Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48499 * 109.47230 * 269.99827 * 3 2 1 5 5 H 1.48500 * 109.47068 * 30.00373 * 3 2 1 6 6 H 1.48499 * 109.46801 * 150.00000 * 3 2 1 7 7 C 1.38811 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99942 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99829 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99773 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47201 * 325.00131 * 10 9 7 12 12 C 1.52999 * 109.47053 * 205.00391 * 10 9 7 13 13 N 1.46494 * 109.47179 * 55.00069 * 12 10 9 14 14 C 1.34786 * 120.00067 * 180.02562 * 13 12 10 15 15 O 1.21279 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99946 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47158 * 179.97438 * 16 14 13 18 18 C 1.36178 * 120.19431 * 265.00769 * 17 16 14 19 19 C 1.39313 * 120.86990 * 179.97438 * 18 17 16 20 20 C 1.36109 * 121.06827 * 359.97438 * 19 18 17 21 21 C 1.40554 * 119.74449 * 0.27978 * 20 19 18 22 22 N 1.33689 * 121.07244 * 180.27964 * 21 20 19 23 23 C 1.31084 * 121.32245 * 179.74423 * 22 21 20 24 24 C 1.39331 * 121.74804 * 359.69691 * 23 22 21 25 25 C 1.36566 * 119.94360 * 0.02562 * 24 23 22 26 26 C 1.40393 * 120.19573 * 84.97915 * 17 16 14 27 27 C 1.52996 * 109.47250 * 85.00332 * 10 9 7 28 28 C 1.53002 * 117.49626 * 8.74552 * 27 10 9 29 29 C 1.53001 * 117.49779 * 300.08866 * 27 10 9 30 30 H 0.96997 * 120.00494 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00119 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47042 * 294.99887 * 12 10 9 33 33 H 1.09002 * 109.47295 * 175.00064 * 12 10 9 34 34 H 0.96997 * 120.00198 * 0.02562 * 13 12 10 35 35 H 1.09003 * 109.47083 * 59.99935 * 16 14 13 36 36 H 1.09002 * 109.47324 * 300.00069 * 16 14 13 37 37 H 1.08007 * 119.56281 * 359.94395 * 18 17 16 38 38 H 1.08007 * 119.46405 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.12383 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.12024 * 179.72520 * 23 22 21 41 41 H 1.08001 * 120.02335 * 179.97438 * 24 23 22 42 42 H 1.08007 * 120.92795 * 180.02562 * 25 24 23 43 43 H 1.09000 * 115.55465 * 154.41753 * 27 10 9 44 44 H 1.08998 * 117.50304 * 0.02562 * 28 27 10 45 45 H 1.09004 * 117.50071 * 145.02522 * 28 27 10 46 46 H 1.09005 * 117.49765 * 214.97630 * 29 27 10 47 47 H 1.09002 * 117.49933 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5649 -3.2063 0.5888 12 6 5.4995 -2.2588 0.6081 13 7 5.3624 -1.6635 1.9395 14 6 6.4607 -1.3852 2.6697 15 8 7.5623 -1.6281 2.2245 16 6 6.3196 -0.7723 4.0391 17 6 7.6862 -0.5635 4.6392 18 6 8.2194 -1.5006 5.4710 19 6 9.4816 -1.3222 6.0331 20 6 10.2177 -0.2086 5.7675 21 6 9.6993 0.7838 4.9179 22 7 10.4017 1.8855 4.6346 23 6 9.9250 2.8118 3.8390 24 6 8.6701 2.6936 3.2453 25 6 7.9024 1.5905 3.4880 26 6 8.4173 0.5980 4.3434 27 6 4.2577 -2.9757 -1.4380 28 6 3.8368 -2.0303 -2.5649 29 6 2.9740 -3.2480 -2.2246 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 6.0785 -1.5916 -0.0305 33 1 6.0109 -3.2179 0.6898 34 1 4.4813 -1.4695 2.2957 35 1 5.7408 -1.4394 4.6779 36 1 5.8081 0.1867 3.9571 37 1 7.6561 -2.3936 5.6984 38 1 9.8824 -2.0799 6.6902 39 1 11.1944 -0.0858 6.2119 40 1 10.5211 3.6897 3.6380 41 1 8.3044 3.4741 2.5945 42 1 6.9275 1.4822 3.0359 43 1 5.1093 -3.6306 -1.6222 44 1 3.4565 -1.0486 -2.2827 45 1 4.4112 -2.0636 -3.4907 46 1 2.9812 -4.0819 -2.9266 47 1 2.0256 -3.0680 -1.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265362551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = 59.047412 kcal Electronic energy + Delta-G solvation = -28788.933001 eV Core-core repulsion = 24937.725717 eV Total energy + Delta-G solvation = -3851.207283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12219 -39.52640 -37.88232 -37.22170 -34.67423 -34.19853 -33.35597 -31.64461 -31.10018 -30.67612 -29.04476 -27.40646 -24.40804 -23.74596 -23.61530 -22.69663 -21.67663 -21.19263 -20.15593 -19.25543 -18.31225 -17.85934 -17.25104 -17.11247 -16.81719 -15.76591 -15.50756 -15.04681 -14.83124 -14.64284 -14.47520 -14.38141 -14.09067 -13.77054 -13.60754 -13.30284 -13.14744 -13.08134 -12.83869 -12.63134 -12.12530 -11.81974 -11.74529 -11.59955 -11.35669 -11.26242 -11.04434 -10.87314 -10.64321 -10.61803 -10.31757 -9.84783 -9.65631 -9.64679 -9.56845 -9.27575 -9.09683 -8.89798 -8.82711 -8.30953 -7.45543 -5.90785 -3.28094 0.24301 0.70463 1.84743 2.74365 2.75837 3.23015 3.28292 3.34813 3.41391 4.00651 4.14275 4.29324 4.44498 4.47829 4.56491 4.65291 4.67274 4.88780 4.96846 4.99612 5.09111 5.15115 5.20702 5.25991 5.30836 5.36429 5.39305 5.61869 5.68089 5.69801 5.79823 5.80165 5.87696 5.90082 5.91473 5.94253 6.20633 6.22964 6.30340 6.32551 6.40606 6.50972 6.56182 6.70701 6.72890 6.95391 7.07932 7.72273 7.75884 7.85089 8.27433 8.37580 9.04813 9.76782 9.95979 11.26860 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.003042 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.009201 B = 9201.771802 C =10109.677851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.743 5.743 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.117 3.883 13 N -0.717 5.717 14 C 0.510 3.490 15 O -0.541 6.541 16 C -0.111 4.111 17 C -0.034 4.034 18 C -0.108 4.108 19 C -0.096 4.096 20 C -0.098 4.098 21 C 0.127 3.873 22 N -0.477 5.477 23 C 0.129 3.871 24 C -0.178 4.178 25 C -0.052 4.052 26 C -0.084 4.084 27 C -0.179 4.179 28 C -0.165 4.165 29 C -0.170 4.170 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.947 -0.528 9.556 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.186 4.186 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.386 5.386 10 C 0.088 3.912 11 H 0.084 0.916 12 C -0.008 4.008 13 N -0.369 5.369 14 C 0.296 3.704 15 O -0.418 6.418 16 C -0.151 4.151 17 C -0.035 4.035 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.117 4.117 21 C 0.005 3.995 22 N -0.185 5.185 23 C -0.043 4.043 24 C -0.197 4.197 25 C -0.078 4.078 26 C -0.086 4.086 27 C -0.200 4.200 28 C -0.202 4.202 29 C -0.206 4.206 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.296 -0.768 9.677 19.834 hybrid contribution -0.795 1.275 -0.552 1.600 sum 16.501 0.507 9.125 18.863 Atomic orbital electron populations 1.69680 1.05085 1.25912 1.56878 1.24642 0.95104 0.96968 1.01850 0.86667 0.79066 0.85414 0.77970 1.21077 1.21806 1.20440 1.19010 0.80267 0.94601 1.43598 0.88894 1.42842 1.04132 1.01771 1.89865 1.19958 0.89620 0.89476 0.92125 0.91608 1.21628 0.98400 0.98062 0.82679 1.46026 1.09450 1.63334 1.18087 1.20349 0.84674 0.78830 0.86568 1.90716 1.25815 1.53071 1.72203 1.20758 0.95601 1.03756 0.95009 1.19082 0.94794 0.93473 0.96187 1.20769 0.95921 0.98553 0.97339 1.20847 0.94209 0.97341 0.99156 1.20752 1.00324 0.92812 0.97808 1.18833 0.90532 0.93271 0.96816 1.68032 1.34483 1.01491 1.14514 1.22929 0.93205 0.96757 0.91424 1.21886 0.96272 0.99435 1.02154 1.21526 0.99778 0.92293 0.94194 1.18609 0.95516 0.95664 0.98855 1.23003 0.98346 1.03653 0.95021 1.22841 1.03228 0.97152 0.97021 1.22901 0.96400 0.98660 1.02686 0.92945 0.80413 0.91802 0.91444 0.75361 0.87269 0.87693 0.85479 0.85215 0.84864 0.82473 0.84504 0.84654 0.89356 0.87250 0.91074 0.90830 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.99 13.97 55.49 0.78 -26.22 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 20.26 27.74 -169.99 -4.71 15.55 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -5.92 6.52 56.52 0.37 -5.55 16 7 C -0.25 -5.98 8.64 -15.06 -0.13 -6.11 16 8 H 0.09 2.48 7.13 -52.49 -0.37 2.10 16 9 N -0.74 -14.87 2.88 -53.43 -0.15 -15.03 16 10 C 0.20 3.32 2.86 -67.93 -0.19 3.13 16 11 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 12 C 0.12 1.77 5.21 -4.05 -0.02 1.75 16 13 N -0.72 -10.23 5.39 -60.30 -0.32 -10.55 16 14 C 0.51 7.34 7.82 -10.98 -0.09 7.25 16 15 O -0.54 -9.69 16.03 5.56 0.09 -9.60 16 16 C -0.11 -1.24 5.24 -29.04 -0.15 -1.39 16 17 C -0.03 -0.42 4.38 -104.55 -0.46 -0.88 16 18 C -0.11 -1.16 9.58 -39.92 -0.38 -1.55 16 19 C -0.10 -0.96 9.94 -39.95 -0.40 -1.35 16 20 C -0.10 -1.13 9.98 -39.47 -0.39 -1.52 16 21 C 0.13 1.72 6.60 -84.86 -0.56 1.16 16 22 N -0.48 -6.36 10.34 -10.98 -0.11 -6.47 16 23 C 0.13 1.42 11.15 -17.46 -0.19 1.23 16 24 C -0.18 -1.93 10.03 -39.78 -0.40 -2.33 16 25 C -0.05 -0.65 9.37 -39.23 -0.37 -1.02 16 26 C -0.08 -1.14 5.74 -106.80 -0.61 -1.75 16 27 C -0.18 -2.90 5.71 -90.62 -0.52 -3.42 16 28 C -0.17 -2.90 9.74 -26.69 -0.26 -3.16 16 29 C -0.17 -2.93 9.87 -26.69 -0.26 -3.20 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.36 7.41 5.66 -40.82 -0.23 7.18 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.41 5.72 8.14 -40.82 -0.33 5.39 16 35 H 0.11 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.10 1.05 6.73 -51.93 -0.35 0.70 16 37 H 0.13 1.09 8.05 -52.48 -0.42 0.67 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.14 1.58 6.57 -52.48 -0.34 1.24 16 43 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 44 H 0.11 2.23 6.68 -51.93 -0.35 1.89 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.11 2.20 6.22 -51.93 -0.32 1.88 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -31.78 386.98 -10.63 -42.41 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -6.53 Total: 17.05 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -5.49 Total: -12.97 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.18 Total: -58.27 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.71 Total: 15.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.78 -10.63 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265362551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.460 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds