Wall clock time and date at job start Sat Apr 11 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00143 * 2 1 4 4 H 1.48497 * 109.47378 * 269.99723 * 3 2 1 5 5 H 1.48500 * 109.47328 * 29.99917 * 3 2 1 6 6 H 1.48498 * 109.47053 * 149.99895 * 3 2 1 7 7 C 1.38817 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99434 * 160.28065 * 7 2 1 9 9 N 1.36935 * 120.00015 * 340.28296 * 7 2 1 10 10 C 1.46497 * 120.00120 * 320.53466 * 9 7 2 11 11 C 1.52995 * 109.47035 * 269.99962 * 10 9 7 12 12 C 1.53003 * 109.47153 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47238 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99729 * 180.27424 * 13 12 11 15 15 O 1.21494 * 119.99964 * 359.72266 * 14 13 12 16 16 C 1.48279 * 119.99816 * 179.72209 * 14 13 12 17 17 C 1.40278 * 119.23875 * 180.02562 * 16 14 13 18 18 C 1.36509 * 119.81566 * 179.97438 * 17 16 14 19 19 C 1.40759 * 118.24498 * 0.02562 * 18 17 16 20 20 C 1.40420 * 121.28551 * 180.02562 * 19 18 17 21 21 C 1.36134 * 119.65005 * 179.97438 * 20 19 18 22 22 C 1.39439 * 120.91440 * 0.02562 * 21 20 19 23 23 C 1.35995 * 121.08370 * 359.97438 * 22 21 20 24 24 C 1.40822 * 119.73772 * 0.02562 * 23 22 21 25 25 N 1.31877 * 119.23883 * 359.73272 * 16 14 13 26 26 C 1.46501 * 119.99674 * 140.53854 * 9 7 2 27 27 C 1.53001 * 117.50060 * 3.28470 * 26 9 7 28 28 C 1.53005 * 60.00114 * 252.51257 * 27 26 9 29 29 H 0.97006 * 119.99722 * 355.02647 * 1 2 3 30 30 H 1.09006 * 109.46821 * 150.00054 * 10 9 7 31 31 H 1.08996 * 109.47298 * 30.00053 * 10 9 7 32 32 H 1.09006 * 109.47241 * 60.00350 * 11 10 9 33 33 H 1.08999 * 109.47514 * 299.99818 * 11 10 9 34 34 H 1.08998 * 109.47187 * 59.99864 * 12 11 10 35 35 H 1.09005 * 109.46856 * 300.00561 * 12 11 10 36 36 H 0.96994 * 120.00384 * 359.97438 * 13 12 11 37 37 H 1.07996 * 120.09267 * 0.02562 * 17 16 14 38 38 H 1.07999 * 120.87637 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.17219 * 359.94981 * 20 19 18 40 40 H 1.07997 * 119.53746 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.45488 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.13224 * 180.02562 * 23 22 21 43 43 H 1.08994 * 115.54894 * 148.99543 * 26 9 7 44 44 H 1.09002 * 117.49609 * 0.02562 * 27 26 9 45 45 H 1.08994 * 117.50085 * 145.02344 * 27 26 9 46 46 H 1.09001 * 117.49567 * 252.51357 * 28 27 26 47 47 H 1.08996 * 117.51413 * 107.47993 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0427 -1.2298 -0.3150 9 7 1.3856 -2.3531 0.4011 10 6 0.4639 -2.3282 1.5395 11 6 1.2391 -2.6033 2.8295 12 6 0.2762 -2.5779 4.0184 13 7 1.0186 -2.8407 5.2537 14 6 0.3709 -2.8724 6.4353 15 8 -0.8277 -2.6782 6.4764 16 6 1.1213 -3.1445 7.6849 17 6 0.4312 -3.1744 8.9058 18 6 1.1102 -3.4243 10.0634 19 6 2.4982 -3.6453 9.9870 20 6 3.2591 -3.9084 11.1375 21 6 4.5996 -4.1177 11.0250 22 6 5.2297 -4.0741 9.7819 23 6 4.5253 -3.8221 8.6462 24 6 3.1367 -3.6002 8.7202 25 7 2.4211 -3.3585 7.6222 26 6 1.6394 -3.6094 -0.3086 27 6 2.6699 -3.5862 -1.4394 28 6 1.1794 -3.7033 -1.7649 29 1 -0.4850 0.8370 0.0728 30 1 -0.3006 -3.0936 1.4047 31 1 -0.0098 -1.3486 1.6021 32 1 2.0035 -1.8380 2.9643 33 1 1.7127 -3.5830 2.7670 34 1 -0.4879 -3.3434 3.8834 35 1 -0.1979 -1.5984 4.0811 36 1 1.9755 -2.9960 5.2208 37 1 -0.6345 -3.0011 8.9298 38 1 0.5961 -3.4509 11.0128 39 1 2.7835 -3.9441 12.1064 40 1 5.1831 -4.3196 11.9111 41 1 6.2945 -4.2432 9.7200 42 1 5.0289 -3.7923 7.6912 43 1 1.5776 -4.5128 0.2979 44 1 3.1593 -2.6364 -1.6549 45 1 3.2863 -4.4745 -1.5768 46 1 0.8154 -4.6688 -2.1164 47 1 0.6878 -2.8306 -2.1947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265180992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:16 Heat of formation + Delta-G solvation = 45.836234 kcal Electronic energy + Delta-G solvation = -27683.691011 eV Core-core repulsion = 23831.910848 eV Total energy + Delta-G solvation = -3851.780163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.06494 -40.58648 -38.85494 -37.89891 -36.75496 -35.30664 -34.61091 -33.38213 -31.92242 -31.19494 -30.74737 -27.47360 -26.25121 -25.07564 -24.45569 -23.09882 -23.04089 -22.50812 -21.98394 -21.43734 -19.33218 -18.90960 -18.28538 -18.14811 -17.30566 -16.88432 -16.73452 -16.52457 -16.23894 -15.90498 -15.57488 -15.46529 -15.36062 -14.95005 -14.83527 -14.46296 -14.19614 -14.05024 -13.91257 -13.65388 -13.26270 -12.83212 -12.68340 -12.64310 -12.58914 -12.48730 -12.45388 -12.31287 -12.05245 -11.88513 -11.66022 -11.51576 -11.39494 -11.28099 -10.89171 -10.65066 -10.48072 -10.23870 -9.82838 -9.28589 -8.49185 -7.78395 -5.50539 -0.87356 -0.36276 0.90549 1.35032 1.42515 1.46005 1.54516 1.96443 2.18742 2.48529 2.91545 3.06634 3.16440 3.41559 3.50354 3.55613 3.65676 3.81441 3.87167 4.13987 4.14962 4.23124 4.24865 4.33031 4.37294 4.46614 4.50162 4.54527 4.60067 4.74780 4.76427 4.86374 4.92723 4.95628 5.02202 5.06950 5.08141 5.10065 5.33541 5.36830 5.37349 5.43124 5.45720 5.48758 5.56689 5.68229 5.81520 5.85308 6.30261 6.47360 6.64861 7.02113 7.16530 7.84800 8.37199 9.10808 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.002213 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.562530 B =12647.525753 C =12770.181075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.034 4.034 3 Si 0.950 3.050 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.058 0.942 9 N -0.568 5.568 10 C 0.156 3.844 11 C -0.123 4.123 12 C 0.131 3.869 13 N -0.697 5.697 14 C 0.561 3.439 15 O -0.567 6.567 16 C 0.097 3.903 17 C -0.143 4.143 18 C -0.046 4.046 19 C -0.101 4.101 20 C -0.101 4.101 21 C -0.103 4.103 22 C -0.093 4.093 23 C -0.110 4.110 24 C 0.096 3.904 25 N -0.461 5.461 26 C 0.102 3.898 27 C -0.180 4.180 28 C -0.221 4.221 29 H 0.250 0.750 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.416 0.584 37 H 0.152 0.848 38 H 0.186 0.814 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 -11.289 25.572 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.076 0.924 9 N -0.286 5.286 10 C 0.029 3.971 11 C -0.163 4.163 12 C 0.007 3.993 13 N -0.348 5.348 14 C 0.346 3.654 15 O -0.445 6.445 16 C -0.055 4.055 17 C -0.164 4.164 18 C -0.072 4.072 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.129 4.129 24 C -0.028 4.028 25 N -0.173 5.173 26 C -0.006 4.006 27 C -0.218 4.218 28 C -0.262 4.262 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.253 0.747 37 H 0.170 0.830 38 H 0.203 0.797 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.177 0.823 42 H 0.156 0.844 43 H 0.130 0.870 44 H 0.092 0.908 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.796 -10.986 24.700 28.428 hybrid contribution -0.082 1.238 -0.105 1.246 sum 8.714 -9.747 24.594 27.853 Atomic orbital electron populations 1.70182 1.06726 1.26393 1.52396 1.25886 0.95611 1.01474 1.00191 0.85568 0.78627 0.80407 0.77576 1.21206 1.21871 1.19438 1.19149 0.93130 0.86152 1.40458 0.92413 1.43541 1.50996 1.03609 1.30442 1.20644 0.90831 1.01006 0.84576 1.22115 0.98386 1.01702 0.94071 1.21273 0.94899 1.00727 0.82416 1.45925 1.13198 1.69757 1.05878 1.18338 0.86351 0.76961 0.83737 1.90747 1.15217 1.51467 1.87102 1.21170 0.90386 1.00031 0.93944 1.21836 1.02719 1.00189 0.91651 1.21892 0.92378 0.93192 0.99702 1.19324 0.95242 1.00809 0.94955 1.21404 0.94600 0.98304 0.97608 1.21491 0.94882 0.96935 0.98802 1.21365 1.01870 0.96363 0.91638 1.21086 0.90702 1.00113 1.00998 1.19303 0.95276 0.99860 0.88344 1.67727 1.06539 1.10341 1.32707 1.21556 1.01813 0.90334 0.86927 1.23018 0.91862 1.02280 1.04675 1.23258 0.97504 1.00865 1.04527 0.94055 0.94866 0.92020 0.92890 0.91307 0.91299 0.92967 0.74685 0.83034 0.79697 0.81743 0.81819 0.82286 0.84438 0.86951 0.90785 0.87051 0.88123 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.57 11.50 21.65 0.25 -53.32 16 2 C -0.03 -1.87 4.98 84.86 0.42 -1.45 16 3 Si 0.95 44.81 29.60 68.60 2.03 46.84 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.26 -13.90 8.47 84.03 0.71 -13.19 16 8 H 0.06 3.11 6.74 -2.91 -0.02 3.09 16 9 N -0.57 -27.80 2.75 -678.04 -1.86 -29.66 16 10 C 0.16 7.15 5.33 86.38 0.46 7.61 16 11 C -0.12 -4.60 5.65 30.59 0.17 -4.43 16 12 C 0.13 4.59 5.67 86.38 0.49 5.08 16 13 N -0.70 -22.26 5.54 -465.54 -2.58 -24.84 16 14 C 0.56 18.62 7.81 86.91 0.68 19.30 16 15 O -0.57 -21.82 16.28 -3.70 -0.06 -21.88 16 16 C 0.10 2.73 6.75 42.31 0.29 3.01 16 17 C -0.14 -3.19 9.54 22.36 0.21 -2.97 16 18 C -0.05 -0.72 9.88 22.48 0.22 -0.50 16 19 C -0.10 -1.73 5.75 -21.22 -0.12 -1.85 16 20 C -0.10 -0.99 9.77 22.31 0.22 -0.77 16 21 C -0.10 -0.82 9.96 22.07 0.22 -0.60 16 22 C -0.09 -0.98 9.94 22.04 0.22 -0.76 16 23 C -0.11 -1.91 9.99 22.38 0.22 -1.68 16 24 C 0.10 2.13 6.61 40.47 0.27 2.40 16 25 N -0.46 -12.39 9.47 -177.76 -1.68 -14.07 16 26 C 0.10 4.23 6.56 44.99 0.30 4.53 16 27 C -0.18 -6.86 9.80 30.60 0.30 -6.56 16 28 C -0.22 -8.94 10.36 30.60 0.32 -8.63 16 29 H 0.25 14.29 8.32 -92.70 -0.77 13.52 16 30 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 31 H 0.06 3.30 5.59 -2.39 -0.01 3.28 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.42 12.14 7.78 -92.71 -0.72 11.42 16 37 H 0.15 3.22 7.60 -2.91 -0.02 3.20 16 38 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 41 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 44 H 0.07 3.17 6.46 -2.39 -0.02 3.15 16 45 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 47 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -71.59 395.27 1.96 -69.63 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.27 Total: 28.76 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.60 Total: -1.46 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -5.88 Total: -121.90 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.06 Total: -21.88 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -71.59 1.96 -69.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265180992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.471 kcal (2) G-P(sol) polarization free energy of solvation -71.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds