Wall clock time and date at job start Sat Apr 11 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46855 * 240.00290 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00271 * 3 2 1 7 7 C 1.38807 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00039 * 160.28864 * 7 2 1 9 9 N 1.36930 * 120.00205 * 340.28400 * 7 2 1 10 10 C 1.46503 * 119.99969 * 320.53766 * 9 7 2 11 11 C 1.53001 * 109.46911 * 269.99775 * 10 9 7 12 12 C 1.53001 * 109.47288 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47179 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99900 * 179.97438 * 13 12 11 15 15 O 1.21547 * 120.00074 * 359.97438 * 14 13 12 16 16 C 1.47883 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.40582 * 119.70465 * 359.72773 * 16 14 13 18 18 C 1.35816 * 120.73019 * 179.66411 * 17 16 14 19 19 C 1.40542 * 119.98322 * 0.65204 * 18 17 16 20 20 C 1.40829 * 121.13319 * 179.70284 * 19 18 17 21 21 C 1.36548 * 118.19636 * 179.97438 * 20 19 18 22 22 C 1.39415 * 119.94458 * 359.97438 * 21 20 19 23 23 N 1.31027 * 121.70902 * 359.97438 * 22 21 20 24 24 C 1.33737 * 121.35340 * 0.02562 * 23 22 21 25 25 C 1.38399 * 119.70765 * 180.02562 * 16 14 13 26 26 C 1.46497 * 120.00700 * 140.53333 * 9 7 2 27 27 C 1.53010 * 117.49191 * 3.28927 * 26 9 7 28 28 C 1.53003 * 59.99957 * 252.51124 * 27 26 9 29 29 H 0.97000 * 120.00354 * 355.00578 * 1 2 3 30 30 H 1.09001 * 109.47165 * 29.99118 * 10 9 7 31 31 H 1.08996 * 109.47790 * 149.99725 * 10 9 7 32 32 H 1.09002 * 109.47552 * 299.99881 * 11 10 9 33 33 H 1.08999 * 109.47078 * 59.99919 * 11 10 9 34 34 H 1.09008 * 109.46734 * 299.99733 * 12 11 10 35 35 H 1.08996 * 109.47538 * 59.99874 * 12 11 10 36 36 H 0.96997 * 120.00351 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.63074 * 0.02562 * 17 16 14 38 38 H 1.08000 * 120.00069 * 180.28123 * 18 17 16 39 39 H 1.07999 * 120.89445 * 359.95161 * 20 19 18 40 40 H 1.07999 * 120.02552 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.14715 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.23000 * 359.97437 * 25 16 14 43 43 H 1.08995 * 115.55377 * 148.99346 * 26 9 7 44 44 H 1.08990 * 117.50193 * 0.02562 * 27 26 9 45 45 H 1.09008 * 117.49268 * 145.02347 * 27 26 9 46 46 H 1.09004 * 117.49896 * 252.51715 * 28 27 26 47 47 H 1.08992 * 117.51607 * 107.48005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3534 0.3990 10 6 0.4640 -2.3296 1.5374 11 6 1.2392 -2.6057 2.8272 12 6 0.2766 -2.5803 4.0162 13 7 1.0191 -2.8440 5.2513 14 6 0.3726 -2.8700 6.4337 15 8 -0.8263 -2.6741 6.4753 16 6 1.1219 -3.1368 7.6804 17 6 2.5074 -3.3682 7.6245 18 6 3.2171 -3.6086 8.7572 19 6 2.5644 -3.6414 10.0014 20 6 3.2755 -3.8947 11.1903 21 6 2.5813 -3.9123 12.3660 22 6 1.2062 -3.6827 12.3658 23 7 0.5476 -3.4464 11.2579 24 6 1.1673 -3.4152 10.0732 25 6 0.4519 -3.1625 8.8911 26 6 1.6396 -3.6090 -0.3118 27 6 2.6701 -3.5847 -1.4426 28 6 1.1797 -3.7016 -1.7682 29 1 -0.4850 0.8368 0.0731 30 1 -0.0097 -1.3500 1.6009 31 1 -0.3004 -3.0948 1.4021 32 1 1.7131 -3.5853 2.7638 33 1 2.0036 -1.8405 2.9626 34 1 -0.1968 -1.6004 4.0795 35 1 -0.4880 -3.3452 3.8811 36 1 1.9760 -2.9993 5.2183 37 1 3.0139 -3.3489 6.6708 38 1 4.2819 -3.7804 8.7011 39 1 4.3409 -4.0705 11.1724 40 1 3.0971 -4.1040 13.2953 41 1 0.6698 -3.7000 13.3029 42 1 -0.6134 -2.9883 8.9269 43 1 1.5779 -4.5130 0.2940 44 1 3.1595 -2.6348 -1.6573 45 1 3.2866 -4.4730 -1.5807 46 1 0.8157 -4.6668 -2.1205 47 1 0.6880 -2.8286 -2.1971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265178728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:57 Heat of formation + Delta-G solvation = 44.381321 kcal Electronic energy + Delta-G solvation = -27515.906574 eV Core-core repulsion = 23664.063321 eV Total energy + Delta-G solvation = -3851.843253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.95118 -40.75408 -38.84144 -37.79715 -36.75265 -35.27429 -34.49034 -33.46771 -31.99468 -31.06152 -30.82311 -27.42632 -26.05920 -24.90138 -24.71342 -23.17211 -22.99425 -22.50153 -22.04989 -21.43036 -19.50579 -18.56079 -18.25479 -17.87845 -17.27335 -17.14147 -16.79806 -16.63453 -16.34694 -15.80175 -15.50772 -15.42926 -15.13666 -14.97018 -14.85817 -14.58758 -14.35960 -13.93242 -13.90274 -13.64655 -13.25333 -12.97005 -12.81453 -12.68593 -12.61003 -12.56291 -12.44401 -12.27777 -12.04007 -11.86272 -11.57689 -11.42201 -11.28301 -11.17692 -10.86477 -10.50486 -10.46543 -10.24802 -9.83455 -9.35419 -8.48038 -7.77042 -5.49619 -0.80236 -0.38281 0.84656 1.42359 1.45386 1.47506 1.53714 2.00317 2.22939 2.49606 3.07042 3.17237 3.26037 3.42482 3.49441 3.53635 3.61865 3.82128 3.93286 4.03269 4.05538 4.17826 4.18950 4.34534 4.34947 4.47767 4.56692 4.56925 4.61240 4.71721 4.76658 4.85684 4.87652 4.96652 4.97351 5.07595 5.09306 5.12192 5.15405 5.29852 5.35349 5.38808 5.48092 5.50989 5.57908 5.69387 5.76352 5.83730 6.44501 6.48197 6.89837 7.08416 7.17767 7.86265 8.38499 9.11760 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.002020 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.543095 B =13860.673988 C =14224.476023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.035 4.035 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.258 4.258 8 H 0.061 0.939 9 N -0.567 5.567 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.132 3.868 13 N -0.704 5.704 14 C 0.549 3.451 15 O -0.583 6.583 16 C -0.120 4.120 17 C -0.100 4.100 18 C -0.082 4.082 19 C -0.101 4.101 20 C -0.057 4.057 21 C -0.162 4.162 22 C 0.126 3.874 23 N -0.513 5.513 24 C 0.093 3.907 25 C -0.051 4.051 26 C 0.103 3.897 27 C -0.179 4.179 28 C -0.225 4.225 29 H 0.249 0.751 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.415 0.585 37 H 0.158 0.842 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.110 -11.595 24.019 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.388 4.388 8 H 0.078 0.922 9 N -0.284 5.284 10 C 0.027 3.973 11 C -0.161 4.161 12 C 0.007 3.993 13 N -0.355 5.355 14 C 0.338 3.662 15 O -0.464 6.464 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.083 4.083 21 C -0.181 4.181 22 C -0.046 4.046 23 N -0.222 5.222 24 C -0.027 4.027 25 C -0.071 4.071 26 C -0.005 4.005 27 C -0.217 4.217 28 C -0.265 4.265 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.176 0.824 38 H 0.196 0.804 39 H 0.198 0.802 40 H 0.197 0.803 41 H 0.204 0.796 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.092 0.908 45 H 0.130 0.870 46 H 0.118 0.882 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.222 -11.132 23.834 28.221 hybrid contribution 0.640 1.185 -0.575 1.465 sum 10.862 -9.947 23.259 27.529 Atomic orbital electron populations 1.70178 1.06803 1.26422 1.52419 1.25906 0.95571 1.01557 1.00243 0.85609 0.77964 0.79978 0.78520 1.20221 1.22462 1.19959 1.19143 0.93180 0.86043 1.40454 0.92182 1.43530 1.50922 1.03589 1.30401 1.20659 0.90913 1.00863 0.84896 1.22102 0.98314 1.02101 0.93618 1.21206 0.95000 1.00346 0.82711 1.45849 1.12925 1.71129 1.05644 1.18672 0.86670 0.76443 0.84450 1.90761 1.16569 1.51493 1.87611 1.19822 0.95387 1.05287 0.92014 1.21230 0.91213 0.98196 1.01146 1.21337 1.01857 0.97239 0.89592 1.19307 0.93330 1.00793 0.96947 1.22017 1.02164 0.93768 0.90327 1.22420 0.95055 0.99714 1.00951 1.23686 0.93249 0.91213 0.96496 1.68009 1.40909 1.14458 0.98831 1.18847 0.91465 1.00450 0.91952 1.21157 1.00186 0.95487 0.90226 1.21580 1.01662 0.90425 0.86849 1.23017 0.91750 1.02297 1.04619 1.23265 0.97683 1.00782 1.04806 0.94147 0.92259 0.95143 0.90704 0.92401 0.93567 0.91865 0.74626 0.82443 0.80390 0.80212 0.80297 0.79574 0.85914 0.86716 0.90792 0.86982 0.88229 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.08 11.50 21.65 0.25 -52.83 16 2 C -0.04 -1.90 4.98 84.86 0.42 -1.48 16 3 Si 0.95 43.84 29.60 68.60 2.03 45.87 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.26 -13.44 8.47 84.03 0.71 -12.73 16 8 H 0.06 3.12 6.75 -2.91 -0.02 3.10 16 9 N -0.57 -26.72 2.75 -678.02 -1.86 -28.58 16 10 C 0.15 6.79 5.33 86.38 0.46 7.25 16 11 C -0.12 -4.17 5.65 30.60 0.17 -4.00 16 12 C 0.13 4.33 5.67 86.38 0.49 4.82 16 13 N -0.70 -19.15 5.50 -465.92 -2.56 -21.72 16 14 C 0.55 17.21 7.77 86.80 0.67 17.88 16 15 O -0.58 -23.54 16.29 -3.86 -0.06 -23.60 16 16 C -0.12 -3.04 5.87 -20.11 -0.12 -3.16 16 17 C -0.10 -1.67 9.44 22.28 0.21 -1.45 16 18 C -0.08 -1.05 9.74 22.27 0.22 -0.83 16 19 C -0.10 -1.67 5.75 -21.23 -0.12 -1.79 16 20 C -0.06 -0.52 9.89 22.51 0.22 -0.30 16 21 C -0.16 -1.27 10.03 22.16 0.22 -1.05 16 22 C 0.13 1.72 11.15 85.10 0.95 2.67 16 23 N -0.51 -11.82 10.34 -188.66 -1.95 -13.77 16 24 C 0.09 2.20 6.60 40.25 0.27 2.47 16 25 C -0.05 -1.40 9.56 22.85 0.22 -1.18 16 26 C 0.10 4.11 6.56 45.00 0.30 4.41 16 27 C -0.18 -6.54 9.80 30.60 0.30 -6.24 16 28 C -0.22 -8.88 10.36 30.60 0.32 -8.57 16 29 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 30 H 0.06 3.11 5.59 -2.39 -0.01 3.09 16 31 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.42 8.32 6.45 -92.71 -0.60 7.72 16 37 H 0.16 1.74 6.34 -2.91 -0.02 1.72 16 38 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 41 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.12 3.90 7.60 -2.91 -0.02 3.88 16 43 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.07 3.06 6.46 -2.39 -0.02 3.05 16 45 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 46 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 47 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -76.26 392.87 2.14 -74.12 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.39 Total: 23.80 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 5.91 Total: -3.29 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -6.13 Total: -116.90 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -76.26 2.14 -74.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265178728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.497 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds