Wall clock time and date at job start Sat Apr 11 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34636 * 116.99903 * 2 1 4 4 O 1.21509 * 120.00069 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99673 * 179.97438 * 3 2 1 6 6 C 1.46965 * 120.59416 * 179.97438 * 5 3 2 7 7 C 1.53359 * 108.63723 * 235.24892 * 6 5 3 8 8 N 1.46964 * 108.63618 * 310.57585 * 7 6 5 9 9 C 1.34779 * 120.59399 * 235.20378 * 8 7 6 10 10 O 1.21347 * 120.00115 * 4.94237 * 9 8 7 11 11 C 1.49452 * 119.99686 * 184.94056 * 9 8 7 12 12 O 1.21353 * 120.00047 * 85.45149 * 11 9 8 13 13 N 1.34772 * 120.00024 * 265.71751 * 11 9 8 14 14 C 1.46508 * 120.00093 * 184.73377 * 13 11 9 15 15 C 1.53002 * 109.47075 * 175.03907 * 14 13 11 16 16 C 1.50699 * 115.55031 * 65.12481 * 15 14 13 17 17 H 1.07995 * 120.00217 * 273.85682 * 16 15 14 18 18 C 1.37878 * 119.99862 * 93.86127 * 16 15 14 19 19 N 1.31513 * 119.99836 * 4.66076 * 18 16 15 20 20 Si 1.86798 * 119.99988 * 184.66218 * 18 16 15 21 21 H 1.48496 * 109.47153 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46800 * 120.00001 * 20 18 16 23 23 H 1.48498 * 109.47380 * 239.99736 * 20 18 16 24 24 C 1.53001 * 117.49679 * 279.45538 * 15 14 13 25 25 C 1.52995 * 117.49466 * 210.79645 * 15 14 13 26 26 C 1.46960 * 118.81070 * 55.47892 * 8 7 6 27 27 C 1.46964 * 120.59591 * 0.02562 * 5 3 2 28 28 H 1.09005 * 109.46865 * 60.00189 * 1 2 3 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47268 * 300.00333 * 1 2 3 31 31 H 1.09001 * 109.60559 * 115.49926 * 6 5 3 32 32 H 1.09001 * 109.75023 * 355.07947 * 6 5 3 33 33 H 1.09008 * 109.61132 * 190.83043 * 7 6 5 34 34 H 1.08998 * 109.75305 * 70.40409 * 7 6 5 35 35 H 0.96999 * 120.00117 * 4.73688 * 13 11 9 36 36 H 1.09001 * 109.46632 * 295.03811 * 14 13 11 37 37 H 1.08997 * 109.47045 * 55.03495 * 14 13 11 38 38 H 0.96998 * 120.00021 * 185.00124 * 19 18 16 39 39 H 1.08997 * 117.49819 * 359.97438 * 24 15 14 40 40 H 1.09001 * 117.49668 * 145.02090 * 24 15 14 41 41 H 1.08997 * 117.49825 * 214.97621 * 25 15 14 42 42 H 1.08997 * 117.50269 * 359.97438 * 25 15 14 43 43 H 1.09005 * 109.61251 * 64.26811 * 26 8 7 44 44 H 1.09006 * 109.61025 * 184.77530 * 26 8 7 45 45 H 1.09002 * 109.61072 * 244.49765 * 27 5 3 46 46 H 1.09004 * 109.61072 * 4.83607 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0900 2.5726 0.0000 7 6 5.0516 2.6224 -1.1936 8 7 5.8648 1.3982 -1.1931 9 6 7.2107 1.4688 -1.1934 10 8 7.7619 2.5461 -1.1037 11 6 8.0243 0.2200 -1.3043 12 8 8.2798 -0.2428 -2.3967 13 7 8.4698 -0.3951 -0.1910 14 6 9.3531 -1.5588 -0.3006 15 6 9.8083 -1.9869 1.0960 16 6 8.7201 -2.4925 2.0078 17 1 8.1461 -1.7965 2.6012 18 6 8.4576 -3.8439 2.0844 19 7 9.2154 -4.6989 1.4330 20 14 7.0254 -4.4603 3.1132 21 1 6.3337 -3.3058 3.7407 22 1 6.0717 -5.1953 2.2439 23 1 7.5319 -5.3698 4.1721 24 6 10.9586 -1.2058 1.7344 25 6 11.1910 -2.6294 1.2222 26 6 5.1840 0.0958 -1.1982 27 6 4.2224 0.0459 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.6508 2.6925 0.9269 32 1 3.3548 3.3724 -0.0889 33 1 5.7013 3.4932 -1.1040 34 1 4.4837 2.6839 -2.1219 35 1 8.2057 -0.0673 0.6829 36 1 8.8152 -2.3797 -0.7749 37 1 10.2236 -1.2988 -0.9027 38 1 8.9883 -5.6420 1.4275 39 1 11.3913 -0.3872 1.1593 40 1 10.9285 -1.0580 2.8139 41 1 11.3139 -3.4176 1.9650 42 1 11.7763 -2.7476 0.3103 43 1 4.6229 -0.0201 -2.1256 44 1 5.9211 -0.7026 -1.1116 45 1 4.7927 -0.0144 0.9275 46 1 3.5725 -0.8249 -0.0865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261227262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:45 Heat of formation + Delta-G solvation = -104.652915 kcal Electronic energy + Delta-G solvation = -30517.937741 eV Core-core repulsion = 26216.489864 eV Total energy + Delta-G solvation = -4301.447877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 7.09 seconds Orbital eigenvalues (eV) -41.12175 -40.40829 -38.69864 -37.68704 -36.75762 -36.48797 -34.40561 -33.65812 -32.03131 -31.88061 -28.91665 -27.70845 -26.86085 -25.56973 -24.49336 -23.76474 -22.37279 -21.18335 -20.68310 -19.78002 -19.36192 -18.48110 -17.47132 -17.30948 -16.82262 -16.65801 -16.38685 -15.95265 -15.24497 -15.23738 -14.93186 -14.81603 -14.73106 -14.35090 -14.24843 -13.94271 -13.49849 -13.35465 -13.07518 -12.80915 -12.80317 -12.41847 -12.08109 -11.92462 -11.85613 -11.72000 -11.66208 -11.29080 -11.11973 -11.05161 -11.01225 -10.77049 -10.61000 -10.26316 -9.68419 -9.65889 -9.35187 -9.22864 -8.73691 -8.64737 -8.46063 -8.25379 -6.18062 -4.28780 1.76192 2.17260 2.32121 2.52622 2.79188 3.16431 3.26995 3.27489 3.51842 3.59761 4.25655 4.41973 4.46576 4.68745 4.81062 4.84238 4.90460 4.93566 4.98691 5.07910 5.11656 5.23608 5.31013 5.35143 5.39594 5.48806 5.64372 5.88816 5.90519 6.02401 6.08295 6.24574 6.33358 6.41726 6.56643 6.70588 6.86192 6.92122 6.99453 7.07182 7.25327 7.53399 7.69723 7.71945 7.82528 7.95230 8.22343 8.31800 8.73733 9.39079 10.88490 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.003846 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.550684 B = 7278.716924 C = 9352.515549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.652 3.348 4 O -0.574 6.574 5 N -0.594 5.594 6 C 0.115 3.885 7 C 0.096 3.904 8 N -0.601 5.601 9 C 0.520 3.480 10 O -0.514 6.514 11 C 0.505 3.495 12 O -0.526 6.526 13 N -0.681 5.681 14 C 0.159 3.841 15 C 0.014 3.986 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.075 3.925 19 N -0.873 5.873 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 C -0.213 4.213 25 C -0.131 4.131 26 C 0.092 3.908 27 C 0.097 3.903 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.319 8.556 -2.673 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.407 3.593 4 O -0.463 6.463 5 N -0.335 5.335 6 C -0.007 4.007 7 C -0.027 4.027 8 N -0.337 5.337 9 C 0.303 3.697 10 O -0.387 6.387 11 C 0.284 3.716 12 O -0.402 6.402 13 N -0.331 5.331 14 C 0.037 3.963 15 C 0.014 3.986 16 C -0.536 4.536 17 H 0.078 0.922 18 C -0.129 4.129 19 N -0.509 5.509 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.210 1.210 24 C -0.250 4.250 25 C -0.169 4.169 26 C -0.031 4.031 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.242 0.758 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.106 0.894 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.002 8.860 -3.387 16.094 hybrid contribution -1.007 -0.412 0.865 1.390 sum -14.008 8.447 -2.522 16.552 Atomic orbital electron populations 1.23215 0.74279 1.03611 1.02666 1.86252 1.24235 1.30798 1.86898 1.18002 0.83005 0.82235 0.76088 1.90986 1.64131 1.34964 1.56232 1.46842 1.02023 1.08538 1.76082 1.22078 0.95433 0.84218 0.99015 1.22106 0.93468 0.88543 0.98550 1.48078 1.04944 1.07806 1.72891 1.20735 0.82319 0.90600 0.76022 1.90769 1.70751 1.29041 1.48174 1.19916 0.81868 0.83780 0.86022 1.90800 1.58959 1.63758 1.26717 1.46113 1.48393 1.30728 1.07844 1.21246 0.91384 0.85225 0.98455 1.19060 0.89069 0.98905 0.91594 1.20362 1.17289 0.91627 1.24371 0.92164 1.24977 0.95872 0.96785 0.95307 1.70017 1.36026 1.02795 1.42056 0.86626 0.82593 0.79035 0.80287 1.19669 1.20836 1.21025 1.23089 1.07494 0.94788 0.99666 1.22456 0.99413 0.93907 1.01136 1.22333 0.96695 0.85024 0.99097 1.22292 0.94129 0.87007 0.99233 0.91861 0.87847 0.91849 0.89907 0.87161 0.87038 0.90379 0.75847 0.90980 0.93474 0.92843 0.91738 0.90291 0.88745 0.91900 0.89935 0.87618 0.89439 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -3.88 9.20 -40.31 -0.37 -4.25 16 3 C 0.65 7.80 8.43 54.05 0.46 8.25 16 4 O -0.57 -8.15 15.54 -19.28 -0.30 -8.45 16 5 N -0.59 -6.24 2.95 -178.04 -0.52 -6.76 16 6 C 0.11 1.07 6.59 -3.60 -0.02 1.04 16 7 C 0.10 0.95 6.60 -3.60 -0.02 0.93 16 8 N -0.60 -7.29 2.94 -172.75 -0.51 -7.80 16 9 C 0.52 8.09 7.54 -11.58 -0.09 8.00 16 10 O -0.51 -9.10 16.51 5.50 0.09 -9.01 16 11 C 0.50 8.89 5.61 -11.59 -0.06 8.82 16 12 O -0.53 -10.80 17.11 5.49 0.09 -10.71 16 13 N -0.68 -11.95 5.48 -60.72 -0.33 -12.28 16 14 C 0.16 3.24 5.51 -4.04 -0.02 3.22 16 15 C 0.01 0.32 1.64 -155.66 -0.25 0.06 16 16 C -0.50 -11.80 8.64 -34.44 -0.30 -12.10 16 17 H 0.06 1.40 7.82 -52.49 -0.41 0.99 16 18 C 0.07 1.84 5.41 -17.82 -0.10 1.74 16 19 N -0.87 -22.57 11.87 55.43 0.66 -21.91 16 20 Si 0.89 19.04 29.54 -169.99 -5.02 14.01 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.21 -4.28 9.96 -26.69 -0.27 -4.54 16 25 C -0.13 -2.87 8.85 -26.70 -0.24 -3.11 16 26 C 0.09 0.99 6.52 -3.39 -0.02 0.97 16 27 C 0.10 0.95 6.62 -3.39 -0.02 0.93 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.01 7.00 -51.93 -0.36 0.65 16 33 H 0.11 1.12 6.99 -51.92 -0.36 0.76 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 6.64 8.32 -40.82 -0.34 6.30 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.26 6.52 8.32 -40.82 -0.34 6.18 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.09 2.27 7.60 -51.93 -0.39 1.87 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.11 1.29 6.34 -51.93 -0.33 0.96 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.11 1.00 6.91 -51.93 -0.36 0.64 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -30.91 387.86 -7.03 -37.93 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.76 Total: 7.66 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 0.11 Total: 15.70 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.71 Total: -48.75 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.49 Total: -32.41 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.91 -7.03 -37.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.718 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.09 seconds