Wall clock time and date at job start Sat Apr 11 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46855 * 240.00290 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00271 * 3 2 1 7 7 C 1.38807 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00039 * 160.28864 * 7 2 1 9 9 N 1.36930 * 120.00205 * 340.28400 * 7 2 1 10 10 C 1.46503 * 119.99969 * 320.53766 * 9 7 2 11 11 C 1.53001 * 109.46911 * 269.99775 * 10 9 7 12 12 C 1.53001 * 109.47288 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47179 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99900 * 179.97438 * 13 12 11 15 15 O 1.21547 * 120.00074 * 359.97438 * 14 13 12 16 16 C 1.47883 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.40582 * 119.70465 * 359.72773 * 16 14 13 18 18 C 1.35816 * 120.73019 * 179.66411 * 17 16 14 19 19 C 1.40542 * 119.98322 * 0.65204 * 18 17 16 20 20 C 1.40829 * 121.13319 * 179.70284 * 19 18 17 21 21 C 1.36548 * 118.19636 * 179.97438 * 20 19 18 22 22 C 1.39415 * 119.94458 * 359.97438 * 21 20 19 23 23 N 1.31027 * 121.70902 * 359.97438 * 22 21 20 24 24 C 1.33737 * 121.35340 * 0.02562 * 23 22 21 25 25 C 1.38399 * 119.70765 * 180.02562 * 16 14 13 26 26 C 1.46497 * 120.00700 * 140.53333 * 9 7 2 27 27 C 1.53010 * 117.49191 * 3.28927 * 26 9 7 28 28 C 1.53003 * 59.99957 * 252.51124 * 27 26 9 29 29 H 0.97000 * 120.00354 * 355.00578 * 1 2 3 30 30 H 1.09001 * 109.47165 * 29.99118 * 10 9 7 31 31 H 1.08996 * 109.47790 * 149.99725 * 10 9 7 32 32 H 1.09002 * 109.47552 * 299.99881 * 11 10 9 33 33 H 1.08999 * 109.47078 * 59.99919 * 11 10 9 34 34 H 1.09008 * 109.46734 * 299.99733 * 12 11 10 35 35 H 1.08996 * 109.47538 * 59.99874 * 12 11 10 36 36 H 0.96997 * 120.00351 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.63074 * 0.02562 * 17 16 14 38 38 H 1.08000 * 120.00069 * 180.28123 * 18 17 16 39 39 H 1.07999 * 120.89445 * 359.95161 * 20 19 18 40 40 H 1.07999 * 120.02552 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.14715 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.23000 * 359.97437 * 25 16 14 43 43 H 1.08995 * 115.55377 * 148.99346 * 26 9 7 44 44 H 1.08990 * 117.50193 * 0.02562 * 27 26 9 45 45 H 1.09008 * 117.49268 * 145.02347 * 27 26 9 46 46 H 1.09004 * 117.49896 * 252.51715 * 28 27 26 47 47 H 1.08992 * 117.51607 * 107.48005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3534 0.3990 10 6 0.4640 -2.3296 1.5374 11 6 1.2392 -2.6057 2.8272 12 6 0.2766 -2.5803 4.0162 13 7 1.0191 -2.8440 5.2513 14 6 0.3726 -2.8700 6.4337 15 8 -0.8263 -2.6741 6.4753 16 6 1.1219 -3.1368 7.6804 17 6 2.5074 -3.3682 7.6245 18 6 3.2171 -3.6086 8.7572 19 6 2.5644 -3.6414 10.0014 20 6 3.2755 -3.8947 11.1903 21 6 2.5813 -3.9123 12.3660 22 6 1.2062 -3.6827 12.3658 23 7 0.5476 -3.4464 11.2579 24 6 1.1673 -3.4152 10.0732 25 6 0.4519 -3.1625 8.8911 26 6 1.6396 -3.6090 -0.3118 27 6 2.6701 -3.5847 -1.4426 28 6 1.1797 -3.7016 -1.7682 29 1 -0.4850 0.8368 0.0731 30 1 -0.0097 -1.3500 1.6009 31 1 -0.3004 -3.0948 1.4021 32 1 1.7131 -3.5853 2.7638 33 1 2.0036 -1.8405 2.9626 34 1 -0.1968 -1.6004 4.0795 35 1 -0.4880 -3.3452 3.8811 36 1 1.9760 -2.9993 5.2183 37 1 3.0139 -3.3489 6.6708 38 1 4.2819 -3.7804 8.7011 39 1 4.3409 -4.0705 11.1724 40 1 3.0971 -4.1040 13.2953 41 1 0.6698 -3.7000 13.3029 42 1 -0.6134 -2.9883 8.9269 43 1 1.5779 -4.5130 0.2940 44 1 3.1595 -2.6348 -1.6573 45 1 3.2866 -4.4730 -1.5807 46 1 0.8157 -4.6668 -2.1205 47 1 0.6880 -2.8286 -2.1971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265178728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:00 Heat of formation + Delta-G solvation = 63.426935 kcal Electronic energy + Delta-G solvation = -27515.080694 eV Core-core repulsion = 23664.063321 eV Total energy + Delta-G solvation = -3851.017373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.23070 -39.65451 -37.20112 -36.96759 -35.36387 -33.85366 -33.59026 -31.87855 -30.93857 -30.36483 -29.32592 -25.95988 -24.72487 -24.23512 -23.34966 -22.39291 -21.43554 -21.09784 -20.89167 -19.68999 -18.54820 -17.83516 -17.23932 -16.40084 -16.30038 -15.69801 -15.48262 -15.22296 -14.84438 -14.73634 -14.61925 -14.33318 -14.05438 -14.01682 -13.70667 -13.52077 -13.43663 -12.65454 -12.23825 -12.19865 -12.06286 -11.93732 -11.88156 -11.52186 -11.03365 -10.92857 -10.82365 -10.77468 -10.67694 -10.24001 -10.17195 -9.92821 -9.85382 -9.65039 -9.57879 -9.26464 -9.21767 -8.90327 -8.64212 -8.49438 -6.55193 -5.80682 -3.48188 -0.09044 0.27571 1.53508 2.19780 3.13748 3.16844 3.32873 3.40021 3.40406 3.79192 3.91918 4.16438 4.30762 4.41088 4.45627 4.52851 4.60147 4.76919 4.82695 4.93681 5.08467 5.15946 5.30637 5.38298 5.47818 5.51973 5.62172 5.64977 5.74392 5.89941 5.91330 5.95558 5.98408 6.11047 6.12360 6.26913 6.32757 6.36192 6.37535 6.49573 6.64429 6.65333 6.72767 7.03674 7.08054 7.24237 7.50679 7.55958 7.60539 7.76775 8.22191 8.47321 9.12917 9.73798 10.32691 11.13988 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.002020 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.543095 B =13860.673988 C =14224.476023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.016 3.984 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.154 3.846 11 C -0.146 4.146 12 C 0.120 3.880 13 N -0.718 5.718 14 C 0.551 3.449 15 O -0.534 6.534 16 C -0.112 4.112 17 C -0.089 4.089 18 C -0.101 4.101 19 C -0.089 4.089 20 C -0.061 4.061 21 C -0.170 4.170 22 C 0.128 3.872 23 N -0.466 5.466 24 C 0.117 3.883 25 C -0.025 4.025 26 C 0.120 3.880 27 C -0.196 4.196 28 C -0.222 4.222 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 -9.556 22.000 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.267 5.267 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.003 4.003 13 N -0.369 5.369 14 C 0.337 3.663 15 O -0.412 6.412 16 C -0.117 4.117 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.087 4.087 21 C -0.190 4.190 22 C -0.045 4.045 23 N -0.173 5.173 24 C -0.004 4.004 25 C -0.045 4.045 26 C 0.011 3.989 27 C -0.234 4.234 28 C -0.263 4.263 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.967 -9.069 21.818 24.370 hybrid contribution 1.928 0.644 -0.081 2.035 sum 7.895 -8.424 21.738 24.614 Atomic orbital electron populations 1.70039 1.05501 1.26398 1.50314 1.25254 0.95007 0.98813 0.99483 0.86500 0.79255 0.83479 0.78312 1.20659 1.21539 1.20813 1.18959 0.93250 0.85040 1.41940 0.91977 1.43325 1.50921 1.03107 1.29369 1.20757 0.90524 1.02753 0.83208 1.22472 0.99257 1.01316 0.95618 1.21526 0.95179 1.01626 0.81979 1.46093 1.12234 1.71737 1.06804 1.18184 0.87081 0.77580 0.83423 1.90793 1.14314 1.49239 1.86887 1.20018 0.94003 1.03736 0.93973 1.21033 0.92832 0.97607 0.99295 1.20879 1.00178 1.00039 0.90855 1.18971 0.94259 1.00877 0.94982 1.21529 1.00409 0.95265 0.91465 1.21970 0.95968 1.01700 0.99348 1.23030 0.91739 0.93120 0.96617 1.68041 1.39291 1.12081 0.97914 1.18775 0.90052 0.99286 0.92294 1.21263 1.01096 0.93334 0.88762 1.21238 1.00582 0.90635 0.86410 1.23014 0.92199 1.01732 1.06489 1.23347 0.96788 1.00939 1.05186 0.93390 0.88665 0.95222 0.93064 0.91475 0.91177 0.91625 0.76637 0.84818 0.84537 0.84121 0.84310 0.82155 0.83094 0.89696 0.88520 0.90899 0.91325 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 11.50 55.49 0.64 -23.94 16 2 C 0.02 0.42 4.98 -17.44 -0.09 0.33 16 3 Si 0.90 20.94 29.60 -169.99 -5.03 15.90 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.78 8.47 -15.06 -0.13 -6.91 16 8 H 0.06 1.62 6.75 -52.48 -0.35 1.26 16 9 N -0.55 -12.98 2.75 -165.66 -0.46 -13.44 16 10 C 0.15 3.36 5.33 -4.04 -0.02 3.34 16 11 C -0.15 -2.55 5.65 -26.73 -0.15 -2.70 16 12 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 13 N -0.72 -9.77 5.50 -61.23 -0.34 -10.11 16 14 C 0.55 8.23 7.77 -12.31 -0.10 8.13 16 15 O -0.53 -9.97 16.29 5.32 0.09 -9.88 16 16 C -0.11 -1.37 5.87 -105.01 -0.62 -1.99 16 17 C -0.09 -0.83 9.44 -39.57 -0.37 -1.20 16 18 C -0.10 -0.82 9.74 -39.58 -0.39 -1.20 16 19 C -0.09 -0.83 5.75 -106.72 -0.61 -1.45 16 20 C -0.06 -0.41 9.89 -39.21 -0.39 -0.79 16 21 C -0.17 -1.01 10.03 -39.75 -0.40 -1.41 16 22 C 0.13 0.99 11.15 -17.46 -0.19 0.79 16 23 N -0.47 -5.26 10.34 -10.98 -0.11 -5.38 16 24 C 0.12 1.36 6.60 -84.88 -0.56 0.80 16 25 C -0.02 -0.32 9.56 -38.69 -0.37 -0.69 16 26 C 0.12 2.51 6.56 -67.92 -0.45 2.06 16 27 C -0.20 -3.81 9.80 -26.72 -0.26 -4.07 16 28 C -0.22 -4.51 10.36 -26.73 -0.28 -4.79 16 29 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 30 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16 31 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.40 4.30 6.45 -40.82 -0.26 4.04 16 37 H 0.13 0.94 6.34 -52.48 -0.33 0.61 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.15 2.04 7.60 -52.49 -0.40 1.64 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.10 2.05 6.46 -51.93 -0.34 1.72 16 45 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -32.19 392.87 -11.28 -43.47 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.60 Total: 7.28 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -5.39 Total: -9.84 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.27 Total: -52.86 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.19 -11.28 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265178728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.898 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds