Wall clock time and date at job start Sat Apr 11 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34636 * 116.99903 * 2 1 4 4 O 1.21509 * 120.00069 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99673 * 179.97438 * 3 2 1 6 6 C 1.46965 * 120.59416 * 179.97438 * 5 3 2 7 7 C 1.53359 * 108.63723 * 235.24892 * 6 5 3 8 8 N 1.46964 * 108.63618 * 310.57585 * 7 6 5 9 9 C 1.34779 * 120.59399 * 235.20378 * 8 7 6 10 10 O 1.21347 * 120.00115 * 4.94237 * 9 8 7 11 11 C 1.49452 * 119.99686 * 184.94056 * 9 8 7 12 12 O 1.21353 * 120.00047 * 85.45149 * 11 9 8 13 13 N 1.34772 * 120.00024 * 265.71751 * 11 9 8 14 14 C 1.46508 * 120.00093 * 184.73377 * 13 11 9 15 15 C 1.53002 * 109.47075 * 175.03907 * 14 13 11 16 16 C 1.50699 * 115.55031 * 65.12481 * 15 14 13 17 17 H 1.07995 * 120.00217 * 273.85682 * 16 15 14 18 18 C 1.37878 * 119.99862 * 93.86127 * 16 15 14 19 19 N 1.31513 * 119.99836 * 4.66076 * 18 16 15 20 20 Si 1.86798 * 119.99988 * 184.66218 * 18 16 15 21 21 H 1.48496 * 109.47153 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46800 * 120.00001 * 20 18 16 23 23 H 1.48498 * 109.47380 * 239.99736 * 20 18 16 24 24 C 1.53001 * 117.49679 * 279.45538 * 15 14 13 25 25 C 1.52995 * 117.49466 * 210.79645 * 15 14 13 26 26 C 1.46960 * 118.81070 * 55.47892 * 8 7 6 27 27 C 1.46964 * 120.59591 * 0.02562 * 5 3 2 28 28 H 1.09005 * 109.46865 * 60.00189 * 1 2 3 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47268 * 300.00333 * 1 2 3 31 31 H 1.09001 * 109.60559 * 115.49926 * 6 5 3 32 32 H 1.09001 * 109.75023 * 355.07947 * 6 5 3 33 33 H 1.09008 * 109.61132 * 190.83043 * 7 6 5 34 34 H 1.08998 * 109.75305 * 70.40409 * 7 6 5 35 35 H 0.96999 * 120.00117 * 4.73688 * 13 11 9 36 36 H 1.09001 * 109.46632 * 295.03811 * 14 13 11 37 37 H 1.08997 * 109.47045 * 55.03495 * 14 13 11 38 38 H 0.96998 * 120.00021 * 185.00124 * 19 18 16 39 39 H 1.08997 * 117.49819 * 359.97438 * 24 15 14 40 40 H 1.09001 * 117.49668 * 145.02090 * 24 15 14 41 41 H 1.08997 * 117.49825 * 214.97621 * 25 15 14 42 42 H 1.08997 * 117.50269 * 359.97438 * 25 15 14 43 43 H 1.09005 * 109.61251 * 64.26811 * 26 8 7 44 44 H 1.09006 * 109.61025 * 184.77530 * 26 8 7 45 45 H 1.09002 * 109.61072 * 244.49765 * 27 5 3 46 46 H 1.09004 * 109.61072 * 4.83607 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0900 2.5726 0.0000 7 6 5.0516 2.6224 -1.1936 8 7 5.8648 1.3982 -1.1931 9 6 7.2107 1.4688 -1.1934 10 8 7.7619 2.5461 -1.1037 11 6 8.0243 0.2200 -1.3043 12 8 8.2798 -0.2428 -2.3967 13 7 8.4698 -0.3951 -0.1910 14 6 9.3531 -1.5588 -0.3006 15 6 9.8083 -1.9869 1.0960 16 6 8.7201 -2.4925 2.0078 17 1 8.1461 -1.7965 2.6012 18 6 8.4576 -3.8439 2.0844 19 7 9.2154 -4.6989 1.4330 20 14 7.0254 -4.4603 3.1132 21 1 6.3337 -3.3058 3.7407 22 1 6.0717 -5.1953 2.2439 23 1 7.5319 -5.3698 4.1721 24 6 10.9586 -1.2058 1.7344 25 6 11.1910 -2.6294 1.2222 26 6 5.1840 0.0958 -1.1982 27 6 4.2224 0.0459 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.6508 2.6925 0.9269 32 1 3.3548 3.3724 -0.0889 33 1 5.7013 3.4932 -1.1040 34 1 4.4837 2.6839 -2.1219 35 1 8.2057 -0.0673 0.6829 36 1 8.8152 -2.3797 -0.7749 37 1 10.2236 -1.2988 -0.9027 38 1 8.9883 -5.6420 1.4275 39 1 11.3913 -0.3872 1.1593 40 1 10.9285 -1.0580 2.8139 41 1 11.3139 -3.4176 1.9650 42 1 11.7763 -2.7476 0.3103 43 1 4.6229 -0.0201 -2.1256 44 1 5.9211 -0.7026 -1.1116 45 1 4.7927 -0.0144 0.9275 46 1 3.5725 -0.8249 -0.0865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261227262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:41 Heat of formation + Delta-G solvation = -125.476542 kcal Electronic energy + Delta-G solvation = -30518.840721 eV Core-core repulsion = 26216.489864 eV Total energy + Delta-G solvation = -4302.350857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -42.16004 -41.49816 -39.98040 -38.77140 -38.40351 -37.39762 -35.40131 -35.21320 -33.87209 -32.72828 -29.86620 -28.84476 -27.99371 -27.30147 -25.52768 -24.81324 -23.42595 -22.84188 -21.73160 -21.34217 -20.51944 -19.71034 -18.45739 -18.36801 -18.02283 -17.74883 -17.63377 -17.37139 -16.65422 -16.32828 -16.15356 -16.04064 -15.86236 -15.55165 -15.37098 -15.02864 -14.88416 -14.55920 -14.44040 -13.96967 -13.78841 -13.64885 -13.41244 -13.07031 -12.93603 -12.86925 -12.78807 -12.73828 -12.55165 -12.48261 -12.28618 -11.97905 -11.80491 -11.69132 -11.35863 -10.99042 -10.80715 -10.63125 -10.38695 -10.14030 -9.95270 -9.66245 -8.04807 -6.19346 0.88391 0.92749 1.14837 1.45793 1.47160 1.52025 1.59603 1.62688 2.33718 2.47737 2.78802 3.22369 3.26298 3.57663 3.60764 3.72758 3.97023 4.04421 4.16343 4.22473 4.32248 4.36491 4.38331 4.52548 4.55600 4.57511 4.64030 4.71074 4.72778 4.73345 4.84819 4.91847 5.05767 5.06780 5.20524 5.21468 5.33777 5.33986 5.56855 5.76104 5.79402 5.81648 6.11286 6.34992 6.40116 6.53946 6.87446 6.90503 7.08846 7.50813 9.01600 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.003846 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.550684 B = 7278.716924 C = 9352.515549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.373 6.373 3 C 0.650 3.350 4 O -0.600 6.600 5 N -0.592 5.592 6 C 0.118 3.882 7 C 0.099 3.901 8 N -0.589 5.589 9 C 0.527 3.473 10 O -0.537 6.537 11 C 0.509 3.491 12 O -0.557 6.557 13 N -0.672 5.672 14 C 0.174 3.826 15 C 0.000 4.000 16 C -0.501 4.501 17 H 0.065 0.935 18 C 0.030 3.970 19 N -0.905 5.905 20 Si 0.944 3.056 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.293 1.293 24 C -0.188 4.188 25 C -0.142 4.142 26 C 0.092 3.908 27 C 0.102 3.898 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.414 0.586 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.259 0.741 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.853 9.429 -2.186 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.286 6.286 3 C 0.405 3.595 4 O -0.492 6.492 5 N -0.333 5.333 6 C -0.003 4.003 7 C -0.023 4.023 8 N -0.324 5.324 9 C 0.309 3.691 10 O -0.414 6.414 11 C 0.290 3.710 12 O -0.436 6.436 13 N -0.323 5.323 14 C 0.051 3.949 15 C 0.000 4.000 16 C -0.538 4.538 17 H 0.083 0.917 18 C -0.171 4.171 19 N -0.542 5.542 20 Si 0.770 3.230 21 H -0.183 1.183 22 H -0.208 1.208 23 H -0.220 1.220 24 C -0.225 4.225 25 C -0.180 4.180 26 C -0.031 4.031 27 C -0.021 4.021 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.579 9.741 -2.878 17.769 hybrid contribution -0.567 -0.695 0.704 1.141 sum -15.146 9.046 -2.174 17.776 Atomic orbital electron populations 1.23495 0.72710 1.05533 1.02627 1.86257 1.25810 1.29982 1.86581 1.18151 0.83266 0.82306 0.75775 1.90967 1.64758 1.35904 1.57538 1.46922 1.01769 1.09036 1.75523 1.22103 0.95247 0.83997 0.98977 1.22266 0.93201 0.87336 0.99530 1.48112 1.03925 1.09306 1.71021 1.20207 0.83236 0.89097 0.76514 1.90767 1.71431 1.29217 1.49942 1.20270 0.81426 0.84075 0.85264 1.90782 1.60061 1.64916 1.27833 1.45934 1.47938 1.29978 1.08428 1.20864 0.91361 0.85420 0.97305 1.19121 0.88938 0.99807 0.92180 1.20645 1.17376 0.91692 1.24131 0.91659 1.25626 0.97931 0.97177 0.96366 1.70137 1.37492 1.02796 1.43824 0.85726 0.80071 0.78548 0.78605 1.18338 1.20789 1.21991 1.23060 1.05460 0.94069 0.99928 1.22348 1.00130 0.94513 1.01056 1.22431 0.96459 0.83838 1.00407 1.22279 0.93895 0.87241 0.98645 0.91826 0.84977 0.92021 0.89184 0.86706 0.86899 0.89058 0.74919 0.93378 0.93648 0.93219 0.89825 0.90030 0.91251 0.91253 0.88516 0.88963 0.89273 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.56 113.37 1.20 1.84 16 2 O -0.37 -7.08 9.20 -55.45 -0.51 -7.59 16 3 C 0.65 14.34 8.43 129.79 1.09 15.44 16 4 O -0.60 -16.18 15.54 19.81 0.31 -15.87 16 5 N -0.59 -11.14 2.95 -947.60 -2.79 -13.93 16 6 C 0.12 1.95 6.59 86.41 0.57 2.52 16 7 C 0.10 1.73 6.60 86.41 0.57 2.30 16 8 N -0.59 -13.24 2.94 -818.83 -2.41 -15.64 16 9 C 0.53 15.73 7.54 87.27 0.66 16.39 16 10 O -0.54 -18.36 16.51 -3.24 -0.05 -18.42 16 11 C 0.51 17.58 5.61 87.27 0.49 18.07 16 12 O -0.56 -22.82 17.11 -3.26 -0.06 -22.87 16 13 N -0.67 -23.06 5.48 -464.39 -2.54 -25.61 16 14 C 0.17 7.05 5.51 86.38 0.48 7.52 16 15 C 0.00 0.01 1.64 -52.93 -0.09 -0.07 16 16 C -0.50 -23.30 8.64 25.60 0.22 -23.08 16 17 H 0.07 2.92 7.82 -2.91 -0.02 2.89 16 18 C 0.03 1.46 5.41 84.66 0.46 1.92 16 19 N -0.90 -47.33 11.87 21.45 0.25 -47.07 16 20 Si 0.94 38.61 29.54 68.60 2.03 40.63 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 24 C -0.19 -7.27 9.96 30.62 0.30 -6.97 16 25 C -0.14 -6.24 8.85 30.62 0.27 -5.97 16 26 C 0.09 1.81 6.52 86.55 0.56 2.37 16 27 C 0.10 1.78 6.62 86.55 0.57 2.36 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.13 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 1.87 7.00 -2.39 -0.02 1.85 16 33 H 0.11 2.04 6.99 -2.38 -0.02 2.03 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 12.96 8.32 -92.71 -0.77 12.19 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.05 1.85 8.09 -2.39 -0.02 1.83 16 38 H 0.26 13.10 8.32 -92.71 -0.77 12.32 16 39 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.07 3.38 7.60 -2.39 -0.02 3.37 16 42 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.09 2.14 6.34 -2.38 -0.02 2.12 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.12 1.89 6.91 -2.39 -0.02 1.87 16 Total: -1.00 -65.24 387.86 1.82 -63.42 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.24 Total: 28.33 kcal Atomic # 6 Polarization: 27.28 SS G_CDS: 7.36 Total: 34.63 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -7.49 Total: -102.26 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -0.31 Total: -64.75 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.63 kcal Total: -65.24 1.82 -63.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.061 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds