Wall clock time and date at job start Sat Apr 11 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99674 * 2 1 4 4 H 1.48494 * 109.47289 * 269.99874 * 3 2 1 5 5 H 1.48501 * 109.47149 * 30.00459 * 3 2 1 6 6 H 1.48509 * 109.46649 * 150.00172 * 3 2 1 7 7 C 1.38807 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00554 * 359.97438 * 7 2 1 9 9 N 1.36949 * 119.99676 * 179.97438 * 7 2 1 10 10 C 1.46494 * 119.99697 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46790 * 179.97438 * 10 9 7 12 12 C 1.53046 * 109.46152 * 184.99777 * 11 10 9 13 13 C 1.53191 * 109.31465 * 178.61275 * 12 11 10 14 14 N 1.46929 * 108.77177 * 54.64027 * 13 12 11 15 15 C 1.34771 * 120.63041 * 126.37178 * 14 13 12 16 16 O 1.21600 * 120.00067 * 4.20432 * 15 14 13 17 17 C 1.47457 * 120.00107 * 184.20830 * 15 14 13 18 18 C 1.38861 * 120.45650 * 305.41492 * 17 15 14 19 19 C 1.38894 * 120.67452 * 180.25751 * 18 17 15 20 20 C 1.36374 * 121.27406 * 359.48304 * 19 18 17 21 21 C 1.40397 * 119.98242 * 0.25224 * 20 19 18 22 22 C 1.40468 * 121.95174 * 180.02562 * 21 20 19 23 23 N 1.31282 * 119.88313 * 179.97438 * 22 21 20 24 24 C 1.32551 * 122.73299 * 0.02562 * 23 22 21 25 25 C 1.36337 * 121.81889 * 359.97438 * 24 23 22 26 26 C 1.40294 * 118.70208 * 0.02562 * 25 24 23 27 27 C 1.46924 * 118.73835 * 306.63971 * 14 13 12 28 28 C 1.52765 * 109.00872 * 53.31022 * 27 14 13 29 29 H 0.97001 * 120.00423 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99834 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47365 * 60.00312 * 10 9 7 32 32 H 1.09003 * 109.47346 * 299.99783 * 10 9 7 33 33 H 1.08995 * 109.45141 * 304.96705 * 11 10 9 34 34 H 1.09006 * 109.49498 * 58.66414 * 12 11 10 35 35 H 1.09003 * 109.50020 * 298.56977 * 12 11 10 36 36 H 1.08994 * 109.58558 * 294.84980 * 13 12 11 37 37 H 1.09002 * 109.70007 * 174.49288 * 13 12 11 38 38 H 1.08003 * 119.66488 * 359.97438 * 18 17 15 39 39 H 1.08010 * 119.36574 * 179.75830 * 19 18 17 40 40 H 1.08003 * 120.00758 * 180.23354 * 20 19 18 41 41 H 1.08001 * 120.06110 * 359.95764 * 22 21 20 42 42 H 1.07993 * 119.09092 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.64915 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.58970 * 173.15074 * 27 14 13 45 45 H 1.09008 * 109.58725 * 293.57626 * 27 14 13 46 46 H 1.09002 * 109.56223 * 185.55469 * 28 27 14 47 47 H 1.08997 * 109.35345 * 65.49870 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 6 6.3803 -3.5113 -0.1281 13 6 7.8847 -3.2248 -0.1639 14 7 8.2431 -2.4306 1.0192 15 6 9.2279 -2.8354 1.8454 16 8 9.8803 -3.8251 1.5746 17 6 9.5142 -2.0782 3.0779 18 6 9.7807 -0.7165 3.0215 19 6 10.0562 0.0001 4.1789 20 6 10.0633 -0.6047 5.4012 21 6 9.7939 -1.9786 5.5058 22 6 9.7899 -2.6432 6.7433 23 7 9.5322 -3.9295 6.7941 24 6 9.2698 -4.6511 5.7136 25 6 9.2500 -4.0984 4.4675 26 6 9.5163 -2.7275 4.3341 27 6 7.5034 -1.1899 1.2877 28 6 6.0069 -1.4964 1.3041 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3620 -0.0014 31 1 3.8485 -3.0425 -0.8908 32 1 3.8492 -3.0422 0.8892 33 1 5.8649 -1.5461 -0.8451 34 1 6.0843 -4.0168 -1.0473 35 1 6.1513 -4.1471 0.7272 36 1 8.1287 -2.6655 -1.0671 37 1 8.4380 -4.1639 -0.1549 38 1 9.7783 -0.2104 2.0674 39 1 10.2644 1.0577 4.1102 40 1 10.2765 -0.0269 6.2885 41 1 9.9988 -2.0972 7.6514 42 1 9.0652 -5.7058 5.8235 43 1 9.0335 -4.7041 3.5999 44 1 7.8033 -0.7877 2.2554 45 1 7.7157 -0.4612 0.5052 46 1 5.4452 -0.5676 1.4042 47 1 5.7815 -2.1511 2.1459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206929802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:23 Heat of formation + Delta-G solvation = 34.840484 kcal Electronic energy + Delta-G solvation = -29114.776976 eV Core-core repulsion = 25262.520002 eV Total energy + Delta-G solvation = -3852.256975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.49406 -40.11377 -37.98984 -37.48228 -35.18629 -33.49374 -32.91892 -31.81328 -31.17343 -30.76176 -30.00932 -27.19594 -25.03040 -24.27121 -23.96056 -23.31101 -22.98553 -21.47169 -20.51844 -19.41837 -18.58826 -17.81972 -17.53652 -17.07478 -16.77300 -16.07814 -15.43641 -15.16523 -14.77678 -14.69373 -14.52544 -14.43074 -14.19891 -14.09539 -13.97230 -13.56046 -13.26709 -13.13642 -13.02117 -12.60330 -12.48580 -12.37295 -12.26081 -11.99214 -11.80824 -11.45614 -11.29372 -10.96111 -10.61458 -10.58879 -10.50383 -10.32507 -10.17476 -10.06749 -9.79076 -9.61746 -9.44810 -8.93605 -8.85040 -8.42939 -7.26344 -5.79959 -3.15557 -0.18222 0.49756 1.37102 2.30521 2.57084 2.83930 3.30835 3.34135 3.40725 3.70285 3.97187 4.10713 4.25197 4.32933 4.45707 4.53234 4.54792 4.67522 4.69095 4.78471 4.89441 4.94229 5.01381 5.13250 5.17389 5.28681 5.32759 5.39411 5.41861 5.50983 5.52475 5.59803 5.62683 5.66934 5.75484 5.83635 5.84025 5.93623 5.99787 6.06103 6.17898 6.24030 6.29024 6.35196 6.40483 6.64344 6.75055 7.11533 7.63760 7.84299 7.96594 8.39089 9.18055 9.90161 10.10016 11.38661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.002916 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.961939 B = 9600.339410 C =10177.155738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.163 3.837 11 C -0.098 4.098 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.598 5.598 15 C 0.563 3.437 16 O -0.535 6.535 17 C -0.117 4.117 18 C -0.063 4.063 19 C -0.126 4.126 20 C -0.065 4.065 21 C -0.117 4.117 22 C 0.147 3.853 23 N -0.486 5.486 24 C 0.081 3.919 25 C -0.147 4.147 26 C 0.010 3.990 27 C 0.096 3.904 28 C -0.128 4.128 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.143 0.857 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.697 -1.941 8.984 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.036 3.964 11 C -0.117 4.117 12 C -0.164 4.164 13 C -0.009 4.009 14 N -0.330 5.330 15 C 0.351 3.649 16 O -0.413 6.413 17 C -0.120 4.120 18 C -0.083 4.083 19 C -0.144 4.144 20 C -0.085 4.085 21 C -0.119 4.119 22 C -0.025 4.025 23 N -0.194 5.194 24 C -0.062 4.062 25 C -0.166 4.166 26 C 0.004 3.996 27 C -0.027 4.027 28 C -0.166 4.166 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.183 0.817 42 H 0.173 0.827 43 H 0.160 0.840 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.747 -3.137 9.550 26.711 hybrid contribution 0.350 1.794 -0.915 2.044 sum 25.097 -1.343 8.635 26.575 Atomic orbital electron populations 1.69701 1.05114 1.25816 1.57625 1.24682 0.95241 0.97197 1.02127 0.86543 0.79118 0.85046 0.77740 1.21094 1.21715 1.20416 1.19069 0.80684 0.94733 1.42876 0.89275 1.42719 1.04009 1.02190 1.91186 1.20642 0.87896 0.89260 0.98647 1.21372 0.96665 0.96186 0.97484 1.21911 0.93442 0.97958 1.03124 1.21695 0.96100 0.96623 0.86510 1.48096 1.34287 1.24815 1.25844 1.18096 0.80102 0.84114 0.82594 1.90800 1.49216 1.26705 1.74590 1.19822 1.05029 0.94318 0.92809 1.21483 0.95023 0.92171 0.99577 1.20856 1.00760 1.00766 0.91982 1.21164 0.95948 0.92791 0.98567 1.18990 1.03393 0.95141 0.94340 1.23249 0.93070 0.90281 0.95912 1.67444 1.11166 1.07762 1.33037 1.22264 0.96101 1.00240 0.87557 1.22022 1.00335 0.94337 0.99917 1.17821 0.96364 0.93731 0.91655 1.22038 0.92850 0.85486 1.02290 1.21879 0.93652 1.02420 0.98632 0.93045 0.80732 0.95413 0.95604 0.90930 0.90186 0.91352 0.91176 0.88956 0.84706 0.84638 0.84355 0.81685 0.82672 0.83964 0.89374 0.90877 0.89818 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.54 27.73 -169.99 -4.71 16.83 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 7 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.76 -17.32 5.12 -59.91 -0.31 -17.63 16 10 C 0.16 3.00 5.65 -4.04 -0.02 2.97 16 11 C -0.10 -1.36 2.19 -90.58 -0.20 -1.56 16 12 C -0.13 -1.45 5.36 -26.61 -0.14 -1.60 16 13 C 0.11 1.23 6.42 -3.71 -0.02 1.20 16 14 N -0.60 -6.82 2.98 -174.28 -0.52 -7.34 16 15 C 0.56 7.16 6.50 -12.51 -0.08 7.08 16 16 O -0.54 -8.27 15.29 5.28 0.08 -8.19 16 17 C -0.12 -1.30 4.89 -104.70 -0.51 -1.82 16 18 C -0.06 -0.53 7.43 -39.11 -0.29 -0.82 16 19 C -0.13 -0.85 9.92 -40.01 -0.40 -1.25 16 20 C -0.06 -0.45 9.79 -39.44 -0.39 -0.83 16 21 C -0.12 -1.11 5.74 -106.88 -0.61 -1.72 16 22 C 0.15 1.32 11.05 -16.95 -0.19 1.13 16 23 N -0.49 -5.38 10.30 -13.11 -0.14 -5.52 16 24 C 0.08 0.87 11.07 -17.93 -0.20 0.67 16 25 C -0.15 -1.71 9.30 -39.49 -0.37 -2.08 16 26 C 0.01 0.12 5.77 -106.55 -0.61 -0.50 16 27 C 0.10 1.00 5.52 -3.93 -0.02 0.98 16 28 C -0.13 -1.68 5.23 -26.83 -0.14 -1.82 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.36 7.92 4.70 -40.82 -0.19 7.73 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.06 7.03 -51.93 -0.36 0.69 16 38 H 0.14 0.92 7.40 -52.48 -0.39 0.53 16 39 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 41 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.14 1.73 6.61 -52.49 -0.35 1.38 16 44 H 0.09 0.84 4.77 -51.93 -0.25 0.60 16 45 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 46 H 0.08 1.23 7.15 -51.93 -0.37 0.86 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -34.82 375.31 -10.19 -45.01 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.58 Total: 6.53 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -4.45 Total: -6.93 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.19 Total: -58.91 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.82 -10.19 -45.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206929802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.855 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds