Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00143 * 2 1 4 4 H 1.48497 * 109.47378 * 269.99723 * 3 2 1 5 5 H 1.48500 * 109.47328 * 29.99917 * 3 2 1 6 6 H 1.48498 * 109.47053 * 149.99895 * 3 2 1 7 7 C 1.38817 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99434 * 160.28065 * 7 2 1 9 9 N 1.36935 * 120.00015 * 340.28296 * 7 2 1 10 10 C 1.46497 * 120.00120 * 320.53466 * 9 7 2 11 11 C 1.52995 * 109.47035 * 269.99962 * 10 9 7 12 12 C 1.53003 * 109.47153 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47238 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99729 * 180.27424 * 13 12 11 15 15 O 1.21494 * 119.99964 * 359.72266 * 14 13 12 16 16 C 1.48279 * 119.99816 * 179.72209 * 14 13 12 17 17 C 1.40278 * 119.23875 * 180.02562 * 16 14 13 18 18 C 1.36509 * 119.81566 * 179.97438 * 17 16 14 19 19 C 1.40759 * 118.24498 * 0.02562 * 18 17 16 20 20 C 1.40420 * 121.28551 * 180.02562 * 19 18 17 21 21 C 1.36134 * 119.65005 * 179.97438 * 20 19 18 22 22 C 1.39439 * 120.91440 * 0.02562 * 21 20 19 23 23 C 1.35995 * 121.08370 * 359.97438 * 22 21 20 24 24 C 1.40822 * 119.73772 * 0.02562 * 23 22 21 25 25 N 1.31877 * 119.23883 * 359.73272 * 16 14 13 26 26 C 1.46501 * 119.99674 * 140.53854 * 9 7 2 27 27 C 1.53001 * 117.50060 * 3.28470 * 26 9 7 28 28 C 1.53005 * 60.00114 * 252.51257 * 27 26 9 29 29 H 0.97006 * 119.99722 * 355.02647 * 1 2 3 30 30 H 1.09006 * 109.46821 * 150.00054 * 10 9 7 31 31 H 1.08996 * 109.47298 * 30.00053 * 10 9 7 32 32 H 1.09006 * 109.47241 * 60.00350 * 11 10 9 33 33 H 1.08999 * 109.47514 * 299.99818 * 11 10 9 34 34 H 1.08998 * 109.47187 * 59.99864 * 12 11 10 35 35 H 1.09005 * 109.46856 * 300.00561 * 12 11 10 36 36 H 0.96994 * 120.00384 * 359.97438 * 13 12 11 37 37 H 1.07996 * 120.09267 * 0.02562 * 17 16 14 38 38 H 1.07999 * 120.87637 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.17219 * 359.94981 * 20 19 18 40 40 H 1.07997 * 119.53746 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.45488 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.13224 * 180.02562 * 23 22 21 43 43 H 1.08994 * 115.54894 * 148.99543 * 26 9 7 44 44 H 1.09002 * 117.49609 * 0.02562 * 27 26 9 45 45 H 1.08994 * 117.50085 * 145.02344 * 27 26 9 46 46 H 1.09001 * 117.49567 * 252.51357 * 28 27 26 47 47 H 1.08996 * 117.51413 * 107.47993 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0427 -1.2298 -0.3150 9 7 1.3856 -2.3531 0.4011 10 6 0.4639 -2.3282 1.5395 11 6 1.2391 -2.6033 2.8295 12 6 0.2762 -2.5779 4.0184 13 7 1.0186 -2.8407 5.2537 14 6 0.3709 -2.8724 6.4353 15 8 -0.8277 -2.6782 6.4764 16 6 1.1213 -3.1445 7.6849 17 6 0.4312 -3.1744 8.9058 18 6 1.1102 -3.4243 10.0634 19 6 2.4982 -3.6453 9.9870 20 6 3.2591 -3.9084 11.1375 21 6 4.5996 -4.1177 11.0250 22 6 5.2297 -4.0741 9.7819 23 6 4.5253 -3.8221 8.6462 24 6 3.1367 -3.6002 8.7202 25 7 2.4211 -3.3585 7.6222 26 6 1.6394 -3.6094 -0.3086 27 6 2.6699 -3.5862 -1.4394 28 6 1.1794 -3.7033 -1.7649 29 1 -0.4850 0.8370 0.0728 30 1 -0.3006 -3.0936 1.4047 31 1 -0.0098 -1.3486 1.6021 32 1 2.0035 -1.8380 2.9643 33 1 1.7127 -3.5830 2.7670 34 1 -0.4879 -3.3434 3.8834 35 1 -0.1979 -1.5984 4.0811 36 1 1.9755 -2.9960 5.2208 37 1 -0.6345 -3.0011 8.9298 38 1 0.5961 -3.4509 11.0128 39 1 2.7835 -3.9441 12.1064 40 1 5.1831 -4.3196 11.9111 41 1 6.2945 -4.2432 9.7200 42 1 5.0289 -3.7923 7.6912 43 1 1.5776 -4.5128 0.2979 44 1 3.1593 -2.6364 -1.6549 45 1 3.2863 -4.4745 -1.5768 46 1 0.8154 -4.6688 -2.1164 47 1 0.6878 -2.8306 -2.1947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265180992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = 63.430552 kcal Electronic energy + Delta-G solvation = -27682.928064 eV Core-core repulsion = 23831.910848 eV Total energy + Delta-G solvation = -3851.017216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.27585 -39.44775 -37.24419 -37.02715 -35.32088 -33.97856 -33.46163 -31.70410 -30.97186 -30.39641 -29.28796 -26.02986 -24.88971 -24.03637 -23.22512 -22.46924 -21.40815 -20.95119 -20.80490 -19.64541 -18.47303 -17.96908 -17.50194 -16.38378 -15.70803 -15.58046 -15.55749 -15.28328 -14.86403 -14.75381 -14.63739 -14.52234 -14.02318 -13.94993 -13.46253 -13.44877 -13.36574 -12.60839 -12.19224 -12.06382 -12.04589 -11.87620 -11.87279 -11.48581 -11.00006 -10.95810 -10.79584 -10.73079 -10.64522 -10.41046 -10.18604 -10.05802 -9.72236 -9.59730 -9.54258 -9.23043 -9.17552 -8.83979 -8.65253 -8.46379 -6.51768 -5.77641 -3.44679 -0.12926 0.34029 1.58825 2.20023 3.09561 3.13120 3.34315 3.42628 3.44987 3.80493 3.83272 4.17595 4.39242 4.43549 4.44772 4.59379 4.76513 4.79618 4.97041 4.97649 5.10289 5.19724 5.34014 5.38531 5.55408 5.61871 5.66615 5.68943 5.78020 5.94677 5.95286 6.01910 6.03184 6.10469 6.15291 6.30464 6.38323 6.40704 6.42194 6.52774 6.67740 6.70906 6.76664 7.07122 7.12803 7.27048 7.32733 7.63906 7.69303 7.80218 8.23984 8.50628 9.16193 9.77186 10.36036 11.16972 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.002213 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.562530 B =12647.525753 C =12770.181075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.015 3.985 3 Si 0.894 3.106 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.155 3.845 11 C -0.146 4.146 12 C 0.118 3.882 13 N -0.701 5.701 14 C 0.562 3.438 15 O -0.534 6.534 16 C 0.123 3.877 17 C -0.124 4.124 18 C -0.064 4.064 19 C -0.090 4.090 20 C -0.102 4.102 21 C -0.109 4.109 22 C -0.106 4.106 23 C -0.083 4.083 24 C 0.123 3.877 25 N -0.442 5.442 26 C 0.121 3.879 27 C -0.196 4.196 28 C -0.222 4.222 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -9.484 22.586 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.080 0.920 9 N -0.268 5.268 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.005 4.005 13 N -0.351 5.351 14 C 0.345 3.655 15 O -0.410 6.410 16 C -0.031 4.031 17 C -0.145 4.145 18 C -0.090 4.090 19 C -0.092 4.092 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.102 4.102 24 C 0.000 4.000 25 N -0.154 5.154 26 C 0.012 3.988 27 C -0.234 4.234 28 C -0.263 4.263 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.376 -9.162 21.719 24.419 hybrid contribution 0.511 0.788 0.720 1.183 sum 6.887 -8.374 22.439 24.921 Atomic orbital electron populations 1.70057 1.05508 1.26224 1.50546 1.25247 0.95003 0.98799 0.99549 0.86458 0.79596 0.83784 0.77858 1.21210 1.21421 1.20251 1.18989 0.93242 0.85062 1.41669 0.91976 1.43336 1.50937 1.03097 1.29404 1.20753 0.90505 1.02705 0.83210 1.22470 0.99241 1.01483 0.95461 1.21567 0.95230 1.01590 0.82094 1.46055 1.13008 1.69723 1.06318 1.17917 0.86547 0.78034 0.82997 1.90785 1.13802 1.49938 1.86492 1.21489 0.89883 0.97269 0.94470 1.21784 1.02556 0.98604 0.91556 1.21471 0.92593 0.95777 0.99123 1.18994 0.94599 1.00907 0.94665 1.21000 0.94251 0.99478 0.97310 1.21011 0.94808 0.98889 0.97984 1.20952 1.00578 0.98921 0.92111 1.20935 0.91236 0.98175 0.99831 1.18871 0.94355 0.98913 0.87862 1.67851 1.06661 1.09705 1.31190 1.21230 1.00549 0.90629 0.86396 1.23012 0.92188 1.01734 1.06512 1.23347 0.96796 1.00906 1.05220 0.93494 0.95246 0.88678 0.91401 0.93001 0.91574 0.91112 0.75431 0.83051 0.83651 0.85038 0.85353 0.85018 0.84214 0.89694 0.88523 0.90895 0.91340 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 11.50 55.49 0.64 -24.22 16 2 C 0.02 0.40 4.98 -17.43 -0.09 0.32 16 3 Si 0.89 21.23 29.60 -169.99 -5.03 16.20 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.26 -6.85 8.47 -15.06 -0.13 -6.98 16 8 H 0.06 1.65 6.74 -52.49 -0.35 1.30 16 9 N -0.55 -13.30 2.75 -165.66 -0.46 -13.76 16 10 C 0.16 3.46 5.33 -4.05 -0.02 3.44 16 11 C -0.15 -2.69 5.65 -26.73 -0.15 -2.84 16 12 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 13 N -0.70 -10.72 5.54 -61.11 -0.34 -11.06 16 14 C 0.56 8.85 7.81 -12.13 -0.09 8.76 16 15 O -0.53 -9.75 16.28 5.37 0.09 -9.66 16 16 C 0.12 1.66 6.75 -82.95 -0.56 1.10 16 17 C -0.12 -1.38 9.54 -39.44 -0.38 -1.75 16 18 C -0.06 -0.56 9.88 -39.25 -0.39 -0.95 16 19 C -0.09 -0.86 5.75 -106.71 -0.61 -1.47 16 20 C -0.10 -0.71 9.77 -39.52 -0.39 -1.09 16 21 C -0.11 -0.67 9.96 -39.89 -0.40 -1.07 16 22 C -0.11 -0.73 9.94 -39.94 -0.40 -1.12 16 23 C -0.08 -0.76 9.99 -39.41 -0.39 -1.16 16 24 C 0.12 1.40 6.61 -84.85 -0.56 0.84 16 25 N -0.44 -5.77 9.47 -7.54 -0.07 -5.85 16 26 C 0.12 2.58 6.56 -67.93 -0.45 2.13 16 27 C -0.20 -3.90 9.80 -26.73 -0.26 -4.16 16 28 C -0.22 -4.59 10.36 -26.73 -0.28 -4.86 16 29 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.10 2.42 5.59 -51.93 -0.29 2.13 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.41 5.75 7.78 -40.82 -0.32 5.44 16 37 H 0.15 1.55 7.60 -52.49 -0.40 1.16 16 38 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.10 2.09 6.46 -51.93 -0.34 1.75 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -31.21 395.27 -11.52 -42.73 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.75 Total: 8.56 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -5.56 Total: -8.91 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.23 Total: -54.88 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.21 -11.52 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265180992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.159 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds