Wall clock time and date at job start Sat Apr 11 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47026 * 269.99798 * 3 2 1 5 5 H 1.48493 * 109.47221 * 30.00231 * 3 2 1 6 6 H 1.48501 * 109.46894 * 150.00167 * 3 2 1 7 7 C 1.38808 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00283 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47471 * 180.02562 * 10 9 7 12 12 C 1.53035 * 109.46359 * 174.99934 * 11 10 9 13 13 C 1.53190 * 109.31508 * 181.38200 * 12 11 10 14 14 N 1.46927 * 108.89344 * 305.29525 * 13 12 11 15 15 C 1.34782 * 120.62920 * 233.67908 * 14 13 12 16 16 O 1.21548 * 119.99787 * 355.87581 * 15 14 13 17 17 C 1.47883 * 119.99836 * 175.87680 * 15 14 13 18 18 C 1.40597 * 119.73159 * 50.60074 * 17 15 14 19 19 C 1.35847 * 120.95344 * 179.97438 * 18 17 15 20 20 C 1.40489 * 119.87994 * 359.97438 * 19 18 17 21 21 C 1.40487 * 121.83543 * 180.02562 * 20 19 18 22 22 N 1.31220 * 119.93726 * 179.97438 * 21 20 19 23 23 C 1.32547 * 122.80111 * 359.97438 * 22 21 20 24 24 C 1.36219 * 121.85231 * 0.02562 * 23 22 21 25 25 C 1.40763 * 118.67473 * 359.97438 * 24 23 22 26 26 C 1.38536 * 119.72945 * 230.31897 * 17 15 14 27 27 C 1.47202 * 118.55792 * 53.53857 * 14 13 12 28 28 C 1.53041 * 109.45851 * 295.06672 * 11 10 9 29 29 H 0.97005 * 119.99891 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00276 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47555 * 59.99763 * 10 9 7 32 32 H 1.09005 * 109.47010 * 300.00099 * 10 9 7 33 33 H 1.09006 * 109.46221 * 55.02272 * 11 10 9 34 34 H 1.09007 * 109.49928 * 61.43320 * 12 11 10 35 35 H 1.09000 * 109.52409 * 301.34969 * 12 11 10 36 36 H 1.08995 * 109.58731 * 65.15491 * 13 12 11 37 37 H 1.09005 * 109.59196 * 185.43427 * 13 12 11 38 38 H 1.08000 * 119.52652 * 359.94601 * 18 17 15 39 39 H 1.08007 * 120.05832 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.03050 * 359.95126 * 21 20 19 41 41 H 1.07997 * 119.07617 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.66530 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.36594 * 0.02562 * 26 17 15 44 44 H 1.08998 * 109.53233 * 186.67455 * 27 14 13 45 45 H 1.09002 * 109.67700 * 66.36323 * 27 14 13 46 46 H 1.09006 * 109.49801 * 298.56524 * 28 11 10 47 47 H 1.09004 * 109.50016 * 58.66355 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8251 -6.1413 -0.1270 13 6 0.8248 -7.3009 -0.1620 14 7 -0.0421 -7.2173 1.0214 15 6 -0.1818 -8.2741 1.8462 16 8 0.3521 -9.3317 1.5747 17 6 -0.9846 -8.1467 3.0816 18 6 -2.2842 -7.6141 3.0169 19 6 -3.0435 -7.4863 4.1360 20 6 -2.5303 -7.8904 5.3799 21 6 -3.2798 -7.7773 6.5628 22 7 -2.7637 -8.1668 7.7047 23 6 -1.5434 -8.6743 7.8052 24 6 -0.7362 -8.8260 6.7186 25 6 -1.2200 -8.4305 5.4572 26 6 -0.4521 -8.5585 4.2925 27 6 -0.7507 -5.9547 1.2868 28 6 0.2674 -4.8102 1.3056 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8906 33 1 0.3804 -4.7127 -0.8436 34 1 2.4906 -6.2607 0.7281 35 1 2.4109 -6.1382 -1.0462 36 1 0.2180 -7.2329 -1.0649 37 1 1.3633 -8.2486 -0.1543 38 1 -2.6844 -7.3016 2.0637 39 1 -4.0399 -7.0749 4.0697 40 1 -4.2795 -7.3698 6.5324 41 1 -1.1789 -8.9761 8.7760 42 1 0.2553 -9.2415 6.8226 43 1 0.5449 -8.9710 4.3384 44 1 -1.2517 -6.0142 2.2531 45 1 -1.4874 -5.7756 0.5036 46 1 0.9475 -4.9421 2.1472 47 1 -0.2561 -3.8593 1.4058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206812053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:00 Heat of formation + Delta-G solvation = 29.899404 kcal Electronic energy + Delta-G solvation = -28518.204866 eV Core-core repulsion = 24665.733630 eV Total energy + Delta-G solvation = -3852.471236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.33194 -40.23060 -37.97070 -37.23311 -35.00897 -33.40579 -33.02188 -31.95888 -30.78491 -30.34825 -30.02726 -26.98054 -25.27287 -24.28624 -23.59740 -23.24061 -22.63128 -21.84123 -20.53322 -19.50657 -18.52472 -17.66188 -17.14322 -16.99963 -16.56796 -15.93253 -15.35534 -15.25013 -14.84307 -14.54402 -14.50726 -14.25562 -14.08954 -13.95625 -13.81273 -13.64281 -13.23564 -13.13565 -12.88941 -12.77562 -12.49863 -12.30638 -12.20274 -11.84274 -11.49157 -11.20849 -11.03198 -10.86513 -10.62821 -10.46448 -10.38710 -10.34614 -10.12055 -10.01220 -9.81341 -9.68168 -9.34849 -8.89972 -8.74345 -8.45886 -6.94496 -5.79870 -3.07917 -0.09303 0.37497 1.50369 2.25765 2.65244 2.95231 3.41440 3.46920 3.48258 3.69459 4.03965 4.10350 4.16191 4.38906 4.43645 4.56190 4.64844 4.71944 4.78898 4.88957 4.96627 5.03179 5.10305 5.21175 5.29849 5.30209 5.31354 5.44628 5.51138 5.56826 5.59191 5.65277 5.72924 5.86403 5.87714 5.89910 5.93649 6.04671 6.13786 6.22768 6.23136 6.33021 6.37849 6.41736 6.57748 6.76251 6.87763 7.21368 7.60698 7.67679 7.92012 8.39587 9.50847 10.08536 10.43281 11.43116 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.002567 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.289150 B =10903.226893 C =12401.234653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.112 3.888 14 N -0.598 5.598 15 C 0.558 3.442 16 O -0.539 6.539 17 C -0.098 4.098 18 C -0.097 4.097 19 C -0.086 4.086 20 C -0.101 4.101 21 C 0.146 3.854 22 N -0.486 5.486 23 C 0.074 3.926 24 C -0.147 4.147 25 C -0.028 4.028 26 C -0.058 4.058 27 C 0.095 3.905 28 C -0.125 4.125 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -19.739 9.386 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.165 4.165 13 C -0.010 4.010 14 N -0.331 5.331 15 C 0.346 3.654 16 O -0.417 6.417 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.106 4.106 20 C -0.103 4.103 21 C -0.026 4.026 22 N -0.194 5.194 23 C -0.069 4.069 24 C -0.167 4.167 25 C -0.034 4.034 26 C -0.077 4.077 27 C -0.027 4.027 28 C -0.163 4.163 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.051 -20.153 10.082 23.333 hybrid contribution 0.733 1.053 -0.830 1.528 sum -5.319 -19.101 9.252 21.880 Atomic orbital electron populations 1.69649 1.05077 1.25637 1.57959 1.24722 0.95535 0.97654 1.03084 0.86198 0.78672 0.83860 0.77526 1.21732 1.21763 1.20799 1.19229 0.91036 0.84220 1.42476 0.91280 1.42368 1.05797 0.99974 1.89478 1.20665 0.93155 0.85366 0.97766 1.21315 0.97886 0.94431 0.97674 1.21919 0.97701 0.94013 1.02836 1.21677 0.92475 1.00195 0.86608 1.48165 1.46342 1.12744 1.25803 1.18322 0.80500 0.83706 0.82877 1.90787 1.48951 1.27367 1.74587 1.19960 0.95468 1.00936 0.93860 1.21019 0.92937 0.97819 0.99730 1.20911 1.00192 0.98669 0.90826 1.19143 0.94663 1.00667 0.95877 1.23278 0.99167 0.93700 0.86420 1.67399 1.13601 1.09929 1.28429 1.22203 0.89548 0.96171 0.98960 1.21982 1.01516 1.00913 0.92251 1.18090 0.93539 0.97715 0.94019 1.21254 0.99795 0.96571 0.90035 1.22257 0.95215 0.82902 1.02312 1.21927 0.97967 0.98140 0.98247 0.93535 0.78286 0.96449 0.96344 0.90887 0.91570 0.90437 0.91192 0.89151 0.84567 0.84070 0.81683 0.82822 0.84171 0.84265 0.89196 0.90712 0.91785 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.87 5.32 -59.91 -0.32 -18.19 16 10 C 0.16 3.05 5.65 -4.04 -0.02 3.03 16 11 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 12 C -0.13 -1.56 5.36 -26.61 -0.14 -1.70 16 13 C 0.11 1.31 6.41 -3.71 -0.02 1.28 16 14 N -0.60 -7.17 2.98 -173.64 -0.52 -7.69 16 15 C 0.56 7.29 7.22 -12.31 -0.09 7.20 16 16 O -0.54 -8.64 16.46 5.32 0.09 -8.55 16 17 C -0.10 -1.08 5.02 -104.95 -0.53 -1.61 16 18 C -0.10 -0.87 7.25 -39.55 -0.29 -1.15 16 19 C -0.09 -0.68 9.77 -39.59 -0.39 -1.06 16 20 C -0.10 -0.94 5.75 -106.78 -0.61 -1.55 16 21 C 0.15 1.26 11.04 -16.97 -0.19 1.07 16 22 N -0.49 -4.88 10.29 -13.15 -0.14 -5.02 16 23 C 0.07 0.64 11.07 -17.97 -0.20 0.44 16 24 C -0.15 -1.25 9.88 -39.35 -0.39 -1.64 16 25 C -0.03 -0.28 5.74 -106.83 -0.61 -0.90 16 26 C -0.06 -0.61 9.51 -38.78 -0.37 -0.98 16 27 C 0.10 1.06 5.36 -3.56 -0.02 1.04 16 28 C -0.12 -1.75 5.25 -26.61 -0.14 -1.89 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.38 9.68 6.84 -40.82 -0.28 9.40 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.10 7.03 -51.93 -0.36 0.73 16 38 H 0.14 1.02 7.02 -52.49 -0.37 0.65 16 39 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.09 0.91 4.55 -51.93 -0.24 0.67 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -33.68 381.08 -10.56 -44.24 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.66 Total: 6.43 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -4.45 Total: -7.23 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.25 Total: -57.78 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.68 -10.56 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206812053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.136 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds