 0.91630 1.21146 0.94125 0.99056 0.99354 1.18784 0.96301 1.01267 0.92781 1.22071 0.94661 0.81368 1.03778 1.21725 0.98217 0.98337 0.97452 0.93935 0.79051 0.96184 0.97178 0.90553 0.88868 0.92306 0.89155 0.89267 0.81077 0.78031 0.82899 0.81541 0.82835 0.86219 0.88542 0.88442 0.91357 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -36.59 5.32 -343.44 -1.83 -38.42 16 10 C 0.16 6.06 5.65 86.38 0.49 6.55 16 11 C -0.08 -2.41 2.19 -10.77 -0.02 -2.44 16 12 C -0.12 -2.71 5.36 30.67 0.16 -2.55 16 13 C 0.11 2.46 6.43 86.36 0.55 3.01 16 14 N -0.59 -13.66 2.98 -823.10 -2.45 -16.11 16 15 C 0.56 14.87 6.57 86.80 0.57 15.44 16 16 O -0.56 -18.03 15.22 -3.85 -0.06 -18.09 16 17 C -0.08 -2.00 4.95 -19.68 -0.10 -2.10 16 18 C -0.13 -2.42 7.52 22.68 0.17 -2.24 16 19 C 0.13 2.24 11.14 85.07 0.95 3.19 16 20 N -0.48 -10.86 10.30 -188.73 -1.94 -12.80 16 21 C 0.11 2.52 6.61 40.34 0.27 2.79 16 22 C -0.10 -1.95 9.99 22.37 0.22 -1.73 16 23 C -0.09 -1.41 9.94 22.03 0.22 -1.20 16 24 C -0.11 -1.90 9.96 22.07 0.22 -1.68 16 25 C -0.12 -2.85 9.25 22.26 0.21 -2.65 16 26 C -0.09 -2.27 5.76 -21.09 -0.12 -2.39 16 27 C 0.10 2.21 5.53 86.22 0.48 2.69 16 28 C -0.12 -3.36 5.23 30.53 0.16 -3.20 16 29 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 30 H 0.38 19.36 6.84 -92.71 -0.63 18.72 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.09 2.02 7.02 -2.39 -0.02 2.01 16 38 H 0.17 2.09 7.38 -2.91 -0.02 2.07 16 39 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.12 3.16 6.49 -2.91 -0.02 3.14 16 44 H 0.10 1.92 4.73 -2.39 -0.01 1.91 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 46 H 0.07 2.27 7.15 -2.39 -0.02 2.25 16 47 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -72.97 378.43 2.12 -70.85 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.36 Total: 29.31 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 5.73 Total: -4.99 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -5.94 Total: -124.75 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.06 Total: -18.09 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.97 2.12 -70.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205640542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.918 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds